prot_H-elongata_contig15058.3373.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15058.3373.1
Unique Nameprot_H-elongata_contig15058.3373.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length191
Homology
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BLAST of mRNA_H-elongata_contig15058.3373.1 vs. uniprot
Match: D7G501_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G501_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 8.650e-40
Identity = 110/223 (49.33%), Postives = 129/223 (57.85%), Query Frame = 0 
Query:    1 VLAAGALSVLSPASRNAAAVGIG-----------AFAARAPASFDDRKGSSTXXXXXXXXXXXXXXXSDGGGREGAMAESGRWSDVEAWIDCSLSALESCTRCVNWSSDAGHVAGVAYVRLFSMALRLLCPVARETNPSGLE--------------------GADGVE-GQALDDKEAGETGEHGERLRWARERLAQVVDDLMWRLREGLPDRDIRLRLLQAS 191
            VLAAG ++ LSPA+  AAAVGIG           A AAR+  S   + GSS          XXXXXX          A+ GRWSD+E W+DCSL+ALE+ TRCVNW+S  G+V G+AYVRL S+ LRLLCP+      SG +                    G  GV+ G ALDD      G    RL WAR+RLA VVDDLMWRLREGLP RDIRLRLLQA+
Sbjct:  481 VLAAGVVAALSPAAEKAAAVGIGNLARSCDSRCRATAARSDTSEGHKNGSSVGNGNANFAAXXXXXXXX---XXXXXAKKGRWSDLETWLDCSLTALEAFTRCVNWNSKTGYVGGLAYVRLLSLVLRLLCPLTAAPADSGDDRDSASTADRVLLGGRSYGGDGKGGVDVGVALDDDSTAGGGRG--RLAWARQRLAHVVDDLMWRLREGLPGRDIRLRLLQAT 698
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15058.3373.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G501_ECTSI8.650e-4049.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15058contigH-elongata_contig15058:4415..4987 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15058.3373.1mRNA_H-elongata_contig15058.3373.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15058 4415..4987 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15058.3373.1 ID=prot_H-elongata_contig15058.3373.1|Name=mRNA_H-elongata_contig15058.3373.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
VLAAGALSVLSPASRNAAAVGIGAFAARAPASFDDRKGSSTTLTTVASAC
APPAVVSDGGGREGAMAESGRWSDVEAWIDCSLSALESCTRCVNWSSDAG
HVAGVAYVRLFSMALRLLCPVARETNPSGLEGADGVEGQALDDKEAGETG
EHGERLRWARERLAQVVDDLMWRLREGLPDRDIRLRLLQAS
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