mRNA_H-elongata_contig150610.3375.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150610.3375.1
Unique NamemRNA_H-elongata_contig150610.3375.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Match: A0A6H5L1Y5_9PHAE (MGS-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1Y5_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 9.590e-48
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    7 DVRTKKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR 279
            DVRTK  LPE+AQRDLVVASI AKYTQSNSVGYA RGQM+GVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGL+FKDG+KRQDRVNARVR
Sbjct:  422 DVRTKSTLPEEAQRDLVVASICAKYTQSNSVGYAKRGQMVGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLQFKDGTKRQDRVNARVR 512
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BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Match: A0A7S2G180_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G180_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.560e-41
Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 TQDVRTKKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR 279
            T  + TK  +PE A RDLV+ASIT KYTQSNSV YA  GQ+IGVGAGQQSRVDCVKLA RKVS+WW R HPKVQ L+FK+GSKRQDRVNARVR
Sbjct:   32 TNVITTKTDVPESAVRDLVLASITIKYTQSNSVAYAVNGQIIGVGAGQQSRVDCVKLAGRKVSIWWCRQHPKVQALQFKEGSKRQDRVNARVR 124
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BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Match: A0A836CED7_9STRA (Putative bifunctional purine synthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.830e-38
Identity = 70/92 (76.09%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    4 QDVRTKKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR 279
            + V+TK ALP+ A+RDL+VASI  KYTQSNSVGY+  GQM+GVGAGQQSRVDCVKLA RKV +W LRHHPKV+ LKFK G KRQDRVNARVR
Sbjct:  424 EQVKTKAALPDAAKRDLIVASIAVKYTQSNSVGYSKNGQMVGVGAGQQSRVDCVKLAGRKVEIWRLRHHPKVKALKFKAGVKRQDRVNARVR 515
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BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Match: A0A7S1YVF7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YVF7_TRICV)

HSP 1 Score: 134 bits (336), Expect = 1.040e-37
Identity = 67/87 (77.01%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:   19 KKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR 279
            K AL EDAQRD++VASI  KYTQSNSVG+A  G M+GVGAGQQSRVDCVKLA RKV  W+LR HPKV GLKF  G KRQDRVNARVR
Sbjct:   66 KAALTEDAQRDMIVASICVKYTQSNSVGFAKDGMMVGVGAGQQSRVDCVKLAGRKVKTWYLRQHPKVLGLKFAKGVKRQDRVNARVR 152
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BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Match: A0A7S2YT67_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YT67_9STRA)

HSP 1 Score: 140 bits (353), Expect = 4.800e-37
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:   10 VRTKKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR 279
            V TKK L +DA+RDL+VASI  KYTQSNSVG+A  G M+GVGAGQQSRVDCVKLA RKVS W+LR HPKV GL+FKDG KRQDRVNARVR
Sbjct:  430 VTTKKVLGDDAERDLIVASICIKYTQSNSVGFAKDGMMVGVGAGQQSRVDCVKLAGRKVSTWYLRQHPKVLGLEFKDGVKRQDRVNARVR 519
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BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Match: A0A7S3PBJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBJ5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 7.640e-37
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:   10 VRTKKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR 279
            V +KK L E AQRDL++ASI  KYTQSNSVG+A  G M+GVGAGQQSRVDCVKLA RKV+ W+LR HPKV  L FK+G KRQDRVNARVR
Sbjct:   55 VTSKKELSEGAQRDLILASICIKYTQSNSVGFAKNGMMVGVGAGQQSRVDCVKLAGRKVATWFLRQHPKVLALPFKEGVKRQDRVNARVR 144
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BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Match: A0A7S1TNZ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNZ2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 9.100e-37
Identity = 66/91 (72.53%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    7 DVRTKKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR 279
            +V T + L EDA RD+V+  IT KYTQSNSVGY+  GQM+GVGAGQQSRVDC KLA RKV +WW+R HPKV+GLKFKDG KR DRVNARVR
Sbjct:  226 NVVTGETLSEDAVRDMVLGCITLKYTQSNSVGYSAGGQMLGVGAGQQSRVDCTKLAGRKVEIWWMRQHPKVRGLKFKDGRKRTDRVNARVR 316
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BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Match: A0A812THX5_SYMPI (ATIC protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812THX5_SYMPI)

HSP 1 Score: 139 bits (351), Expect = 1.190e-36
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:   10 VRTKKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR 279
            V + K +P+ AQ+DL++ASI  KYTQSNSVGY+  G M+GVGAGQQSRVDCVKLA RKV+ WWLR HPKV+GL FKDG KRQDRVNARVR
Sbjct:  468 VTSSKTIPDKAQKDLILASIAIKYTQSNSVGYSKNGMMVGVGAGQQSRVDCVKLAGRKVATWWLRFHPKVKGLPFKDGVKRQDRVNARVR 557
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BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Match: A0A813BYS5_9DINO (ADE16 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A813BYS5_9DINO)

HSP 1 Score: 139 bits (350), Expect = 1.220e-36
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:   10 VRTKKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR 279
            V   K +P+ AQ+DL++ASI  KYTQSNSVGY+  G M+GVGAGQQSRVDCVKLA RKV+ WWLR HPKV+GL FKDG KRQDRVNARVR
Sbjct:  425 VTASKTIPDKAQKDLILASIAIKYTQSNSVGYSKNGMMVGVGAGQQSRVDCVKLAGRKVATWWLRFHPKVKGLPFKDGVKRQDRVNARVR 514
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BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Match: A0A6S9H1W5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H1W5_HETAK)

HSP 1 Score: 139 bits (349), Expect = 1.660e-36
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    7 DVRTKKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQSRVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR 279
            DVR   AL EDA+RDL++ASIT KYTQSNSVG+A  GQM+GVGAGQQSRVDCVKLA RKV+VWWLR HPKV GL FK G KRQD+VNARVR
Sbjct:  422 DVRAG-ALTEDARRDLLLASITLKYTQSNSVGFARSGQMVGVGAGQQSRVDCVKLAGRKVAVWWLRQHPKVMGLAFKAGVKRQDKVNARVR 511
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150610.3375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Y5_9PHAE9.590e-4891.21MGS-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2G180_9STRA3.560e-4176.34Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836CED7_9STRA4.830e-3876.09Putative bifunctional purine synthesis protein n=1... [more]
A0A7S1YVF7_TRICV1.040e-3777.01Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2YT67_9STRA4.800e-3777.78Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3PBJ5_9STRA7.640e-3773.33Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S1TNZ2_9STRA9.100e-3772.53Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A812THX5_SYMPI1.190e-3673.33ATIC protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A813BYS5_9DINO1.220e-3673.33ADE16 protein n=3 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A6S9H1W5_HETAK1.660e-3678.02Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150610contigH-elongata_contig150610:89..998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue3.4e-40
Seed eggNOG ortholog2880.D8LKS8
Preferred nameATIC
KEGG rclassRC00026,RC00263,RC00456
KEGG koko:K00602,ko:K06943
KEGG ReactionR01127,R04560
KEGG Pathwayko00230,ko00670,ko01100,ko01110,ko01130,ko01523,ko03008,map00230,map00670,map01100,map01110,map01130,map01523,map03008
KEGG ModuleM00048
GOsGO:0000003,GO:0003006,GO:0003360,GO:0003674,GO:0003824,GO:0003937,GO:0004643,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006760,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009108,GO:0009116,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009235,GO:0009259,GO:0009260,GO:0009396,GO:0009611,GO:0009653,GO:0009987,GO:0010035,GO:0015980,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0021537,GO:0021543,GO:0021549,GO:0021987,GO:0022037,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030435,GO:0030437,GO:0030900,GO:0030902,GO:0031099,GO:0031100,GO:0032501,GO:0032502,GO:0032505,GO:0033013,GO:0034293,GO:0034641,GO:0034654,GO:0042060,GO:0042221,GO:0042398,GO:0042558,GO:0042559,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043934,GO:0043935,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045333,GO:0046040,GO:0046390,GO:0046394,GO:0046452,GO:0046483,GO:0046653,GO:0046654,GO:0046983,GO:0048468,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051188,GO:0051321,GO:0051704,GO:0055086,GO:0055114,GO:0060322,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1903046
EggNOG free text desc.IMP cyclohydrolase activity
EggNOG OGsCOG0138@1,KOG2555@2759
EC2.1.2.3,3.5.4.10
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.5071084-CDS-H-elongata_contig150610:88..1841622929891.5071084-CDS-H-elongata_contig150610:88..184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150610 89..184 -
1691679197.287601-CDS-H-elongata_contig150610:88..1841691679197.287601-CDS-H-elongata_contig150610:88..184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150610 89..184 -
1622929891.51907-CDS-H-elongata_contig150610:815..9981622929891.51907-CDS-H-elongata_contig150610:815..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150610 816..998 -
1691679197.2973542-CDS-H-elongata_contig150610:815..9981691679197.2973542-CDS-H-elongata_contig150610:815..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150610 816..998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150610.3375.1prot_H-elongata_contig150610.3375.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150610 89..998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150610.3375.1

>prot_H-elongata_contig150610.3375.1 ID=prot_H-elongata_contig150610.3375.1|Name=mRNA_H-elongata_contig150610.3375.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
TQDVRTKKALPEDAQRDLVVASITAKYTQSNSVGYATRGQMIGVGAGQQS
RVDCVKLAARKVSVWWLRHHPKVQGLKFKDGSKRQDRVNARVR
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mRNA from alignment at H-elongata_contig150610:89..998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150610.3375.1 ID=mRNA_H-elongata_contig150610.3375.1|Name=mRNA_H-elongata_contig150610.3375.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=910bp|location=Sequence derived from alignment at H-elongata_contig150610:89..998- (Himanthalia elongata Himel1 dioecious)
ACCCAGGACGTGCGCACAAAGAAGGCGCTTCCCGAGGATGCGCAGCGCGA
CCTGGTGGTGGCCTCTATCACCGCCAAGTATACACAGTCAAACTCCGTTG
GCTACGCGACGCGCGGCCAGATGATCGGGGTCGGGGCCGGACAGCAGAGC
CGCGTGGACTGCGTCAAGCTCGCGGCAAGGAAGGTGCGCTTCGTCCCTGA
GTTGGTCATGAAGATGAACCATAAAAGGATGCAACCAAGATTAAACGACT
CGGACTCTTCCCGTAATTTTCCTGTGCTTTTTGGGAGGGGGAGGGTAGAA
GACAGGTGCCTATAAGTTTATATTTTCATCTCCCTTCCCCCCCTAACAGC
TAATGCATAAAAACTTGAGTACGCCCCTCCTCCCCGGCCCTAGATAACGC
CCTCCCCTCCTCTCTTCGCATGTTAGCAGTTGTACCAGACGCACGTTTTT
GCTTTCCGTGGCCCAATATATCTTGATCAGAGTAACAAGAGAGATCTTGG
CGTGAAGTGTTGAGAAACCAGACCCGCCCCGGCAACTATAATAGAGGGAG
GGAGGTGGGGGTTCAATGCATCAGCTCGAATAAGCTTTTATATTAAAAAA
AATATACATGAACTTATTCCAACTCTTGGAACATCCACACCTTCTTAGCA
CCGTGAGAGGTGCAATCCAGGGGACCAACTATCGTCAGATTCGAATGCGT
ACAACACTACTACCTTTTGAGTACAAAATCGTCACACGGAATACATTATT
CGGTATGTATGTGGGAACGCCAAGCCAAAGTATAGAGAGTAAACTGTGTA
ATTTCGCCCGCCAGGTGTCGGTATGGTGGTTGAGGCACCATCCCAAGGTG
CAGGGCCTGAAGTTTAAGGATGGGAGCAAACGGCAGGATCGTGTCAACGC
GCGAGTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig150610:89..998-

>mRNA_H-elongata_contig150610.3375.1 ID=mRNA_H-elongata_contig150610.3375.1|Name=mRNA_H-elongata_contig150610.3375.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig150610:89..998- (Himanthalia elongata Himel1 dioecious)
ACCCAGGACGTGCGCACAAAGAAGGCGCTTCCCGAGGATGCGCAGCGCGA
CCTGGTGGTGGCCTCTATCACCGCCAAGTATACACAGTCAAACTCCGTTG
GCTACGCGACGCGCGGCCAGATGATCGGGGTCGGGGCCGGACAGCAGAGC
CGCGTGGACTGCGTCAAGCTCGCGGCAAGGAAGACCCAGGACGTGCGCAC
AAAGAAGGCGCTTCCCGAGGATGCGCAGCGCGACCTGGTGGTGGCCTCTA
TCACCGCCAAGTATACACAGTCAAACTCCGTTGGCTACGCGACGCGCGGC
CAGATGATCGGGGTCGGGGCCGGACAGCAGAGCCGCGTGGACTGCGTCAA
GCTCGCGGCAAGGAAGGTGTCGGTATGGTGGTTGAGGCACCATCCCAAGG
TGCAGGGCCTGAAGTTTAAGGATGGGAGCAAACGGCAGGATCGTGTCAAC
GCGCGAGTGAGGGTGTCGGTATGGTGGTTGAGGCACCATCCCAAGGTGCA
GGGCCTGAAGTTTAAGGATGGGAGCAAACGGCAGGATCGTGTCAACGCGC
GAGTGAGG
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