mRNA_H-elongata_contig150756.3380.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150756.3380.1
Unique NamemRNA_H-elongata_contig150756.3380.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig150756.3380.1 vs. uniprot
Match: D8LCC9_ECTSI (DUF547 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.630e-19
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   61 IRDDPNFETFVESFETVQVSGLGKDAEYALWINSYNALAIKMVIDHPCKK 210
            +RDDPNFETFVES +    SGLGKDAEYALWIN+YNALAIKMV D+PCKK
Sbjct:   75 VRDDPNFETFVESLKNAPTSGLGKDAEYALWINTYNALAIKMVTDNPCKK 124
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BLAST of mRNA_H-elongata_contig150756.3380.1 vs. uniprot
Match: A0A7S1S9W6_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1S9W6_ALECA)

HSP 1 Score: 65.5 bits (158), Expect = 6.320e-12
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   55 SAIRDDPNFETFVESFETVQVSGLGKDAEYALWINSYNALAIKMVIDHPCKK 210
            +A+  D +F  FV+S E   V+ LGK+  YAL++N+YNALAIKMV DHPCK+
Sbjct:   50 AAVARDSDFSAFVQSLEAADVASLGKNETYALFMNAYNALAIKMVADHPCKR 101
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BLAST of mRNA_H-elongata_contig150756.3380.1 vs. uniprot
Match: A0A849E8E1_9HYPH (DUF547 domain-containing protein n=1 Tax=Anderseniella sp. TaxID=1872568 RepID=A0A849E8E1_9HYPH)

HSP 1 Score: 48.9 bits (115), Expect = 5.520e-5
Identity = 22/66 (33.33%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:    1 KSFAPRGDADPNTSGFSTSAIRDDPNFETFVESFETVQVSGLGKDAEYALWINSYNALAIKMVIDH 198
            K +   G A  NT  +   +  D    + +V S E ++V+G  K+ + A W+N YNA+ I++V+DH
Sbjct:   58 KKYIKPGRAGLNTFAYGKVSAADKAALQNYVRSLEAIEVTGYNKNEQLAYWLNLYNAVTIRVVLDH 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150756.3380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCC9_ECTSI1.630e-1980.00DUF547 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S1S9W6_ALECA6.320e-1255.77Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A849E8E1_9HYPH5.520e-533.33DUF547 domain-containing protein n=1 Tax=Anderseni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150756contigH-elongata_contig150756:1246..1455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue5.7e-16
Seed eggNOG ortholog2880.D8LCC9
Preferred nameZRT3
KEGG koko:K07238
KEGG TC2.A.5.5
GOsGO:0000041,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006873,GO:0006875,GO:0006882,GO:0007034,GO:0008150,GO:0008324,GO:0009987,GO:0012505,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031090,GO:0031224,GO:0031984,GO:0034220,GO:0034486,GO:0042175,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070838,GO:0070839,GO:0071577,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0098827,GO:0098852,GO:0140147
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsCOG0428@1,KOG2474@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF547
Ec32 orthologEc-14_005220.1
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.100161-CDS-H-elongata_contig150756:1245..14551622929892.100161-CDS-H-elongata_contig150756:1245..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150756 1246..1455 +
1691679197.618694-CDS-H-elongata_contig150756:1245..14551691679197.618694-CDS-H-elongata_contig150756:1245..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150756 1246..1455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150756.3380.1prot_H-elongata_contig150756.3380.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150756 1246..1455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150756.3380.1

>prot_H-elongata_contig150756.3380.1 ID=prot_H-elongata_contig150756.3380.1|Name=mRNA_H-elongata_contig150756.3380.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
KSFAPRGDADPNTSGFSTSAIRDDPNFETFVESFETVQVSGLGKDAEYAL
WINSYNALAIKMVIDHPCKK
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mRNA from alignment at H-elongata_contig150756:1246..1455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150756.3380.1 ID=mRNA_H-elongata_contig150756.3380.1|Name=mRNA_H-elongata_contig150756.3380.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig150756:1246..1455+ (Himanthalia elongata Himel1 dioecious)
AAATCGTTCGCCCCTCGCGGGGATGCTGACCCCAACACTTCCGGTTTTTC
AACATCAGCTATTCGAGACGACCCCAATTTCGAAACATTTGTGGAGTCTT
TCGAGACAGTCCAAGTCTCCGGGCTTGGGAAGGACGCCGAGTACGCTCTC
TGGATCAACAGCTACAATGCCCTCGCCATCAAGATGGTCATCGATCACCC
GTGCAAGAAA
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Coding sequence (CDS) from alignment at H-elongata_contig150756:1246..1455+

>mRNA_H-elongata_contig150756.3380.1 ID=mRNA_H-elongata_contig150756.3380.1|Name=mRNA_H-elongata_contig150756.3380.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig150756:1246..1455+ (Himanthalia elongata Himel1 dioecious)
AAATCGTTCGCCCCTCGCGGGGATGCTGACCCCAACACTTCCGGTTTTTC
AACATCAGCTATTCGAGACGACCCCAATTTCGAAACATTTGTGGAGTCTT
TCGAGACAGTCCAAGTCTCCGGGCTTGGGAAGGACGCCGAGTACGCTCTC
TGGATCAACAGCTACAATGCCCTCGCCATCAAGATGGTCATCGATCACCC
GTGCAAGAAAAAATCGTTCGCCCCTCGCGGGGATGCTGACCCCAACACTT
CCGGTTTTTCAACATCAGCTATTCGAGACGACCCCAATTTCGAAACATTT
GTGGAGTCTTTCGAGACAGTCCAAGTCTCCGGGCTTGGGAAGGACGCCGA
GTACGCTCTCTGGATCAACAGCTACAATGCCCTCGCCATCAAGATGGTCA
TCGATCACCCGTGCAAGAAA
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