mRNA_H-elongata_contig15100.3389.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15100.3389.1
Unique NamemRNA_H-elongata_contig15100.3389.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Match: D8LGK4_ECTSI (alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK4_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 3.610e-99
Identity = 147/186 (79.03%), Postives = 166/186 (89.25%), Query Frame = 1 
Query:    1 YDKAMDGMTRVLLKKSDPSGLTYVSDWNGHSNTHKMDHLVCFLAGTLALGSETTDDPLRKERDMKTAKALAYTCYQMYKRQKTGLAPELVKFQFGKDMVVEKRAEYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFHNVNNPRETPEDRMESFFLAETLKYMYLIQEPD 558
            YD+AMDGMT  LL+KSDPSGLTYVSD +G  N  KMDHLVCFLAGTLALGS+TTDDP+R +RD+KTAKALAYTCYQMY+RQKTGLAPE+V F+ GKDMVV  +A YNILRPET EAL+VLHQ+TGDPIYRDWS+ IFQAFEKHCRLPV +G+F NVN+P   PEDRMESFFLAETLKY+YLIQ+PD
Sbjct:  672 YDRAMDGMTSKLLRKSDPSGLTYVSDLSGSKNVDKMDHLVCFLAGTLALGSKTTDDPVRADRDLKTAKALAYTCYQMYERQKTGLAPEMVTFEKGKDMVVPPKAAYNILRPETAEALYVLHQITGDPIYRDWSWNIFQAFEKHCRLPVAFGSFPNVNDPNRQPEDRMESFFLAETLKYLYLIQDPD 857
[Close]
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Match: A0A7S1GA01_9STRA (alpha-1,2-Mannosidase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GA01_9STRA)

HSP 1 Score: 239 bits (609), Expect = 2.150e-73
Identity = 113/189 (59.79%), Postives = 142/189 (75.13%), Query Frame = 1 
Query:    1 YDKAMDGMTRVLLKKSDPSGLTYVSDWNGHSNTHKMDHLVCFLAGTLALGSETTDDPL---RKERDMKTAKALAYTCYQMYKRQKTGLAPELVKFQFGKDMVVEKRAEYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFHNVNNPRETPEDRMESFFLAETLKYMYLIQEPD 558
            YD+AMDGMT  LLK + PS L YVSDW+G+ N HKMDHLVCF+ G LALG+ ++D       K RD+K AKALAYTCYQMY R  TGL+ E V+F+ G+D V   RA + ILRPE  E+LF+LHQLTG+PIYR+W + +FQA E++ ++  GYGA  +V +   TP+DRMESFFLAETLKY+YL+Q PD
Sbjct:  318 YDRAMDGMTNKLLKTTTPSNLMYVSDWDGNRNVHKMDHLVCFVPGMLALGAYSSDGTRGAGNKWRDLKNAKALAYTCYQMYARMATGLSAEYVEFRGGQDFVAAPRAPFYILRPEASESLFILHQLTGNPIYREWGWRMFQAIERYTKVEYGYGAHPDVRDTARTPDDRMESFFLAETLKYLYLLQSPD 506
[Close]
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Match: B7S490_PHATC (alpha-1,2-Mannosidase (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7S490_PHATC)

HSP 1 Score: 228 bits (582), Expect = 9.010e-70
Identity = 110/193 (56.99%), Postives = 142/193 (73.58%), Query Frame = 1 
Query:    1 YDKAMDGMTRVLLKKSDPSGLTYVSDWNGHSNT--HKMDHLVCFLAGTLALGSETTDDPL-----RKERDMKTAKALAYTCYQMYKRQKTGLAPELVKFQFGKDMVVEKRAEYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFHNVNNPRETPEDRMESFFLAETLKYMYLIQEPD 558
            YDK++ GM   LL+ S PS LTY++D N +S T  HKMDHLVCF+ G LALG+ T  DPL     R +RD++TAKAL YTCYQMY R  TG++ E V+F  G+D  + + A + +LRPE VE+ F+LHQLTGDP+YR+W +E+FQA EK+C+ P GYGA +NV +    P D MESFFLAETLKY+YL+Q+PD
Sbjct:  279 YDKSIQGMHDQLLQTSTPSKLTYIADKNRNSGTMDHKMDHLVCFMGGLLALGAYT--DPLGLDSTRAQRDLQTAKALTYTCYQMYARMNTGISAEYVQFYAGRDFQIGRGAPHYLLRPEAVESFFILHQLTGDPVYREWGWEVFQAIEKYCKTPYGYGALNNVADVNGKPRDSMESFFLAETLKYLYLLQDPD 469
[Close]
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Match: A0A812YES5_SYMMI (alpha-1,2-Mannosidase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YES5_SYMMI)

HSP 1 Score: 218 bits (554), Expect = 7.160e-69
Identity = 104/191 (54.45%), Postives = 138/191 (72.25%), Query Frame = 1 
Query:    1 YDKAMDGMTRVLLKKSDPSGLTYVSDWNGHSNTHKMDHLVCFLAGTLALGSETTDDPL-----RKERDMKTAKALAYTCYQMYKRQKTGLAPELVKFQFGKDMVVEKRAEYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFHNVNNPRETPEDRMESFFLAETLKYMYLIQEPD 558
            YDKAMDG+  +LLK S  SGL ++SDW+GH+N  KMDHLVCF+ G + LG+ T  DPL     R +RD+  AKAL YTC +MY R  TG+APE V F    DM     A++ ILRPET E+LF+++QLTGDPIYR+W++EI+ A ++HCR   G+ +  +VNN +   ++RMESFFLAET+KY+YL Q+PD
Sbjct:    2 YDKAMDGVVNILLKASQ-SGLAFLSDWDGHNNHLKMDHLVCFMPGLMTLGAYT--DPLGLESARAQRDLAVAKALMYTCREMYHRTATGIAPEFVTFDSRNDMNTHTSAKFYILRPETAESLFIMNQLTGDPIYREWAWEIWSAIDRHCRKGSGFASLQDVNNAQSPVDNRMESFFLAETMKYLYLAQDPD 189
[Close]
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Match: B8C1C1_THAPS (alpha-1,2-Mannosidase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1C1_THAPS)

HSP 1 Score: 224 bits (570), Expect = 1.880e-68
Identity = 108/191 (56.54%), Postives = 137/191 (71.73%), Query Frame = 1 
Query:    1 YDKAMDGMTRVLLKKSDPSGLTYVSDWNGHSNTHKMDHLVCFLAGTLALGSETTDDPL-----RKERDMKTAKALAYTCYQMYKRQKTGLAPELVKFQFGKDMVVEKRAEYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFHNVNNPRETPEDRMESFFLAETLKYMYLIQEPD 558
            +D +M G+   LL+KS P+GL+Y++D       HKMDHLVCF+ G LA+G+ T  DPL     R +RD+KTAKAL YTCYQMY R KTG+APE V+F  G D  +   A + ILRPETVEA + L  LTGDPIYR+W +EIFQ+ EK+CR+  GYG+  +V+N    PEDRMESFF+AETLKY YL+ +PD
Sbjct:  233 WDHSMSGVHEQLLQKSSPNGLSYIADRVSGRIDHKMDHLVCFMGGALAIGAYT--DPLGFDSPRAQRDLKTAKALTYTCYQMYARSKTGIAPEFVRFAGGNDFEIPSSAPFYILRPETVEAFYYLSVLTGDPIYREWGWEIFQSIEKYCRVQYGYGSLKHVDNVNMNPEDRMESFFMAETLKYFYLLFDPD 421
[Close]
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Match: D7FS40_ECTSI (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS40_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 2.870e-68
Identity = 106/186 (56.99%), Postives = 138/186 (74.19%), Query Frame = 1 
Query:    1 YDKAMDGMTRVLLKKSDPSGLTYVSDWNGHSNTHKMDHLVCFLAGTLALGSETTDDPLRKERDMKTAKALAYTCYQMYKRQKTGLAPELVKFQFGKDMVVEKRAEYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFHNVNNPRETPEDRMESFFLAETLKYMYLIQEPD 558
            Y+ AMDG+  +L++K+   GLTY+S+WNG    H+MDHL CFLAG LALG+ T+ D  R  RD++T KALAYTCYQMY R  TGL+PE+V+F    DM    +A + ILRPET+E+ FVLHQLTGDP+YR+W +EIF+A E+HCR+ V YG+  +V NP    +D MESFF  ETLKY+YL+ +PD
Sbjct:  535 YEDAMDGVAELLVQKA--RGLTYLSEWNGTRRQHRMDHLACFLAGNLALGAMTSHDSRRAARDLRTGKALAYTCYQMYLRTATGLSPEVVEFNGAGDMRARDQARFYILRPETLESFFVLHQLTGDPVYREWGWEIFRAIERHCRVGVAYGSHPDVENPGLEAKDHMESFFPGETLKYLYLLMQPD 718
[Close]
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Match: A0A7S2PJG9_9STRA (alpha-1,2-Mannosidase n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PJG9_9STRA)

HSP 1 Score: 230 bits (586), Expect = 3.290e-68
Identity = 110/190 (57.89%), Postives = 140/190 (73.68%), Query Frame = 1 
Query:    1 YDKAMDGMTRVLLKKSDPSGLTYVSD-WNGHSNTHKMDHLVCFLAGTLALGSETTD---DPLRKERDMKTAKALAYTCYQMYKRQKTGLAPELVKFQFGKDMVVEKRAEYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFHNVNNPRETPEDRMESFFLAETLKYMYLIQEPD 558
            +DKAM+G+   LL+KS P+GLTY++D  NG    HKMDHL CF+ G+LALG+ T     D  R +RD+KTAKAL YTCYQMY R +TG++PE V+F+ G D  V   A + ILRPE VEA + L  LTGDPIYR+W +E+FQ+ EK+C+   GYG+ H+VN P   PEDRMESFFLAETLKY+YL+ +PD
Sbjct:  527 WDKAMNGVHEQLLQKSTPNGLTYIADRLNGGRLDHKMDHLACFMGGSLALGAYTDPSGIDSSRAKRDLKTAKALTYTCYQMYARTQTGISPEFVQFRGGNDFKVPSSAPFYILRPEVVEAFYYLSVLTGDPIYREWGWEVFQSIEKYCKTEYGYGSLHDVNEPSMKPEDRMESFFLAETLKYLYLLFDPD 716
[Close]
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Match: A0A7S4N8K7_9STRA (alpha-1,2-Mannosidase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8K7_9STRA)

HSP 1 Score: 224 bits (571), Expect = 9.740e-68
Identity = 108/190 (56.84%), Postives = 136/190 (71.58%), Query Frame = 1 
Query:    1 YDKAMDGMTRVLLKKSDPSGLTYVSDWNGHSNTHKMDHLVCFLAGTLALGSETTD---DPLRKERDMKTAKALAYTCYQMYKRQKTGLAPELVKF-QFGKDMVVEKRAEYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFHNVNNPRETPEDRMESFFLAETLKYMYLIQEPD 558
            YD+++ GM   LL KS P+GLTY++D       HKMDHLVCF+ G LALG+ T     D  R +RD+KTAK L YTCYQMY R KTG++PE V F +   D  V   A + ILRPETVE+ FVL+QLTGDP YR+W +E+FQ+ E++CR  + YG+  NVNNP   PEDRMESFFLAET+KY+YL+ +PD
Sbjct:  307 YDRSIQGMHDELLFKSTPTGLTYIADKVSGRVDHKMDHLVCFMGGLLALGAYTDPQGFDSTRAQRDLKTAKELTYTCYQMYARMKTGISPEFVAFGKDSNDFTVGHNAAFYILRPETVESFFVLNQLTGDPAYREWGWEVFQSIERYCRTDIAYGSLTNVNNPGAAPEDRMESFFLAETIKYLYLLFDPD 496
[Close]
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Match: A0A7S4K3S5_9STRA (alpha-1,2-Mannosidase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K3S5_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.830e-67
Identity = 108/189 (57.14%), Postives = 142/189 (75.13%), Query Frame = 1 
Query:    1 YDKAMDGMTRVLLKKSDPSGLTYVSDWNGHSNTHKMDHLVCFLAGTLALGSETTDDPL---RKERDMKTAKALAYTCYQMYKRQKTGLAPELVKFQFGKDMVVEKRAEYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFHNVNNPRETPEDRMESFFLAETLKYMYLIQEPD 558
            YDK++ G+   L+  S PSGLTY+++ +G    HKMDHLVCFL+GTLALG+ T    L   R +RD++TA+ALAYTC+QMY RQ TG++PE+VKF   +D     R  + ILRPE VE+ FVL+QLTGDPIYR+W +EIFQ+ E++CR  + YG+  NVN P + P D+MESFFLAETLKY+YL+Q+PD
Sbjct:  346 YDKSIQGLHDELVHTSQPSGLTYIAERSGAKLDHKMDHLVCFLSGTLALGAYTDPQGLNSSRAQRDLQTARALAYTCHQMYARQATGISPEIVKFIGNEDFEATTRDSFYILRPEAVESFFVLNQLTGDPIYREWGWEIFQSIERYCRTDIAYGSLQNVNKPNDRPMDKMESFFLAETLKYLYLLQDPD 534
[Close]
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Match: B8C1C0_THAPS (alpha-1,2-Mannosidase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1C0_THAPS)

HSP 1 Score: 219 bits (559), Expect = 8.550e-67
Identity = 104/189 (55.03%), Postives = 135/189 (71.43%), Query Frame = 1 
Query:    1 YDKAMDGMTRVLLKKSDPSGLTYVSDWNGHSNTHKMDHLVCFLAGTLALGSETTDDPL---RKERDMKTAKALAYTCYQMYKRQKTGLAPELVKFQFGKDMVVEKRAEYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFHNVNNPRETPEDRMESFFLAETLKYMYLIQEPD 558
            +D++++GM R LL+KS P+GLTY+++ NG    HKM HL CF+AG+LALGS T  D     R +RD+K AKALAYTCYQMY R KTG++PE V F    D  +   A   +LRPE VE+ + L  LTGDPIYR+W +E+FQ+ EK+CR   GYG+  NV+ P   P+D MESFFLAETLKY+YL+ +PD
Sbjct:  233 WDRSVNGMHRNLLQKSSPNGLTYIAEKNGKKMDHKMGHLTCFMAGSLALGSYTDPDGFDSPRAQRDLKAAKALAYTCYQMYARSKTGISPEYVNFNGCDDFHISVSAPNYVLRPEVVESFYYLSVLTGDPIYREWGWEVFQSIEKYCRAQYGYGSLKNVDLPSMQPQDEMESFFLAETLKYLYLLFDPD 421
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15100.3389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK4_ECTSI3.610e-9979.03alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S1GA01_9STRA2.150e-7359.79alpha-1,2-Mannosidase n=1 Tax=Bicosoecida sp. CB-2... [more]
B7S490_PHATC9.010e-7056.99alpha-1,2-Mannosidase (Fragment) n=2 Tax=Phaeodact... [more]
A0A812YES5_SYMMI7.160e-6954.45alpha-1,2-Mannosidase n=1 Tax=Symbiodinium microad... [more]
B8C1C1_THAPS1.880e-6856.54alpha-1,2-Mannosidase n=1 Tax=Thalassiosira pseudo... [more]
D7FS40_ECTSI2.870e-6856.99alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculos... [more]
A0A7S2PJG9_9STRA3.290e-6857.89alpha-1,2-Mannosidase n=2 Tax=Skeletonema marinoi ... [more]
A0A7S4N8K7_9STRA9.740e-6856.84alpha-1,2-Mannosidase n=1 Tax=Odontella aurita Tax... [more]
A0A7S4K3S5_9STRA1.830e-6757.14alpha-1,2-Mannosidase n=1 Tax=Odontella aurita Tax... [more]
B8C1C0_THAPS8.550e-6755.03alpha-1,2-Mannosidase n=1 Tax=Thalassiosira pseudo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15100contigH-elongata_contig15100:931..5204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.3
Seed ortholog evalue1.2e-81
Seed eggNOG ortholog2880.D8LGK4
Preferred nameMAN1A2
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030173,GO:0030323,GO:0030324,GO:0030433,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0034976,GO:0035010,GO:0035295,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048286,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0060541,GO:0070085,GO:0071704,GO:0072347,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1904381
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
EggNOG OGsKOG2204@1,KOG2204@2759
EC3.2.1.113
COG Functional cat.G
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size558
Cds size546
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15100.3389.1prot_H-elongata_contig15100.3389.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15100 943..5204 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929893.573128-UTR-H-elongata_contig15100:930..9421622929893.573128-UTR-H-elongata_contig15100:930..942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15100 931..942 +
1691679198.249014-UTR-H-elongata_contig15100:930..9421691679198.249014-UTR-H-elongata_contig15100:930..942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15100 931..942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929893.584365-CDS-H-elongata_contig15100:942..10351622929893.584365-CDS-H-elongata_contig15100:942..1035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15100 943..1035 +
1691679198.2699428-CDS-H-elongata_contig15100:942..10351691679198.2699428-CDS-H-elongata_contig15100:942..1035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15100 943..1035 +
1622929893.5946062-CDS-H-elongata_contig15100:2757..28561622929893.5946062-CDS-H-elongata_contig15100:2757..2856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15100 2758..2856 +
1691679198.2774549-CDS-H-elongata_contig15100:2757..28561691679198.2774549-CDS-H-elongata_contig15100:2757..2856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15100 2758..2856 +
1622929893.6069868-CDS-H-elongata_contig15100:3558..36421622929893.6069868-CDS-H-elongata_contig15100:3558..3642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15100 3559..3642 +
1691679198.284807-CDS-H-elongata_contig15100:3558..36421691679198.284807-CDS-H-elongata_contig15100:3558..3642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15100 3559..3642 +
1622929893.6202998-CDS-H-elongata_contig15100:4453..45791622929893.6202998-CDS-H-elongata_contig15100:4453..4579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15100 4454..4579 +
1691679198.2921445-CDS-H-elongata_contig15100:4453..45791691679198.2921445-CDS-H-elongata_contig15100:4453..4579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15100 4454..4579 +
1622929893.632572-CDS-H-elongata_contig15100:5060..52041622929893.632572-CDS-H-elongata_contig15100:5060..5204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15100 5061..5204 +
1691679198.2996233-CDS-H-elongata_contig15100:5060..52041691679198.2996233-CDS-H-elongata_contig15100:5060..5204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15100 5061..5204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15100.3389.1

>prot_H-elongata_contig15100.3389.1 ID=prot_H-elongata_contig15100.3389.1|Name=mRNA_H-elongata_contig15100.3389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MDGMTRVLLKKSDPSGLTYVSDWNGHSNTHKMDHLVCFLAGTLALGSETT
DDPLRKERDMKTAKALAYTCYQMYKRQKTGLAPELVKFQFGKDMVVEKRA
EYNILRPETVEALFVLHQLTGDPIYRDWSYEIFQAFEKHCRLPVGYGAFH
NVNNPRETPEDRMESFFLAETLKYMYLIQEPD
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mRNA from alignment at H-elongata_contig15100:931..5204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15100.3389.1 ID=mRNA_H-elongata_contig15100.3389.1|Name=mRNA_H-elongata_contig15100.3389.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4274bp|location=Sequence derived from alignment at H-elongata_contig15100:931..5204+ (Himanthalia elongata Himel1 dioecious)
TACGATAAGGCGATGGACGGTATGACGAGGGTCTTGCTCAAGAAGAGCGA
TCCCAGCGGCCTCACTTACGTGAGCGACTGGAATGGCCATAGCAACACCC
ACAAGGTGATACCCGAGGGAACAGAAGGGCGTTCAATGTGCAGATATGTT
CTAGTGGTGCCGGAGGAGCACTCGAAGACCTTCTCCAGCATGTTCTTGTA
GTCCTCACAATATCCCGATTGCTCCCCACCCCCCCCTCAAAAAAACAAAA
CAAAAACAAAAAATACAATGCAAAGCAAAAAACGTTCTCAAGCATCTAGT
GTTGCGTGGAACAACCTGTGCAATGTTCGCATGGCCGGGCGTACAGACGC
TGCCGGTGCTGCGATTTTTTGGCAAAAAAGAACGCGCTCTCCGATTCGGC
ATGTTTCTTCTATTGGCAAGCGGCAGGCAAGCGCCGTCATCATCGCTGCG
CGTGTACGTAGATTCGTCGGGGGGGAGGGGGGGGGGAGGGGTTGTTTACC
TTTCTATTTTTAAAAAATGAACTCATTCCAACCTTATGACCATCCACATC
TTCTTAGCGCCACGAGAAGTGCAGTCCAGGGGACCAACTATCGTCAGGTT
CGAATGTGTACAATACTAGCTTTGAGCACAAAATCGTCACATGTGATTGG
TCAATCGTGTTTCCCAATAATAGTAAGTTATTGGTCATGTATTCGTCATG
TGGGGACTATGACGACAAACCAAAGCATAGAGCGTGGAATGATAAGAAGA
GGGGGTGCGGGAGAGAGAGAGAGAGGGGGGGGAAGAAAAGGAAGTAACTA
TGAGCTGTGGGATAGATTGATAAGTCTGTATATTTAGTATTATTACACCC
GATGGATCAGTTGGCAACCTCGAAACCTTTTGACGTTGGGACGTGAGTTC
GAATCTCGGCACAGTCACACGAACTGGGATTTTTATTAGAAAAAACCTTG
AACTCATTCCAACCCTCCGAACATCAACACCTTCTTAGCGCCTATTTTTT
GTTGTTGCCACAAGGAGGCTCGTCCACCAGTTACGAGTGGCTACCGCGAC
GATGGTCAGGTTAAACAACGTGCCACCATCGATGATGCTTGTTGCGATGG
TTAGAGCGCCCCCCCCCCCATCCCACCCTCACCCCTCCAATCTCGAGGCC
GTGGGCGAGCGATCGCGGAAACGCAATTCCTGCCCCGCACGTGGTCTCTC
TCATCCTCCGACCCACCCACGCGGTCTGCCTCTTCTATCTATGTGTTTGC
CTGTCTCTGTTCCCCACTGTCTGTCTCTCCCTCTCTCTCTCTCCGTTTAT
CTGTATATTCTAGCGCATGACGTGTGAAACATGAGTTCAGCCGGCTTCAG
GCTTTGTCTCCCCTCCCCTATACACTGTACTACACTATACTATACGATAC
GATACGATACTATATCATACGATACTATACTATACTATACTATACTATAC
TATACTATACTATACTATACTATACTATACTATACTATACTATACTAAAC
TAAACTAAACTATACCATACGATACTATACTATACTATACTATACTATAC
TATACTATACTATACTATACTATACTATACTATACTATACTATACTATAC
TATACTATACTAAACTAAACTATACCATACGATACTATACTATACTATAC
TATACTATACTATACTATATACTGTACTATACTATTCTGTACTATACTGT
ACTATACTAGTCTATACTGTAAGCAAGTAGTTAATGATTCATGATTTGTT
TAGGCTTCATTACCGCCTTAAGTAATAATGATCCATCCCTCTTTATCTTT
GCCTTTACATCGCTCTCAATTGACCAGATGGACCACTTGGTGTGTTTCCT
GGCGGGCACTCTGGCGCTCGGGTCGGAAACGACGGATGATCCACTCAGGA
AGGAACGAGACATGAAGACGGCCAAGGTTGGTGCTTCAGACTACGCTGAG
TGTTGAACCGATGCTTCTACTGTATGTAGAATGTACACAATAGAGCGAGC
GGCAGCACTGCTGCCGATTCGTGGCTTGCATTTTGGCTTGCATTGCTGCC
GATTCGTGCCTTGCATTGTGCCTTGGATGTCGCGATGGGGGAGATGCTTT
TTTTCTTCTTTTTTTCTTCTTCATTTTATTGTGCGTCGGGGAAAAAGTTT
CCGAGATCATTTGGTGTTCGATCCAGCGGGAATAGAAAATAATGGCGGAG
ACGTGGGACGGGCGGGGGGGTGTTCGAGACACGAAGGCATGGGGCCTATG
CCATCGGTGTTCGCCCTCCGTGGTTTCAGCGCTCACTGCTTGCGGCTGCC
GCAATATGTCCCAATGGGGTGGAGTGAATTGTCGTGTGACCTGGCCGTGC
GTGCGGGCACTCCAGTGGTTTGGTGCACGCACGCACGCTTATCCCCCTTC
CCCCTGTCACTCTCATATGTTTTATTTTTTGTCCTTGCTTTGCTTTTTTT
TTTGTAACAACTTTGTCGAGCAACATGCTATTCTTTTGTGCGCGCATGTG
CCGTTTCCTCTCACTACTTTTGTGTCTTTTTTTTAAATATATATATTATG
TGTCAATTGTAACGGTCGATGTGTATGTGTGTGTGGGGGGGGGGGTATCG
GTTTCCGTTTCCGTTTCCGTTATCTCAGGCGCTGGCCTACACGTGTTACC
AGATGTACAAGCGGCAGAAAACGGGGCTCGCGCCCGAGTTGGTCAAATTT
CAATTTGGGAAAGTGAGTTTTTCGCGTGACGCGAAATGAAACACGCTCGA
AGCAACCGCGCCGGTGTACTACGCAGTCGCTTGGCTCAGGTTGAAGAGGG
CGAGGAGTCCACTGGACCCGCATGTGTTTGTGCCGTTATCCTCTTTTATC
AATAATATTCTTTATCCTTCTTTGATCGGTCATCTCCTTTGATAGGTCAA
GAAAACCATTCGGAGGTACACACAGTAGTGCTCTTTAGTTGTTCTTTTGT
TTTAGTCCTGATCTTGCCCTAGCCGGCTTCCCGCCTTCTTCATTTCGAGA
TGCAAAGCTCGTTGTGATGGGTGTTCGTAGTGATAAAGTGGCAGAGAAAA
ATGCGGGGTGGAAAAACGGTGCTGCATCAGTTGGCCAGCGAACGAGCGTT
GCTCTGTTGGTACACCGTAGCTGCAACACAGTTTAGTATAGGATAAGATA
GGATAACAAGATGCTGTAGGTAGGTTTACCACGTTTGAGTTTTGCTTCGC
GGCCGTAGAACTAGCAAAAACAGTAGTGTTATTTAGCACGACTTTATATA
TAATAATTTATGAAATATTAATCGGAGTAAGTATATACTTTAATGAAGTG
TAGCAGTACAGTATGCTATACTATAATATAGTAATATACACTACAGTATA
GTTTAGTATTAATAGGACAACTAATACCTAGTAGTTACCAATCATTGCCT
AGTGTAGAATCACTGTATTAAAAGTATAATAACTATAATGTGCCTTACCG
CATCGCGACATCCACAATCGCCCAATGTCGTGACCCATGTGGTGAACCCA
TGTGGTGAACCATGGTCGAGCAGGATATGGTGGTGGAGAAGAGGGCGGAG
TACAATATCTTGAGGCCAGAGACGGTCGAGGCATTGTTCGTTCTCCACCA
GCTTACCGGTGACCCCATCTACCGCGACTGGAGCTACGAAATATTCCAGG
TGATTTGGTGACTTGATGCGCAAGTAGCCGCTGATTTGACCAAGAGAACC
TATTCATGCGCGAATCCTCTCGTGCTCATCTTGCCCAACTTAGCCTTGGA
AAGGAAGGTGGGAGGGAGGGGCGGACCTGAACTGACATAACTTGATGCTG
TGCTCGTGGGACCTGATCCGAGAGGATTTAGAGGGTGTGTTTTTTTAGGG
TCTGTTTAACGATTTTCGTCCGCGTCCCTTGCAACGCGTGTCGCGTATCT
CGTGTCTCGTTACACCCCGATGATCCGTGGAGCACCGTGAACATTTGTCT
TATTTAATGTACATGGAGGAAGAGGGGGGGGGGGGTCCACAAAAGCACGA
TGAGCATGTCTTCCGTCCCACCCACGTATGTTTCCTCGTTGCGTATGCAC
AACGCGCATTTAAATATCATCCCATGCTTACACGCCATCGGTGGACGGGG
GGACGAACGTTGCCACCAAAATAATTTCAGGCTTTCGAGAAGCACTGCCG
GTTGCCCGTTGGGTACGGGGCCTTCCACAACGTGAACAATCCAAGGGAGA
CGCCCGAGGACCGGATGGAGTCCTTTTTCCTGGCGGAGACCCTCAAGTAC
ATGTACCTTATACAGGAGCCGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig15100:931..5204+

>mRNA_H-elongata_contig15100.3389.1 ID=mRNA_H-elongata_contig15100.3389.1|Name=mRNA_H-elongata_contig15100.3389.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig15100:931..5204+ (Himanthalia elongata Himel1 dioecious)
ATGGACGGTATGACGAGGGTCTTGCTCAAGAAGAGCGATCCCAGCGGCCT
CACTTACGTGAGCGACTGGAATGGCCATAGCAACACCCACAAGATGGACG
GTATGACGAGGGTCTTGCTCAAGAAGAGCGATCCCAGCGGCCTCACTTAC
GTGAGCGACTGGAATGGCCATAGCAACACCCACAAGATGGACCACTTGGT
GTGTTTCCTGGCGGGCACTCTGGCGCTCGGGTCGGAAACGACGGATGATC
CACTCAGGAAGGAACGAGACATGAAGACGGCCAAGATGGACCACTTGGTG
TGTTTCCTGGCGGGCACTCTGGCGCTCGGGTCGGAAACGACGGATGATCC
ACTCAGGAAGGAACGAGACATGAAGACGGCCAAGGCGCTGGCCTACACGT
GTTACCAGATGTACAAGCGGCAGAAAACGGGGCTCGCGCCCGAGTTGGTC
AAATTTCAATTTGGGAAAGCGCTGGCCTACACGTGTTACCAGATGTACAA
GCGGCAGAAAACGGGGCTCGCGCCCGAGTTGGTCAAATTTCAATTTGGGA
AAGATATGGTGGTGGAGAAGAGGGCGGAGTACAATATCTTGAGGCCAGAG
ACGGTCGAGGCATTGTTCGTTCTCCACCAGCTTACCGGTGACCCCATCTA
CCGCGACTGGAGCTACGAAATATTCCAGGATATGGTGGTGGAGAAGAGGG
CGGAGTACAATATCTTGAGGCCAGAGACGGTCGAGGCATTGTTCGTTCTC
CACCAGCTTACCGGTGACCCCATCTACCGCGACTGGAGCTACGAAATATT
CCAGGCTTTCGAGAAGCACTGCCGGTTGCCCGTTGGGTACGGGGCCTTCC
ACAACGTGAACAATCCAAGGGAGACGCCCGAGGACCGGATGGAGTCCTTT
TTCCTGGCGGAGACCCTCAAGTACATGTACCTTATACAGGAGCCGGACGC
TTTCGAGAAGCACTGCCGGTTGCCCGTTGGGTACGGGGCCTTCCACAACG
TGAACAATCCAAGGGAGACGCCCGAGGACCGGATGGAGTCCTTTTTCCTG
GCGGAGACCCTCAAGTACATGTACCTTATACAGGAGCCGGAC
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