mRNA_H-elongata_contig15058.3372.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15058.3372.1
Unique NamemRNA_H-elongata_contig15058.3372.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15058.3372.1 vs. uniprot
Match: D7G501_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G501_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 9.740e-120
Identity = 241/448 (53.79%), Postives = 287/448 (64.06%), Query Frame = 1 
Query:   91 QRVRDWIHDFLSSLVRLCDDPSNAVAAAAFDAIQSALRKHPLCVTWVDGELQDFWG-EEEPRRERPWMKDDQRAESDS-----GDHKQAFQLQHLGEIVLRSALPRIRRLLRRHSQMLSARGMSAGMAAAATRACTSLLVAALRLSTSPSGKPTHHPLLEDPASADFFGARDAGDAGGISSRRNDGFGKGT--------------PRELVREWVGVRLRAVMEDAEGRDALLVESAAWATLRVLRTVVLTPLKASTAPRVAEAFLRVLRVGHVSTPRRHWPSLHAGEQETAAGAAMALLISSPSATAALAPHVIAAAERVPQPRRRLALLADVFFSLLVRTARGGRAP----RSGSGGXXXXXXXXXXXXXXXXXXXXXXGTVQRRRRGRSGVSSEGDG----GAQLLVSMLEEDWFVQLVSEASPERERRLLFREETVAALATACAQ 1350
            +RVRDWIHDF SSL +LCDDPSN VAAAAF AI++ LR+HPLC T VD E++ FWG E + + E      + R    +     G HKQAF LQH+GEIVLRSALPRIRRLL R S+M+         AA A RAC S++VAALRLSTSPSGKP  +PLL++P S DF G + +    G S   ND   +G+              P++L  EW+  RL  ++E   G DALLVE+AAWATLRVL TV + PL+ S APRVAEAFLRVL  G  +TP+  WPSLHAG QE AAGAA+AL ++SPSATAALAPHV+AAAERVPQPR+RLALLADVFF LLVR  R GRAP     SGSGG                           R+ G  G  S   G    G ++L S+L+E+WF QLVS++     RRLLFREE VA L T CAQ
Sbjct:   58 ERVRDWIHDFFSSLPKLCDDPSNIVAAAAFSAIEALLREHPLCETAVDKEVRGFWGLESDVQPEGKGGVKEGRGSRGTPGGMFGGHKQAFPLQHVGEIVLRSALPRIRRLLHRQSRMVV--DGEPQTAAPAMRACASVMVAALRLSTSPSGKPIENPLLQNPTSVDFLGVKKSALGSGPSG--NDAGAEGSTGKEEEKDLDATLPPKDLAEEWLRARLGGILEGGRGGDALLVETAAWATLRVLHTVAMGPLRVSFAPRVAEAFLRVLVAGKAATPKHLWPSLHAGHQEVAAGAALALRLASPSATAALAPHVLAAAERVPQPRQRLALLADVFFLLLVRPGRNGRAPCVGGGSGSGGGERNDD---------------------RQGGEGGTGSSRTGAPREGPKMLASVLDEEWFEQLVSDSPGRSARRLLFREEAVAVLVTTCAQ 480
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15058.3372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G501_ECTSI9.740e-12053.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15058contigH-elongata_contig15058:373..3929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002380.1
Exons4
Model size1390
Cds size1389
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15058.3372.1prot_H-elongata_contig15058.3372.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15058 373..3929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.2535498-CDS-H-elongata_contig15058:372..4651622929891.2535498-CDS-H-elongata_contig15058:372..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15058 373..465 +
1691679197.1994317-CDS-H-elongata_contig15058:372..4651691679197.1994317-CDS-H-elongata_contig15058:372..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15058 373..465 +
1622929891.2677574-CDS-H-elongata_contig15058:1394..16371622929891.2677574-CDS-H-elongata_contig15058:1394..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15058 1395..1637 +
1691679197.206646-CDS-H-elongata_contig15058:1394..16371691679197.206646-CDS-H-elongata_contig15058:1394..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15058 1395..1637 +
1622929891.2841368-CDS-H-elongata_contig15058:2096..26061622929891.2841368-CDS-H-elongata_contig15058:2096..2606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15058 2097..2606 +
1691679197.2165394-CDS-H-elongata_contig15058:2096..26061691679197.2165394-CDS-H-elongata_contig15058:2096..2606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15058 2097..2606 +
1622929891.2983844-CDS-H-elongata_contig15058:3386..39291622929891.2983844-CDS-H-elongata_contig15058:3386..3929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15058 3387..3929 +
1691679197.223837-CDS-H-elongata_contig15058:3386..39291691679197.223837-CDS-H-elongata_contig15058:3386..3929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15058 3387..3929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15058.3372.1

>prot_H-elongata_contig15058.3372.1 ID=prot_H-elongata_contig15058.3372.1|Name=mRNA_H-elongata_contig15058.3372.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=463bp
AACTRCWCFLDRRAFVNGAFEQGADAQRFNQRVRDWIHDFLSSLVRLCDD
PSNAVAAAAFDAIQSALRKHPLCVTWVDGELQDFWGEEEPRRERPWMKDD
QRAESDSGDHKQAFQLQHLGEIVLRSALPRIRRLLRRHSQMLSARGMSAG
MAAAATRACTSLLVAALRLSTSPSGKPTHHPLLEDPASADFFGARDAGDA
GGISSRRNDGFGKGTPRELVREWVGVRLRAVMEDAEGRDALLVESAAWAT
LRVLRTVVLTPLKASTAPRVAEAFLRVLRVGHVSTPRRHWPSLHAGEQET
AAGAAMALLISSPSATAALAPHVIAAAERVPQPRRRLALLADVFFSLLVR
TARGGRAPRSGSGGTGSGEFGSGSGSGSSGVGGGRGGTVQRRRRGRSGVS
SEGDGGAQLLVSMLEEDWFVQLVSEASPERERRLLFREETVAALATACAQ
ARNYSSIPSFLY*
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mRNA from alignment at H-elongata_contig15058:373..3929+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15058.3372.1 ID=mRNA_H-elongata_contig15058.3372.1|Name=mRNA_H-elongata_contig15058.3372.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3557bp|location=Sequence derived from alignment at H-elongata_contig15058:373..3929+ (Himanthalia elongata Himel1 dioecious)
GCGGCATGCACGAGGTGCTGGTGCTTCCTCGATCGACGCGCGTTCGTCAA
CGGAGCCTTCGAGCAAGGCGCTGACGCGCAGCGCTTCAACCAGGTCTGAT
TATTCACTGTCGGCGTAGGCAAAATAAATTATACCCTCTCCTTACCGTTT
CGTTTGGTCAGGCAAAAATAATTTGTATCATGCCCCTCAAGAGAATTATA
GCTGCGGCGGCCGTTTTTCGCAGCCTTAGGGTGTTCCCTTTCTCCCCTCA
TTTAATTTTGTTCAAGGTAATATACAATAAAACAAATCTAGATGTTGTCT
TCTACTTTATTATAGTATCCTTTCGATACTTTTGCGACCGACTTTTCTAA
CAGACACGTCGTTTGTCTACTTTTGTTGTTGTTTTTCAAGTGCTTGTCGT
GGGGCACGGGGCCAGTCAGTTCATGTAAAATGTGTCTTGTGAGCTGAGAG
GCCTCGGTAAAAGGTTCTTGTCTCTCTCCCAAAATAGCTGAAACGCGTCA
TATTCTACGGGACTGTTAGAATCCTGCTAAACAATGGACTGTTGGAAAAT
CGCTATAGCGGCCCATAGACTCACGAAGAAGTACTCCGCCAGGGGTATTC
ACGAGCGTATCGTAGTTTGTAGTATAGTATAGTGTAATATAGTATAATAT
AGTATAGTATAGTACAGTATAGTATAGTATAGTATAGTATAGTATATTCA
ATACCGCTGAATGTGCAATATTTGGTTATCCAGTGTGTCCAATCAACCTA
TGGCATGTCCGATATGGTGTAGCAAACGTAATAATTATTGACCAAAAGCT
GGTATAATCCTGTGTGTAACGCAACCTGGCCGGCGAAAACCTGGCATATC
ATACCCTATTACACCGCTTCATCCCGGCATTGTTGGGATGATGATGATAA
CCATGATACGTGTTCTATGCGCCCGTGATGATACGCGGTCTGTACGCCGG
TTGGGATACGACATTCGTTTTACCAAAGATACACCGCCCCCCGCTCCCTG
CCCCGTCCCCCACACACCTCAGCGCGTTCGCGACTGGATACACGACTTTT
TATCGAGCCTCGTCAGGCTGTGCGATGATCCAAGCAACGCGGTCGCGGCC
GCTGCTTTTGACGCCATCCAATCGGCATTACGGAAGCACCCTCTTTGCGT
CACCTGGGTAGACGGAGAGCTGCAGGATTTCTGGGGCGAGGAGGAACCCC
GGCGGGAGCGGCCGTGGATGAAGGATGACCAACGCGCGGAGAGTGACTCT
GGGGACCACAAGCAGGTGTGATCTCTAGTATTTGAAGCCGGAAGGCGGAG
GCCGGGCACACTCAAGATTTCAATGTCTTAGTTGTTACGCCGCCATTGAT
CACACGTCCTCTAGAGAGAGGGCAAAGCTTAGGGGGGATTTCGTGTCGGT
AATTGTCGCGTCGAGCGGCGATGATGTTCTTCGGGTGTACAGCAATAGCT
AACCCTCTTAAGCAACGCGGCATCAACTCGCCGCTCACCCCGAGGTTTTT
ACCACGATTTGCGTACTTGGTATGTCTGCTTGCTTGACCTTTTTGGCGTA
TACGGAAAACGCTTCATTCAGCAGGATTTTGACGCGCTCTTTGGGGGGGT
AAGGGGGTAGTTGCCGCGGCTTTTCTTGGTGACTCCCGTCGTGACTTGAA
CCTGAACGCGTACCCCCCCCCCTCGCCGTCCCCATGTCCCCATGTCCCCG
TTTCCTGATTTCAATCATCAACAGGCGTTTCAGCTACAGCACCTCGGTGA
GATCGTCCTCCGCTCAGCTTTGCCCCGCATCCGGAGACTATTGCGCCGAC
ATTCACAGATGTTGTCGGCGCGCGGGATGTCGGCGGGAATGGCGGCGGCT
GCAACTCGAGCGTGTACCTCGCTCCTCGTAGCCGCGTTGCGTCTCTCCAC
CAGCCCGTCCGGAAAGCCCACGCACCACCCCCTGCTAGAAGACCCTGCGT
CGGCGGATTTTTTCGGGGCGAGGGATGCTGGAGACGCCGGAGGTATCAGC
TCCCGTAGGAACGATGGGTTTGGGAAGGGGACGCCCAGGGAACTCGTGAG
AGAGTGGGTGGGGGTGCGGCTCAGAGCCGTCATGGAGGATGCGGAGGGCC
GAGACGCTTTGCTGGTGGAGTCCGCCGCGTGGGCCACGTTGCGAGTTCTG
CGGACGGTTGTGCTGACTCCGCTGAAGGCGTCGACAGCGCCGAGGGTAGC
GGAGGCGTTTTTGAGGGTGCTGCGGGTAGGGCATGTAAATATTATTAGGA
GTGAAAAAAAAAATTAGGTCACTTTTTATATAGTTTTAGGCTACTGTTAC
TCCTTCCGCTGGACTTCACGGAGTAGGTTAAGACGCTTTGTCGAGATTCA
TGGTACCCGTGCCGTACTGCTCTGCTGCCTGGAGACACAGCGCGTAGTAA
ACCTGTCTATTGGGCGGTCCGTCTCTCGCGCGTAGTCCATGTATTTAAAA
AGTTTGCACAACCTGCACATTAAAGTCCCTCCCAGTAACCGGTGAAAACT
TTTTTTTAATAAGATAATAACGGGTGCTTGGAAAAATCCTGGTGGAAAAT
TGATTATATCAGAAAAGCCGATGCCTCTTTTTTAACAGTATAAGAAGCAG
TCTTATTATTGAAAATAAAACACTTAAAAAAGTACCGGCATAGTAATACT
AATATTGGTAGGCGAAGAAGAAAAAGAGGGAACTTTCTTGGGTGCGGTGT
CACGATAACTCGTCCACGGTCAAAAGCGGGTCGAATTTCATCTGCGTGGT
CGCCTTGCGGTGTTCAAGCACCGTACAAGCTCGGGTTCCGATGTCTTCGA
GAGCTCGCTGGGGATTGATGAAAATCCGTTTAAAGTTATCCGTCACGCCC
ACATGACGGACTGCCCCTGAAGAAACACCATATGCTATCGTATAGTCGAG
GTTCTCGGTTCAAATTATTATCTTTAACGGCAGCGTCGATGTATGTTCTG
AAACTCTGGCTTTCCGCGCCTTTCCCTGCTCTCTTGCGCTCAACATCCCA
TCTAAAAAAATAAGGTTTCCACGCCGAGACGCCACTGGCCGTCCCTCCAC
GCCGGAGAGCAGGAGACAGCCGCCGGCGCCGCCATGGCCCTATTGATATC
CTCGCCCTCGGCAACCGCAGCGCTCGCCCCCCACGTCATCGCCGCGGCTG
AGCGGGTGCCGCAGCCGCGGCGACGGCTGGCCCTGCTTGCGGACGTGTTT
TTCTCCCTGCTTGTGCGGACGGCGAGGGGGGGACGTGCACCACGTAGCGG
AAGCGGTGGCACAGGCAGTGGAGAGTTTGGCAGCGGCAGTGGAAGCGGCA
GCAGCGGCGTTGGCGGTGGAAGGGGTGGAACTGTCCAGCGCCGGCGGCGT
GGAAGGAGTGGCGTGAGCTCGGAGGGCGACGGCGGCGCGCAGCTTCTGGT
ATCGATGCTCGAGGAGGACTGGTTCGTGCAGCTAGTGTCGGAAGCTTCCC
CTGAGAGAGAGAGGCGGTTACTGTTCAGGGAGGAGACGGTCGCAGCTCTC
GCGACGGCGTGCGCGCAGGCGAGAAATTATTCTAGTATACCTTCGTTTTT
ATACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig15058:373..3929+

>mRNA_H-elongata_contig15058.3372.1 ID=mRNA_H-elongata_contig15058.3372.1|Name=mRNA_H-elongata_contig15058.3372.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2778bp|location=Sequence derived from alignment at H-elongata_contig15058:373..3929+ (Himanthalia elongata Himel1 dioecious)
GCGGCATGCACGAGGTGCTGGTGCTTCCTCGATCGACGCGCGTTCGTCAA
CGGAGCCTTCGAGCAAGGCGCTGACGCGCAGCGCTTCAACCAGGCGGCAT
GCACGAGGTGCTGGTGCTTCCTCGATCGACGCGCGTTCGTCAACGGAGCC
TTCGAGCAAGGCGCTGACGCGCAGCGCTTCAACCAGCGCGTTCGCGACTG
GATACACGACTTTTTATCGAGCCTCGTCAGGCTGTGCGATGATCCAAGCA
ACGCGGTCGCGGCCGCTGCTTTTGACGCCATCCAATCGGCATTACGGAAG
CACCCTCTTTGCGTCACCTGGGTAGACGGAGAGCTGCAGGATTTCTGGGG
CGAGGAGGAACCCCGGCGGGAGCGGCCGTGGATGAAGGATGACCAACGCG
CGGAGAGTGACTCTGGGGACCACAAGCAGCGCGTTCGCGACTGGATACAC
GACTTTTTATCGAGCCTCGTCAGGCTGTGCGATGATCCAAGCAACGCGGT
CGCGGCCGCTGCTTTTGACGCCATCCAATCGGCATTACGGAAGCACCCTC
TTTGCGTCACCTGGGTAGACGGAGAGCTGCAGGATTTCTGGGGCGAGGAG
GAACCCCGGCGGGAGCGGCCGTGGATGAAGGATGACCAACGCGCGGAGAG
TGACTCTGGGGACCACAAGCAGGCGTTTCAGCTACAGCACCTCGGTGAGA
TCGTCCTCCGCTCAGCTTTGCCCCGCATCCGGAGACTATTGCGCCGACAT
TCACAGATGTTGTCGGCGCGCGGGATGTCGGCGGGAATGGCGGCGGCTGC
AACTCGAGCGTGTACCTCGCTCCTCGTAGCCGCGTTGCGTCTCTCCACCA
GCCCGTCCGGAAAGCCCACGCACCACCCCCTGCTAGAAGACCCTGCGTCG
GCGGATTTTTTCGGGGCGAGGGATGCTGGAGACGCCGGAGGTATCAGCTC
CCGTAGGAACGATGGGTTTGGGAAGGGGACGCCCAGGGAACTCGTGAGAG
AGTGGGTGGGGGTGCGGCTCAGAGCCGTCATGGAGGATGCGGAGGGCCGA
GACGCTTTGCTGGTGGAGTCCGCCGCGTGGGCCACGTTGCGAGTTCTGCG
GACGGTTGTGCTGACTCCGCTGAAGGCGTCGACAGCGCCGAGGGTAGCGG
AGGCGTTTTTGAGGGTGCTGCGGGTAGGGCATGCGTTTCAGCTACAGCAC
CTCGGTGAGATCGTCCTCCGCTCAGCTTTGCCCCGCATCCGGAGACTATT
GCGCCGACATTCACAGATGTTGTCGGCGCGCGGGATGTCGGCGGGAATGG
CGGCGGCTGCAACTCGAGCGTGTACCTCGCTCCTCGTAGCCGCGTTGCGT
CTCTCCACCAGCCCGTCCGGAAAGCCCACGCACCACCCCCTGCTAGAAGA
CCCTGCGTCGGCGGATTTTTTCGGGGCGAGGGATGCTGGAGACGCCGGAG
GTATCAGCTCCCGTAGGAACGATGGGTTTGGGAAGGGGACGCCCAGGGAA
CTCGTGAGAGAGTGGGTGGGGGTGCGGCTCAGAGCCGTCATGGAGGATGC
GGAGGGCCGAGACGCTTTGCTGGTGGAGTCCGCCGCGTGGGCCACGTTGC
GAGTTCTGCGGACGGTTGTGCTGACTCCGCTGAAGGCGTCGACAGCGCCG
AGGGTAGCGGAGGCGTTTTTGAGGGTGCTGCGGGTAGGGCATGTTTCCAC
GCCGAGACGCCACTGGCCGTCCCTCCACGCCGGAGAGCAGGAGACAGCCG
CCGGCGCCGCCATGGCCCTATTGATATCCTCGCCCTCGGCAACCGCAGCG
CTCGCCCCCCACGTCATCGCCGCGGCTGAGCGGGTGCCGCAGCCGCGGCG
ACGGCTGGCCCTGCTTGCGGACGTGTTTTTCTCCCTGCTTGTGCGGACGG
CGAGGGGGGGACGTGCACCACGTAGCGGAAGCGGTGGCACAGGCAGTGGA
GAGTTTGGCAGCGGCAGTGGAAGCGGCAGCAGCGGCGTTGGCGGTGGAAG
GGGTGGAACTGTCCAGCGCCGGCGGCGTGGAAGGAGTGGCGTGAGCTCGG
AGGGCGACGGCGGCGCGCAGCTTCTGGTATCGATGCTCGAGGAGGACTGG
TTCGTGCAGCTAGTGTCGGAAGCTTCCCCTGAGAGAGAGAGGCGGTTACT
GTTCAGGGAGGAGACGGTCGCAGCTCTCGCGACGGCGTGCGCGCAGGCGA
GAAATTATTCTAGTATACCTTCGTTTTTATACTGAGTTTCCACGCCGAGA
CGCCACTGGCCGTCCCTCCACGCCGGAGAGCAGGAGACAGCCGCCGGCGC
CGCCATGGCCCTATTGATATCCTCGCCCTCGGCAACCGCAGCGCTCGCCC
CCCACGTCATCGCCGCGGCTGAGCGGGTGCCGCAGCCGCGGCGACGGCTG
GCCCTGCTTGCGGACGTGTTTTTCTCCCTGCTTGTGCGGACGGCGAGGGG
GGGACGTGCACCACGTAGCGGAAGCGGTGGCACAGGCAGTGGAGAGTTTG
GCAGCGGCAGTGGAAGCGGCAGCAGCGGCGTTGGCGGTGGAAGGGGTGGA
ACTGTCCAGCGCCGGCGGCGTGGAAGGAGTGGCGTGAGCTCGGAGGGCGA
CGGCGGCGCGCAGCTTCTGGTATCGATGCTCGAGGAGGACTGGTTCGTGC
AGCTAGTGTCGGAAGCTTCCCCTGAGAGAGAGAGGCGGTTACTGTTCAGG
GAGGAGACGGTCGCAGCTCTCGCGACGGCGTGCGCGCAGGCGAGAAATTA
TTCTAGTATACCTTCGTTTTTATACTGA
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