mRNA_H-elongata_contig15095.3385.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15095.3385.1
Unique NamemRNA_H-elongata_contig15095.3385.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Match: D7FX94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX94_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 7.140e-123
Identity = 199/282 (70.57%), Postives = 234/282 (82.98%), Query Frame = 1
Query:   10 SDSAGMDTLIDELKAAPDPDTLTLKVSKSVQKVAQPAFFLRIAERAESAPDNEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAAEKNGEFIVPLTQERLGSLRQSIKIHRQQLDNNFLATVQAWMEKCRKAEEMEGMVVILQKILQMYASQDILERQQGSRRGDTGTVGKASNAP--RRTPAGALLDKILETDADQWDGILNGLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGSMAQRVQAEYLSELCKRIENAVPEERPPPGMLE 849
            SDSAGMDT+I++LK APD + LTLKVSK VQ+VAQPAFFLR+AE AE+A D +Q+   + LA +VT+ LERLV+FAEEKMDDSSSLLQI+VTSAAEKNGEF+VPL++ERL +LRQS+KIHR QLDNNFLATVQAWMEK  K EEM+GMVVILQKILQMYASQ+IL     +    TG  G+A  A   +RTPA  LL++IL  DAD+WDG+L GL+  G+GMTGGVTK+GLLGA+QVAVE  +LQQENGSMAQRVQAE+LSELCKRIE A PE+   PGMLE
Sbjct:    2 SDSAGMDTIINDLKEAPDVEVLTLKVSKCVQQVAQPAFFLRLAELAETAEDEQQRVKLENLATQVTSVLERLVEFAEEKMDDSSSLLQIVVTSAAEKNGEFLVPLSEERLTALRQSMKIHRDQLDNNFLATVQAWMEKSGKEEEMQGMVVILQKILQMYASQEILLG--SAEPSATGEAGEADAAAPKKRTPAQLLLEEILNMDADKWDGVLAGLSAVGRGMTGGVTKDGLLGAIQVAVERVILQQENGSMAQRVQAEFLSELCKRIEAACPEQPLGPGMLE 281          
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Match: A0A6S9G5L4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9G5L4_HETAK)

HSP 1 Score: 170 bits (431), Expect = 9.020e-48
Identity = 105/281 (37.37%), Postives = 176/281 (62.63%), Query Frame = 1
Query:    1 IMQSDSAGMDTLIDELKAAPDPDTLTLKVSKSVQKVAQPAFFLRIAERAESAPDNEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAAEKNGEFIVPLTQERLGSLRQSIKIHRQQLDNNFLATVQAWMEKCRKAEEMEGMVVILQKILQMYASQDILERQQGSRRGDTGTVGKASNAPRR---TPAGA-LLDKILETDADQWDGILN-GLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGSMAQRVQAEYLSELCKRIENAVPEER 828
            +  S ++  + +ID ++AA  P+ L   ++K ++KVA P+FF+ IA+RA+ A  + ++ A  RLA E T  L+ L+K AE +MD +  +++ IV SAAE +G+F+VPL+ ER  +++  ++   ++LD+NFL+TV  WM+K  + ++M+GMV ILQ++LQ+YA+  +                    APRR    PA + L D +L++D + W G++  GL    +      + + L+GA+QVA+E+ V+QQENGSM+QRVQAE+L EL + ++    +E+
Sbjct:   47 LRMSTNSDYEYIIDAMRAA-KPEELPGIIAKEIKKVASPSFFMAIADRADKASSDAERDALGRLATEATEILQELLKVAEGQMDQAGKVVEAIVVSAAEPDGQFLVPLSAERKTAMKMVLERFAEELDDNFLSTVSTWMKKAEE-DKMDGMVGILQRVLQLYAANAL-----------------KLGAPRREGEAPASSQLFDDLLDSDPELWRGLVRKGLVEERR-----CSADDLMGAIQVAIESVVMQQENGSMSQRVQAEFLGELIELVKEIQVQEK 303          
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Match: A0A7S1ZNW5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZNW5_TRICV)

HSP 1 Score: 167 bits (424), Expect = 5.770e-46
Identity = 109/274 (39.78%), Postives = 162/274 (59.12%), Query Frame = 1
Query:   25 MDTLIDELKAAPDPDTLTLKVSKSVQKVAQPAFFLRIAERAESAPDNEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAAEKN-GEFIVPLTQERLGSLRQSIK-IHRQQLDNNFLATVQAWMEKCRKAEEMEGMVVILQKILQMYASQDILERQ-----------QGSRRGDTGTVGKASNAPRRTPAGALLDKILETDADQWDGILNGLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGSMAQRVQAEYLSELCKRIE 807
            MD +I +L  A  P  L   VSK+++ V+ P FFLRIAERA+   D  +KA    L+  +   LE +V   E+++D+ + +++ +V +AAE + GEF+VPL+ ER+ ++R+++  I    LD  FL+TV AWM K  + + M+GMV ILQK+LQ+YA  +I   +            G  +G    V          PA ALL+++++TD D WD  L   +++ +   GGV+ + ++G VQ  +E  VL  ENGSMAQRVQAEYL EL  RIE
Sbjct:   99 MDDMITKLSNA-KPYELPQAVSKAIRVVSSPRFFLRIAERADMTDDALEKAKLASLSENLVTTLEAVVSTTEDRLDERAEMVESVVKAAAEPDSGEFLVPLSAERVAAMREALADIESPDLDEGFLSTVDAWMNKSHQ-DGMDGMVAILQKVLQLYAGVEIKRARARLQASVGAAVSGQSQGQADEVVAEQEKGETPPAAALLERLMDTDPDSWDAELR-RSLAAEQEEGGVSSQAIMGEVQRTIEGVVLGLENGSMAQRVQAEYLRELVTRIE 369          
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Match: A0A7S1ZMP8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMP8_TRICV)

HSP 1 Score: 158 bits (399), Expect = 1.370e-43
Identity = 99/250 (39.60%), Postives = 149/250 (59.60%), Query Frame = 1
Query:   97 VQKVAQPAFFLRIAERAESAPDNEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAAEKN-GEFIVPLTQERLGSLRQSIK-IHRQQLDNNFLATVQAWMEKCRKAEEMEGMVVILQKILQMYASQDILERQ-----------QGSRRGDTGTVGKASNAPRRTPAGALLDKILETDADQWDGILNGLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGSMAQRVQAEYLSELCKRIE 807
            ++ V+ P FFLRIAERA+   D  +KA    L+  +   LE +V   E+++D+ + +++ +V +AAE + GEF+VPL+ ER+ ++R+++  I    LD  FL+TV AWM K  + + M+GMV ILQK+LQ+YA  +I   +            G  +G    V          PA ALL+++++TD D WD  L   +++ +   GGV+ + ++G VQ  +E  VL  ENGSMAQRVQAEYL EL  RIE
Sbjct:    1 IRVVSPPRFFLRIAERADMTDDALEKAKLASLSENLVTTLEAVVSTTEDRLDERAEMVESVVKAAAEPDSGEFLVPLSAERVAAMREALADIESPDLDEGFLSTVDAWMNKSHQ-DGMDGMVAILQKVLQLYAGVEIKRARARLQASVGAAVSGQSQGQADEVVAEQEKGETPPAAALLERLMDTDPDSWDAELR-RSLAAEQEEGGVSSQAIMGEVQRTIEGVVLGLENGSMAQRVQAEYLRELVTRIE 248          
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Match: A0A7S2AZA7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZA7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.560e-43
Identity = 99/234 (42.31%), Postives = 143/234 (61.11%), Query Frame = 1
Query:  106 VAQPAFFLRIAERAESAPDNEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAAEKNGEFIVPLTQERLGSLRQSIKIHRQQLDNNFLATVQAWMEKCRKAEEMEGMVVILQKILQMYASQDILERQQGSRRGDTGTVGKASNAPRRTPAGALLDKILETDADQWDGILNGLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGSMAQRVQAEYLSELCKRIE 807
            V+ P FF+RIAE +++A   ++K A   LA  + N LE +V+  EEK+D +S+LLQ I+  AAE +GEF+VPL   +  +LR+++  +R  LD++FL+TVQAWM KC     +EGMV ILQ++LQ+YAS  ++            +V   S A     + ALLDK+  T +D WD +L    +    +    + E LL  VQ  +ET VL QE GS +QRVQAE+L EL +RI+
Sbjct:    3 VSSPTFFVRIAELSDAAKSEDEKMALSSLATNLVNTLEVIVQRTEEKVDGASTLLQEILAVAAEDDGEFMVPLAPAKAAALREAVLENRASLDDSFLSTVQAWMRKCTD-NGLEGMVTILQQVLQLYASSMLIADD---------SVNADSEA---ASSAALLDKVFATSSDGWDALLRESLLGDSPVC---SSELLLAEVQARIETVVLAQEAGSYSQRVQAEFLRELSQRIQ 220          
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Match: A0A7S1FS16_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FS16_9STRA)

HSP 1 Score: 159 bits (401), Expect = 4.880e-43
Identity = 114/277 (41.16%), Postives = 168/277 (60.65%), Query Frame = 1
Query:   10 SDSAGMDTLIDELKAAPDPDTLTLKVSKSVQKVAQPAFFLRIAERAESAPDNEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAA-EKNGEFIVPLTQERLGSLRQSIK-IHRQQLDNNFLATVQAWMEKCRKAEEMEGMVVILQKILQMYASQDILERQQ---GSRRGDTGTVGKASNAPRR-----TPAGALLDKILETDADQWDGILNGLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGSMAQRVQAEYLSELCKRIEN 810
            +D   MD +ID L   P  + L   VS++V+ V  P FF+RIAER++   D+  KA F  LA  +   LE +V   EEK+D +S+ ++ I+ +AA E+ GEF VPL  +++  +  +I+ I    LD  FL TV ++M+K RK + ++GMVVILQK+LQ+YA + I++ +    G+R G T +     +         +P+  LLDKIL++D + WDG+L+  ++  K     V+K  LLG VQ  +E  VL  ENGSMAQRVQAE++ EL  RIEN
Sbjct:   55 TDIQTMDEMIDRLIDVPAYE-LPAAVSRAVRVVGSPLFFVRIAERSDEVKDSATKAKFSALADNIVRTLEVVVSTTEEKLDSNSADVEKIIKAAADEETGEFFVPLNFDQIQKMSAAIREIDPYNLDEGFLTTVDSYMDKSRK-DGLDGMVVILQKVLQLYAGEMIIKGRAENLGARVGATVSGLDPDDVVEEQQSTSSPSSDLLDKILKSDVELWDGLLDS-SIGRKDSD--VSKPQLLGEVQRTMEAVVLGLENGSMAQRVQAEFMRELLMRIEN 326          
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Match: A0A7S1UWK8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWK8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.280e-42
Identity = 105/274 (38.32%), Postives = 161/274 (58.76%), Query Frame = 1
Query:   25 MDTLIDELKAAPDPDTLTLKVSKSVQKVAQPAFFLRIAERAESAPD-NEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAAEKN-GEFIVPLTQERLGSLR-QSIKIHRQQLDNNFLATVQAWMEKCRKAEEMEGMVVILQKILQMYASQDILERQQGSRRG-DTGTVGKASNAPRRTPAGALLDKILETDADQWDGIL-----NGLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGSMAQRVQAEYLSELCKRIENAVP 819
            MD +I +L  A  P  L   V ++ +  + P FFLRIA R + AP  ++ K     LA+ + + LE +V   E+++D  ++ ++ I+ +A+E   GEF+VPL+++RL  +R + +K+   +LD +FL+TV +W  K  K + M+GMVVI QK+LQMYA   +   ++ S++G D  T          TPA  L+DK+LETDAD WD ++     N  + S       +TK  ++  +Q  +ET V   ENGSMAQR+QAEYL EL  R+E+  P
Sbjct:  106 MDEMITKLSRA-QPWELPNAVRRAFRVCSSPQFFLRIASRIDQAPKGSDDKERLSALASNMVSTLEAIVSTTEDQLDSRATSVESILKAASEPGTGEFLVPLSEDRLQDMRTEMLKVDASELDESFLSTVDSWTNKS-KLDGMDGMVVIFQKLLQMYAGLSVSRSREASKKGFDKST----------TPASELMDKLLETDADTWDDVVKEAFSNQKSSSTSSEDALLTKGTIVAEIQKTMETVVFGLENGSMAQRIQAEYLKELLSRVEDVAP 367          
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Match: A0A6T8FN14_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8FN14_9STRA)

HSP 1 Score: 155 bits (392), Expect = 8.410e-42
Identity = 110/269 (40.89%), Postives = 164/269 (60.97%), Query Frame = 1
Query:   25 MDTLIDELKAAPDPDTLTLKVSKSVQKVAQPAFFLRIAERAESAPDNEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAAEK-NGEFIVPLTQERLGSLRQSI-KIHRQQLDNNFLATVQAWMEKCRKAEEMEGMVVILQKILQMYASQDILERQQGSRRGDTGTVGKASNAPRRTPAGALLDKILETDADQWDGILNGLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGSMAQRVQAEYLSELCKRIENAVPEE 825
            +D +I +L AAP  + L   VSK+++ V+ P FFLRIAER + A  + +K     LA  + + LE +V   E+ +DD++  ++ IV +AAE  +GEF+VPL  ER+ S+R+ + +I   +LD  FL T+ +WM K  + + M+GMVVILQK+LQ+YA   I      +R  +TG      +AP  +PA  L +++L  D D WD  L      G+ +   ++ E L+  +Q  +E+ VL  ENGSMAQRVQAEYL EL  R+E A+P+E
Sbjct:   72 IDDMITKLLAAPSHE-LPRVVSKAIRVVSSPRFFLRIAERTDMATSDAEKDKLSELAGNLVSTLEAVVSTTEKVLDDTALDVENIVKAAAEPLSGEFLVPLLPERIASMREVMDQIESPRLDEGFLTTIDSWMNKSGQ-DGMDGMVVILQKVLQIYAGTVI------TRARNTG------DAP--SPAAVLFEELLNMDTDNWDFQLRNKIGEGEEL---LSSEALMAEIQRTIESVVLGLENGSMAQRVQAEYLRELITRVE-AMPQE 320          
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Match: A0A7S0XTZ8_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XTZ8_HEMAN)

HSP 1 Score: 154 bits (389), Expect = 2.700e-41
Identity = 97/248 (39.11%), Postives = 151/248 (60.89%), Query Frame = 1
Query:   85 VSKSVQKVAQPAFFLRIAERAESAPDNEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAAEKNGEFIVPLTQERLGSLRQSIKIHRQQLDNNFLATVQAWMEKCRKAEEMEGMVVILQKILQMYASQDILERQQGSRRGDTGTVGKASNAPRRTPAGALLDKILETDADQWDGILNGLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGSMAQRVQAEYLSELCKRIENAVPEER 828
            V+ +++ V+QP+FF++IAERA+ A D E K     LA  V   LE ++   EEKMDD+S L+Q +++SAAE+NGEF VPL  ER+  +R  +K  R+ +D   LATV A+M+K  + ++++G+V+ILQK+LQ++A+++++                        P   +L+++L  +  +WDG+L     +G+  T     E +  AVQ  VE  VLQQ +GS  QRVQAE+L EL  R++N  PEE+
Sbjct:  105 VAANIKAVSQPSFFIKIAERADEA-DEEGKEKLSALADNVVATLEAVMARTEEKMDDASELVQTLLSSAAEENGEFDVPLKPERVAFMRAKVKEQRELIDEGILATVFAYMKKANE-DQLDGLVLILQKLLQLWAAEELVAA---------------------GPGNEVLERLLLAEESEWDGLLQEAVAAGETDT-----ESMQSAVQSCVERVVLQQASGSHGQRVQAEFLRELLSRLKNT-PEEK 323          
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Match: A0A7S4UFJ3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UFJ3_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.770e-41
Identity = 109/274 (39.78%), Postives = 159/274 (58.03%), Query Frame = 1
Query:   25 MDTLIDELKAAPDPDTLTLKVSKSVQKVAQPAFFLRIAERAESAPDNEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAAE-KNGEFIVPLTQERLGSLRQSI-KIHRQQLDNNFLATVQAWMEKCRKAEEMEGMVVILQKILQMYASQDILE-RQQGSRRGDTGTVGKASNAPRR----------TPAGALLDKILETDADQWDGILNGLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGSMAQRVQAEYLSELCKRIE 807
            MD +I +L  A  P  L   VS++V+ V+ P FFLRIAERA+ A  + +K     LA  + + LE ++   E+++D+ +  ++ +V +AAE ++GEF+VPL+ ER+ +++ ++ K+    LD  FL+TV AWM K  + + M+GMV ILQK+LQMYA   I+  R Q          G++     +          TPA ALL+K++  D D WD  L     +     GG++   L+G VQ  +E  VL  ENGSMAQRVQAEYL EL  RIE
Sbjct:   82 MDDMITKLADA-KPYELPNAVSRAVRVVSSPRFFLRIAERADMATSDIEKEKLSALAENLVSTLEAVLSTTEDRLDERAKEVESVVKAAAEPESGEFLVPLSAERVNAMQTTLRKLDPISLDEGFLSTVDAWMNKSHQ-DGMDGMVGILQKVLQMYAGTAIVRARSQLQANVGAAVSGQSQEQADKVIAKEEEKGLTPAAALLEKLMAMDTDLWDAELRSNITA----EGGISPATLMGEVQRTIEGVVLGLENGSMAQRVQAEYLRELVSRIE 349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15095.3385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX94_ECTSI7.140e-12370.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S9G5L4_HETAK9.020e-4837.37Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1ZNW5_TRICV5.770e-4639.78Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1ZMP8_TRICV1.370e-4339.60Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2AZA7_9STRA1.560e-4342.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1FS16_9STRA4.880e-4341.16Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1UWK8_9STRA3.280e-4238.32Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6T8FN14_9STRA8.410e-4240.89Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0XTZ8_HEMAN2.700e-4139.11Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S4UFJ3_9STRA3.770e-4139.78Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15095contigH-elongata_contig15095:2800..6807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.1
Seed ortholog evalue7.5e-99
Seed eggNOG ortholog2880.D7FX94
EggNOG free text desc.isoform X1
EggNOG OGs28HUF@1,2QQ5J@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_004040.1
Exons7
Model size852
Cds size849
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15095.3385.1prot_H-elongata_contig15095.3385.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15095 2800..6804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.4606807-CDS-H-elongata_contig15095:2799..29401622929892.4606807-CDS-H-elongata_contig15095:2799..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 2800..2940 -
1691679197.8144486-CDS-H-elongata_contig15095:2799..29401691679197.8144486-CDS-H-elongata_contig15095:2799..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 2800..2940 -
1622929892.4726195-CDS-H-elongata_contig15095:3592..38321622929892.4726195-CDS-H-elongata_contig15095:3592..3832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 3593..3832 -
1691679197.824358-CDS-H-elongata_contig15095:3592..38321691679197.824358-CDS-H-elongata_contig15095:3592..3832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 3593..3832 -
1622929892.48348-CDS-H-elongata_contig15095:4382..44571622929892.48348-CDS-H-elongata_contig15095:4382..4457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 4383..4457 -
1691679197.8328338-CDS-H-elongata_contig15095:4382..44571691679197.8328338-CDS-H-elongata_contig15095:4382..4457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 4383..4457 -
1622929892.5007255-CDS-H-elongata_contig15095:4979..50881622929892.5007255-CDS-H-elongata_contig15095:4979..5088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 4980..5088 -
1691679197.8415918-CDS-H-elongata_contig15095:4979..50881691679197.8415918-CDS-H-elongata_contig15095:4979..5088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 4980..5088 -
1622929892.5183291-CDS-H-elongata_contig15095:5644..57301622929892.5183291-CDS-H-elongata_contig15095:5644..5730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 5645..5730 -
1691679197.8503397-CDS-H-elongata_contig15095:5644..57301691679197.8503397-CDS-H-elongata_contig15095:5644..5730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 5645..5730 -
1622929892.532522-CDS-H-elongata_contig15095:6058..61741622929892.532522-CDS-H-elongata_contig15095:6058..6174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 6059..6174 -
1691679197.8642328-CDS-H-elongata_contig15095:6058..61741691679197.8642328-CDS-H-elongata_contig15095:6058..6174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 6059..6174 -
1622929892.5482216-CDS-H-elongata_contig15095:6722..68041622929892.5482216-CDS-H-elongata_contig15095:6722..6804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 6723..6804 -
1691679197.875356-CDS-H-elongata_contig15095:6722..68041691679197.875356-CDS-H-elongata_contig15095:6722..6804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15095 6723..6804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.5637705-UTR-H-elongata_contig15095:6804..68071622929892.5637705-UTR-H-elongata_contig15095:6804..6807Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15095 6805..6807 -
1691679197.882935-UTR-H-elongata_contig15095:6804..68071691679197.882935-UTR-H-elongata_contig15095:6804..6807Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15095 6805..6807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15095.3385.1

>prot_H-elongata_contig15095.3385.1 ID=prot_H-elongata_contig15095.3385.1|Name=mRNA_H-elongata_contig15095.3385.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=283bp
MQSDSAGMDTLIDELKAAPDPDTLTLKVSKSVQKVAQPAFFLRIAERAES
APDNEQKAAFDRLAAEVTNALERLVKFAEEKMDDSSSLLQIIVTSAAEKN
GEFIVPLTQERLGSLRQSIKIHRQQLDNNFLATVQAWMEKCRKAEEMEGM
VVILQKILQMYASQDILERQQGSRRGDTGTVGKASNAPRRTPAGALLDKI
LETDADQWDGILNGLAVSGKGMTGGVTKEGLLGAVQVAVETAVLQQENGS
MAQRVQAEYLSELCKRIENAVPEERPPPGMLE*
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mRNA from alignment at H-elongata_contig15095:2800..6807-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15095.3385.1 ID=mRNA_H-elongata_contig15095.3385.1|Name=mRNA_H-elongata_contig15095.3385.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4008bp|location=Sequence derived from alignment at H-elongata_contig15095:2800..6807- (Himanthalia elongata Himel1 dioecious)
ATTATGCAGTCTGATTCCGCGGGCATGGATACATTGATCGACGAACTGAA AGCAGCTCCCGACCCGGACACGCTGACGCTCAAAGGTATACATGCCATGA GCATTATTGAATAGTTTCATTAAACTTCCATGTTTGGGATTTTCTTCCAT ACAAATTCAAACACCAGCAGTATTCATAATATTTCCCCCTTCCTGTTTCT AGACTCGCCGCTCTGGAGACGAGATCACTCACACGCGGGATAGCCCCTTG CATAGCTCGCCGGAGAACCGATGATGAGCTGCAGAGCAGAACCGTCCAAG CTTAGGGCGTGTTGCCTGAATTCCGTCCGGGCTACGTACAGCTCGGCACG GTGAGGCACTTCTTCCAACCATATTGCCCACTGCTTTGAGCTCTCTCTAC CACAGCGGAGTCTTGTAGTACAGCTACATGCGACACTACGAAGCGTGCAT TGAGTGACGCCCCGGCAATTCGCCAATACATCGCCCGCGAACGCCTCTCT AGCACCATCTTCCATCTAGATGCTCGTCGCCGTGATGTCAAGAAAAATAA ATTCGCGTTCTCTTATACTTCGTATAATTTATTACACATTTTCACCCTCC AAATTAATCGTTACCATTGTGATGAGCCTGCAGTGTCGAAGAGCGTCCAA AAAGTGGCGCAGCCCGCGTTTTTTCTGCGAATCGCGGAGCGGGCCGAGTC GGCGCCAGACAATGAGCAGAAGGCTGCCTTCGATAGGCTTGCAGCCGAGG TCAGCGGCAACTTCGGGAGCTCTACTGCAGCCCTTGAAGCGCTCTGTAAC TTCCGGAGCCCTGTCGAAAAATCAAATGCCGTACGTATATCGAACCCGAT CCAAGGTCTGGTGGAGATGCCCAATCGATCGGCTCGCGACGCGCCGTAAA ATGCTTGGCACCGGGACGGTGGTAAGAGCCGAGTGGCGCTGCCCCGTAAG CCTGCCCTCTCCATCCTTACACTTTTTGTTTTTGTATAATGTTTGTTGGT CAAGTCGTGTGGTGCCCTCCTGAGTTACGCTTTCTCCGCGACAGCGTGAC CGACCTCCCCGCCCCTCCCGACGACAGGTCACCAACGCTCTCGAAAGGCT GGTGAAGTTCGCGGAAGAAAAAATGGATGATTCGTCTTCCCTCTTGCAGA TCATTGTCACAAGGTAGGGAGGCGGGAGGGTACCCAAGTTTTGTATGCCT TAGCTGTTATATAATAAATCACGCGTCGTCGGATCATATCATTGTTGTTG GGGAGGAGGGGGAGAGCGTTCCTGCCATATTTTTATTAAAAAACATGGAA CTCATTCAAACCCTCCGAACATCCACGCCCCTTCTTAGCACCATGAGAGG TGTAGTCCAGGGGACCAACTATCGTCAGGTTCGAATATGGACATTTTTAC TACATCTAAGCGCAAAATTGTCATATTATGTGATTATTCGTGTCCCCCGG TGGTAAATTCATCGGGTCGACGGTTAATGTCGGAGATCCCGTCATTGTCC CGTCCGTTCTGGAAAGCTTCTCACAGCAATGCTCTTTGTACTTAAATCGC AACAGCTTTTCTGTTGGGGTGGAGGCCATGGTTAGGGGGGGGGCGGGCAC GGCTTCATTTATATGGTCACCTAATATTAAGTGTAAATATTGCTGACTGA AAACCGTCCTGATTCAGTCGGTGTTTTTTTTGGTGGGGGCGTTGCCCTTC CGTGTGTTGCGTGCCGCAGCGCTGCCGAGAAAAATGGGGAGTTCATTGTG CCCTTGACCCAAGAACGCCTCGGATCCCTCCGACAGAGCATCAAGATCCA TCGACAACAGCTCGACAACAATTTCCTCGTGAGCTCTCTTTTTCTCTCTT CCCAATCAGTTCTCACGGATGCTTGCGATTTTGACATTTGCTCTATAACC CCCCTCGTCGACCACAAACATGCGCCACACGAGCGCGGTTTTATTTGTCC TCAATCATTCCTCTTCTAGCGTCACTTGATTTCACCGCATTCCACCGTAG AACTCACTCATGCAGAGGGGGGCGCGTGCACGTTCGTCGGGCAAGAAACA ACAAACTCTGCGCTTTCTACCCCATCCGGCCAGTAACTACCGAGCGCGCG AATTCAGTGCGACCGAGCTCTTGCTTGGGTTTGGCCCAGCACAAGTCTAT TTCCTAGCACGTGTTTGACACAATACGGCATAATCTGCGTCGTCGCTTCC GACCTATGCCCTCCCTGTCCCTCTCTCTTCCCCATTGGTTTTCGATATGC GCGCGTTCGGATGGTGGGTCTGTATGATGTAACGGGAAAAAACCGCACCG CCGCTCCGGTCGATCGACCGGTCGGTTATAAAAAATCTTGGCGTGCGAAG GCCACCGTTCAGGCGTGGATGGAGAAGTGCAGAAAAGCGGAGGAGATGGA AGGCATGGTCGTCATACTCCAGAAGGTATGTACCGCGGCGATGTTGTCCT TAGACAAAGAAACGGACCCAAGGATTGAGTTGCTATATGAGGCATCACGC GGATTTCGGAGTCTTGTCTTCTGTTGCGTCGGACGTTTCGTTTGCTGTCC CCAGGGGTCGGGGGAGTACCTCTGTGGGGGGGTAGGGAGTGAAGGGGGCA AAGAAGCTGGGGGGGGGGTTAATTTGTTTGGAGGACTACGGACGACGAGT AGTACCTTACCCACTGAATATTAATCGATCACCGGGTGCTGCTTTTCCAG GTCGAGTGGGTCGCGTCCCCGCCGCGGATTCCTTCTTCTCAACCGTTCAC GCGACCCTTAGGTTACTCTCGCGAGTAATTTTTCATACGTGCGTTCGCTC GCTGCCAACTGTAAATGCTCGCGCTCTCCAAGCTCCCGGTATCTCGGAAG CCCACTACACCTGGACGACCTTGCGTTGTCACAAGGGTCTCACGCCAACC CGAGCCCCGTATTCCCAACGCGCAAGCACGAACCCCCTTCGCCTTTTGCA CCTCGCTCCCCCGATACCGCGACAGATCCTACAGATGTACGCGTCGCAAG ACATCCTCGAGAGGCAGCAGGGATCGAGGCGGGGAGACACGGGAACGGTA GGCAAGGCCTCCAATGCACCAAGACGAACGCCCGCAGGGGCGCTCCTGGA CAAGATACTGGAGACGGACGCCGACCAATGGGACGGGATACTGAACGGCC TGGCGGTTTCGGGAAAGGGTATGACAGGCGGGGTGACCAAAGAAGGTCTC TTGGGGGCCGTGCAGGTGAGTTTTTCTGTTTGGTGGGGGGGAGGGGGAAG AGGAGGGGCGCTCGTGTCAGAAATATTCGGATATCATCGCTAGAGGGTTC GGCGGAAGGTGGTTCCTTATGGAGCTAAGGGTTAGTAGAAGTCAAAAGTG ATGACGAGAAGATACTTTTAAAAGCATATTACCCATATTTTCGTTGCTGC CCTCACGCTACAGAGCTTCAGGCGTATGAGTCGTGCATTGGGACAGAATA ACACGAGATCAACCGCTCTCTAAAAAAGCATTGGTACAGTAGAAACGTCT CTCTTTCTCTGGATGTATACCTCCACAGTTTCGGCGGCAAGGCGCGCGAC GTCGACGATCGAATTGTTTTTTTTTTAGTTTGTGTGCACCCCGCTTGTCG ACATTGACGGCATGCTCTCTGTATCATTCGTGTCTCTCTATGCGATGGCA TTCATAGCTCGTCGGACTTTTTTTTGTATTTGTACTTCGTACGTACGTAC GGCCGGTCTGTTTCTCAAAAGAGCTCTTGGTGTATCGGAAATATTTAACT CCCGGGAAGCGACTTGCATTCTGTTTCGCCAACCGTGTTCCCCGGCGCGA ACAATCGATGCTAACAAACACGCCGTTGACCCGGACCGGACGCGCGCCCT CCGCACGTCCCGCGCAGGTGGCGGTAGAGACGGCGGTCTTGCAGCAAGAG AACGGTAGCATGGCCCAGAGGGTGCAGGCCGAGTATCTCTCGGAGCTGTG CAAAAGAATAGAAAACGCCGTGCCGGAGGAGCGACCGCCGCCAGGCATGC TCGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig15095:2800..6807-

>mRNA_H-elongata_contig15095.3385.1 ID=mRNA_H-elongata_contig15095.3385.1|Name=mRNA_H-elongata_contig15095.3385.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at H-elongata_contig15095:2800..6807- (Himanthalia elongata Himel1 dioecious)
ATGCAGTCTGATTCCGCGGGCATGGATACATTGATCGACGAACTGAAAGC
AGCTCCCGACCCGGACACGCTGACGCTCAAAGATGCAGTCTGATTCCGCG
GGCATGGATACATTGATCGACGAACTGAAAGCAGCTCCCGACCCGGACAC
GCTGACGCTCAAAGTGTCGAAGAGCGTCCAAAAAGTGGCGCAGCCCGCGT
TTTTTCTGCGAATCGCGGAGCGGGCCGAGTCGGCGCCAGACAATGAGCAG
AAGGCTGCCTTCGATAGGCTTGCAGCCGAGTGTCGAAGAGCGTCCAAAAA
GTGGCGCAGCCCGCGTTTTTTCTGCGAATCGCGGAGCGGGCCGAGTCGGC
GCCAGACAATGAGCAGAAGGCTGCCTTCGATAGGCTTGCAGCCGAGGTCA
CCAACGCTCTCGAAAGGCTGGTGAAGTTCGCGGAAGAAAAAATGGATGAT
TCGTCTTCCCTCTTGCAGATCATTGTCACAAGGTCACCAACGCTCTCGAA
AGGCTGGTGAAGTTCGCGGAAGAAAAAATGGATGATTCGTCTTCCCTCTT
GCAGATCATTGTCACAAGCGCTGCCGAGAAAAATGGGGAGTTCATTGTGC
CCTTGACCCAAGAACGCCTCGGATCCCTCCGACAGAGCATCAAGATCCAT
CGACAACAGCTCGACAACAATTTCCTCCGCTGCCGAGAAAAATGGGGAGT
TCATTGTGCCCTTGACCCAAGAACGCCTCGGATCCCTCCGACAGAGCATC
AAGATCCATCGACAACAGCTCGACAACAATTTCCTCGCCACCGTTCAGGC
GTGGATGGAGAAGTGCAGAAAAGCGGAGGAGATGGAAGGCATGGTCGTCA
TACTCCAGAAGGCCACCGTTCAGGCGTGGATGGAGAAGTGCAGAAAAGCG
GAGGAGATGGAAGGCATGGTCGTCATACTCCAGAAGATCCTACAGATGTA
CGCGTCGCAAGACATCCTCGAGAGGCAGCAGGGATCGAGGCGGGGAGACA
CGGGAACGGTAGGCAAGGCCTCCAATGCACCAAGACGAACGCCCGCAGGG
GCGCTCCTGGACAAGATACTGGAGACGGACGCCGACCAATGGGACGGGAT
ACTGAACGGCCTGGCGGTTTCGGGAAAGGGTATGACAGGCGGGGTGACCA
AAGAAGGTCTCTTGGGGGCCGTGCAGATCCTACAGATGTACGCGTCGCAA
GACATCCTCGAGAGGCAGCAGGGATCGAGGCGGGGAGACACGGGAACGGT
AGGCAAGGCCTCCAATGCACCAAGACGAACGCCCGCAGGGGCGCTCCTGG
ACAAGATACTGGAGACGGACGCCGACCAATGGGACGGGATACTGAACGGC
CTGGCGGTTTCGGGAAAGGGTATGACAGGCGGGGTGACCAAAGAAGGTCT
CTTGGGGGCCGTGCAGGTGGCGGTAGAGACGGCGGTCTTGCAGCAAGAGA
ACGGTAGCATGGCCCAGAGGGTGCAGGCCGAGTATCTCTCGGAGCTGTGC
AAAAGAATAGAAAACGCCGTGCCGGAGGAGCGACCGCCGCCAGGCATGCT
CGAGTGAGTGGCGGTAGAGACGGCGGTCTTGCAGCAAGAGAACGGTAGCA
TGGCCCAGAGGGTGCAGGCCGAGTATCTCTCGGAGCTGTGCAAAAGAATA
GAAAACGCCGTGCCGGAGGAGCGACCGCCGCCAGGCATGCTCGAGTGA
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