mRNA_H-elongata_contig150633.3376.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150633.3376.1
Unique NamemRNA_H-elongata_contig150633.3376.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig150633.3376.1 vs. uniprot
Match: D7G847_ECTSI (NTP_transf_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G847_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.360e-28
Identity = 50/70 (71.43%), Postives = 62/70 (88.57%), Query Frame = 2 
Query:   23 GKQEEAHGGRENRENMAEDLRSWFCQLTTQERVQAIAVEDVVWIRLFNILYRKHKSWMRQQGTPPTWDRD 232
            G +E+   G + RE+MAEDL SWFCQL+TQER+QAIAV+DV+WIRLFN+LYRKHKSWM Q+GTPPTW+R+
Sbjct:    2 GIEEDTQRGWKRREDMAEDLSSWFCQLSTQERLQAIAVDDVIWIRLFNVLYRKHKSWMSQRGTPPTWERE 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150633.3376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G847_ECTSI2.360e-2871.43NTP_transf_2 domain-containing protein n=2 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150633contigH-elongata_contig150633:24..865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog2880.D7G847
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size236
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150633.3376.1prot_H-elongata_contig150633.3376.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150633 24..849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.5591028-CDS-H-elongata_contig150633:23..1341622929891.5591028-CDS-H-elongata_contig150633:23..134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150633 24..134 -
1691679197.305947-CDS-H-elongata_contig150633:23..1341691679197.305947-CDS-H-elongata_contig150633:23..134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150633 24..134 -
1622929891.5697129-CDS-H-elongata_contig150633:741..8491622929891.5697129-CDS-H-elongata_contig150633:741..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150633 742..849 -
1691679197.3152542-CDS-H-elongata_contig150633:741..8491691679197.3152542-CDS-H-elongata_contig150633:741..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150633 742..849 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.5793478-UTR-H-elongata_contig150633:849..8651622929891.5793478-UTR-H-elongata_contig150633:849..865Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150633 850..865 -
1691679197.3226056-UTR-H-elongata_contig150633:849..8651691679197.3226056-UTR-H-elongata_contig150633:849..865Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150633 850..865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150633.3376.1

>prot_H-elongata_contig150633.3376.1 ID=prot_H-elongata_contig150633.3376.1|Name=mRNA_H-elongata_contig150633.3376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MDGKQEEAHGGRENRENMAEDLRSWFCQLTTQERVQAIAVEDVVWIRLFN
ILYRKHKSWMRQQGTPPTWDRDQ
back to top

mRNA from alignment at H-elongata_contig150633:24..865-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150633.3376.1 ID=mRNA_H-elongata_contig150633.3376.1|Name=mRNA_H-elongata_contig150633.3376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=842bp|location=Sequence derived from alignment at H-elongata_contig150633:24..865- (Himanthalia elongata Himel1 dioecious)
CGGACCGGTCCTGATCATGGACGGAAAGCAGGAGGAAGCCCACGGAGGGC
GGGAGAACAGAGAAAATATGGCAGAAGATTTACGATCATGGTTTTGCCAA
CTCACGACACAGGAAAGAGTTCAGGTAACACAAGTGTTTGCTTCGCAGAG
AGCACCTCCTCGTCGTCTCTCGCGCGAGGACTCTGTTTTGAGACTAATCC
TCGTGGCCGACTTTTGCCTCCGAATGCACCACAGCTGCGCTTGAATTATG
CGAACCTCGATCGGCTGATGTTATCACAAAAGCCGCAGTTGTGGTGGCAT
CATGATTTCATGCCCAAAGTGATGACTTGTCCATGTTGAAATTTCGGGTG
TGAGATACTGATGACGAACCTCATCTTCTCCCTCAGCAAGTTCCATGAGC
CTACCGACAGTACCGTGTACCTGTTGGTGTCTCCCTTCGACGATACACCT
TGACCTTATGTGAAAACGCTCCGTTGTCTTTCGATTTTTTCAATCGATTG
GAGTCTCCGTGGCCTCCTGCTAACCCTTCTTTGGGAGATGGGTGCAGAGC
GTGACCGACCGGTATGCGCGACCTTGGCGTGAAGAGTAGAGCACGTTATT
TTCTTGCCTGGATGGAAGCATCATTTATTCGGAACTTTGCTTCGCGTTGC
CCCGATCGACCGTCTCTTCGTCCATCCCACCTGCCCAACCTCGCTACGCC
GCACGCTCACGTCTCCAACGGGCGCTTGCAGGCGATTGCCGTGGAGGACG
TCGTTTGGATCCGACTTTTTAACATCCTATACCGCAAGCACAAATCGTGG
ATGCGGCAGCAGGGCACGCCGCCGACGTGGGACCGAGATCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig150633:24..865-

>mRNA_H-elongata_contig150633.3376.1 ID=mRNA_H-elongata_contig150633.3376.1|Name=mRNA_H-elongata_contig150633.3376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig150633:24..865- (Himanthalia elongata Himel1 dioecious)
ATGGACGGAAAGCAGGAGGAAGCCCACGGAGGGCGGGAGAACAGAGAAAA
TATGGCAGAAGATTTACGATCATGGTTTTGCCAACTCACGACACAGGAAA
GAGTTCAGATGGACGGAAAGCAGGAGGAAGCCCACGGAGGGCGGGAGAAC
AGAGAAAATATGGCAGAAGATTTACGATCATGGTTTTGCCAACTCACGAC
ACAGGAAAGAGTTCAGGCGATTGCCGTGGAGGACGTCGTTTGGATCCGAC
TTTTTAACATCCTATACCGCAAGCACAAATCGTGGATGCGGCAGCAGGGC
ACGCCGCCGACGTGGGACCGAGATCAGGCGATTGCCGTGGAGGACGTCGT
TTGGATCCGACTTTTTAACATCCTATACCGCAAGCACAAATCGTGGATGC
GGCAGCAGGGCACGCCGCCGACGTGGGACCGAGATCAG
back to top