mRNA_H-elongata_contig15058.3373.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15058.3373.1
Unique NamemRNA_H-elongata_contig15058.3373.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15058.3373.1 vs. uniprot
Match: D7G501_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G501_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 8.650e-40
Identity = 110/223 (49.33%), Postives = 129/223 (57.85%), Query Frame = 1 
Query:    1 VLAAGALSVLSPASRNAAAVGIG-----------AFAARAPASFDDRKGSSTXXXXXXXXXXXXXXXSDGGGREGAMAESGRWSDVEAWIDCSLSALESCTRCVNWSSDAGHVAGVAYVRLFSMALRLLCPVARETNPSGLE--------------------GADGVE-GQALDDKEAGETGEHGERLRWARERLAQVVDDLMWRLREGLPDRDIRLRLLQAS 573
            VLAAG ++ LSPA+  AAAVGIG           A AAR+  S   + GSS          XXXXXX          A+ GRWSD+E W+DCSL+ALE+ TRCVNW+S  G+V G+AYVRL S+ LRLLCP+      SG +                    G  GV+ G ALDD      G    RL WAR+RLA VVDDLMWRLREGLP RDIRLRLLQA+
Sbjct:  481 VLAAGVVAALSPAAEKAAAVGIGNLARSCDSRCRATAARSDTSEGHKNGSSVGNGNANFAAXXXXXXXX---XXXXXAKKGRWSDLETWLDCSLTALEAFTRCVNWNSKTGYVGGLAYVRLLSLVLRLLCPLTAAPADSGDDRDSASTADRVLLGGRSYGGDGKGGVDVGVALDDDSTAGGGRG--RLAWARQRLAHVVDDLMWRLREGLPGRDIRLRLLQAT 698
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15058.3373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G501_ECTSI8.650e-4049.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15058contigH-elongata_contig15058:4415..4987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.3390968-CDS-H-elongata_contig15058:4414..49871622929891.3390968-CDS-H-elongata_contig15058:4414..4987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15058 4415..4987 +
1691679197.2316954-CDS-H-elongata_contig15058:4414..49871691679197.2316954-CDS-H-elongata_contig15058:4414..4987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15058 4415..4987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15058.3373.1prot_H-elongata_contig15058.3373.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15058 4415..4987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15058.3373.1

>prot_H-elongata_contig15058.3373.1 ID=prot_H-elongata_contig15058.3373.1|Name=mRNA_H-elongata_contig15058.3373.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
VLAAGALSVLSPASRNAAAVGIGAFAARAPASFDDRKGSSTTLTTVASAC
APPAVVSDGGGREGAMAESGRWSDVEAWIDCSLSALESCTRCVNWSSDAG
HVAGVAYVRLFSMALRLLCPVARETNPSGLEGADGVEGQALDDKEAGETG
EHGERLRWARERLAQVVDDLMWRLREGLPDRDIRLRLLQAS
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mRNA from alignment at H-elongata_contig15058:4415..4987+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15058.3373.1 ID=mRNA_H-elongata_contig15058.3373.1|Name=mRNA_H-elongata_contig15058.3373.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at H-elongata_contig15058:4415..4987+ (Himanthalia elongata Himel1 dioecious)
GTCCTGGCCGCCGGTGCCCTCTCGGTCCTATCTCCCGCCTCCCGAAATGC
CGCCGCTGTCGGTATCGGCGCCTTCGCGGCACGAGCCCCCGCCTCCTTTG
ATGACCGCAAGGGGTCAAGCACGACCTTGACCACGGTCGCATCCGCATGC
GCGCCGCCGGCGGTGGTTAGCGACGGAGGGGGCCGGGAAGGAGCTATGGC
CGAGAGCGGCCGGTGGTCGGACGTGGAAGCCTGGATAGATTGCTCCCTGT
CGGCGCTGGAGTCGTGTACGCGCTGTGTTAACTGGTCCTCCGACGCCGGG
CACGTCGCGGGCGTCGCTTACGTGCGCCTCTTCTCAATGGCGCTAAGGCT
CTTGTGCCCCGTCGCGCGCGAGACCAACCCTTCGGGATTGGAGGGCGCCG
ACGGGGTGGAAGGGCAAGCATTGGACGATAAGGAGGCGGGGGAAACGGGA
GAGCACGGGGAGAGGTTGAGGTGGGCGCGCGAGAGACTGGCACAAGTGGT
AGACGATTTGATGTGGAGGCTGCGAGAGGGGCTGCCGGACAGGGACATAC
GACTTCGACTGTTACAGGCGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig15058:4415..4987+

>mRNA_H-elongata_contig15058.3373.1 ID=mRNA_H-elongata_contig15058.3373.1|Name=mRNA_H-elongata_contig15058.3373.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig15058:4415..4987+ (Himanthalia elongata Himel1 dioecious)
GTCCTGGCCGCCGGTGCCCTCTCGGTCCTATCTCCCGCCTCCCGAAATGC
CGCCGCTGTCGGTATCGGCGCCTTCGCGGCACGAGCCCCCGCCTCCTTTG
ATGACCGCAAGGGGTCAAGCACGACCTTGACCACGGTCGCATCCGCATGC
GCGCCGCCGGCGGTGGTTAGCGACGGAGGGGGCCGGGAAGGAGCTATGGC
CGAGAGCGGCCGGTGGTCGGACGTGGAAGCCTGGATAGATTGCTCCCTGT
CGGCGCTGGAGTCGTGTACGCGCTGTGTTAACTGGTCCTCCGACGCCGGG
CACGTCGCGGGCGTCGCTTACGTGCGCCTCTTCTCAATGGCGCTAAGGCT
CTTGTGCCCCGTCGCGCGCGAGACCAACCCTTCGGGATTGGAGGGCGCCG
ACGGGGTGGAAGGGCAAGCATTGGACGATAAGGAGGCGGGGGAAACGGGA
GAGCACGGGGAGAGGTTGAGGTGGGCGCGCGAGAGACTGGCACAAGTGGT
AGACGATTTGATGTGGAGGCTGCGAGAGGGGCTGCCGGACAGGGACATAC
GACTTCGACTGTTACAGGCGAGCGTCCTGGCCGCCGGTGCCCTCTCGGTC
CTATCTCCCGCCTCCCGAAATGCCGCCGCTGTCGGTATCGGCGCCTTCGC
GGCACGAGCCCCCGCCTCCTTTGATGACCGCAAGGGGTCAAGCACGACCT
TGACCACGGTCGCATCCGCATGCGCGCCGCCGGCGGTGGTTAGCGACGGA
GGGGGCCGGGAAGGAGCTATGGCCGAGAGCGGCCGGTGGTCGGACGTGGA
AGCCTGGATAGATTGCTCCCTGTCGGCGCTGGAGTCGTGTACGCGCTGTG
TTAACTGGTCCTCCGACGCCGGGCACGTCGCGGGCGTCGCTTACGTGCGC
CTCTTCTCAATGGCGCTAAGGCTCTTGTGCCCCGTCGCGCGCGAGACCAA
CCCTTCGGGATTGGAGGGCGCCGACGGGGTGGAAGGGCAAGCATTGGACG
ATAAGGAGGCGGGGGAAACGGGAGAGCACGGGGAGAGGTTGAGGTGGGCG
CGCGAGAGACTGGCACAAGTGGTAGACGATTTGATGTGGAGGCTGCGAGA
GGGGCTGCCGGACAGGGACATACGACTTCGACTGTTACAGGCGAGC
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