mRNA_H-elongata_contig150555.3371.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150555.3371.1
Unique NamemRNA_H-elongata_contig150555.3371.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Match: B7GCP7_PHATC (CTP synthase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GCP7_PHATC)

HSP 1 Score: 90.1 bits (222), Expect = 2.410e-19
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 MGATMRLGQNKAIFRH-LANGEGSVSARMYGGVDEVLERHRHRYEFNLEKIGAIESGGLKFIGRDNSVLRMDMAEIPR 231
            MG TMRLG     F H LA+G  SVS R+YGG + V ERHRHRYE N EK+ A+  GGL+F+GRD +  RM++AE+P+
Sbjct:  425 MGGTMRLGARTTKFTHTLADGSMSVSQRLYGGKEMVSERHRHRYEVNPEKVDAVHDGGLRFVGRDETGERMEIAELPQ 502          
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Match: B5YN22_THAPS (CTP synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YN22_THAPS)

HSP 1 Score: 86.3 bits (212), Expect = 5.550e-18
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    1 MGATMRLGQNKAIFRHLANGEGS--VSARMYGGVDEVLERHRHRYEFNLEKIGAIESGGLKFIGRDNSVLRMDMAEIPR 231
            MG TMRLG     F H  + +GS  +S  MYGG D V ERHRHRYE N E++  I   GLKF+GRD +  RM++AE+PR
Sbjct:  435 MGGTMRLGSRNTKFTHPTHDDGSPSISKIMYGGSDTVSERHRHRYEVNPERVDTIHEAGLKFVGRDETGTRMEIAELPR 513          
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Match: A0A7S0AZG8_9STRA (CTP synthase (glutamine hydrolyzing) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZG8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.730e-17
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 MGATMRLGQNKAIFRHL-ANGEGSVSARMYGGVDEVLERHRHRYEFNLEKIGAIESGGLKFIGRDNSVLRMDMAEIPR 231
            MG TMRLG     F H   +G  S +  +Y G D V ERHRHRYE N +++  I S GLKF+GRD +  RM++AE+PR
Sbjct:    1 MGGTMRLGARDTKFTHQHEDGSMSTAQILYNGADTVSERHRHRYEVNPDRVDEIHSAGLKFVGRDTTGTRMEVAELPR 78          
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Match: K0SW18_THAOC (CTP synthase (glutamine hydrolyzing) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SW18_THAOC)

HSP 1 Score: 78.2 bits (191), Expect = 1.830e-16
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    1 MGATMRLGQNKAIFRHLANGEGSVSAR--MYGGVDEVLERHRHRYEFNLEKIGAIESGGLKFIGRDNSVLRMDMAEIPR 231
            MG TMRLG     F H  + +GS S    MY     V ERHRHRYE N +++ AI   GLKF+GRD +  RM++AE+PR
Sbjct:   40 MGGTMRLGSRNTAFTHPEHEDGSTSIAQVMYKNARVVSERHRHRYEVNPDRVDAIHEAGLKFVGRDETGTRMEVAELPR 118          
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Match: A0A7S3PV28_9STRA (CTP synthase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV28_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.360e-16
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 MGATMRLGQNKAIFRHLANGEGSVSAR--MYGGVDEVLERHRHRYEFNLEKIGAIESGGLKFIGRDNSVLRMDMAEIPR 231
            MG  MRLG     F H  + +GS+S    +YGG+D V ERHRHRYE N EK+  I + GLKF+GRD S  RM++AE+PR
Sbjct:  457 MGGNMRLGARNTKFTH-KHDDGSMSTAQILYGGLDVVSERHRHRYEVNPEKVDEIHNAGLKFVGRDESGERMEVAELPR 534          
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Match: A0A6U3T142_9STRA (CTP synthase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3T142_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.060e-16
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 MGATMRLGQNKAIFRHLANGEGSVSAR--MYGGVDEVLERHRHRYEFNLEKIGAIESGGLKFIGRDNSVLRMDMAEIPR 231
            MG TMRLG     F H  + +GS+S    MY     V ERHRHRYE N E++ AI   GLKF+GRD +  RM++AE+PR
Sbjct:  356 MGGTMRLGSRNTAFTHSKHDDGSLSIAQIMYKNASVVSERHRHRYEVNPERVDAIHDAGLKFVGRDETGTRMEIAELPR 434          
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Match: F4NW48_BATDJ (CTP synthase n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NW48_BATDJ)

HSP 1 Score: 80.9 bits (198), Expect = 4.420e-16
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 MGATMRLGQNKAIFRHLANGEGSVSARMYGGVDEVLERHRHRYEFNLEKIGAIESGGLKFIGRDNSVLRMDMAEIP 228
            MG TMRLG    +F   A  + S+  RMYGGVD V ERHRHRYE N E I  +E GGL+F+GRD    RM + E+P
Sbjct:  446 MGGTMRLGSRATLFA--ATTKNSIVRRMYGGVDMVHERHRHRYEVNPEYIARLEEGGLRFVGRDEKGERMIITELP 519          
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Match: A0A6A5ULL8_9PLEO (CTP synthase n=1 Tax=Byssothecium circinans TaxID=147558 RepID=A0A6A5ULL8_9PLEO)

HSP 1 Score: 80.1 bits (196), Expect = 8.240e-16
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 MGATMRLGQNKAIFRHLANGEGSVSARMYGGVDEVLERHRHRYEFNLEKIGAIESGGLKFIGRDNSVLRMDMAEI 225
            MGATMRLG +  +F+  +N E S   ++Y G +E+LERHRHRYE N E +G +E GGL FIG+D+  +RM++ EI
Sbjct:  449 MGATMRLGLHPTLFQ--SNSEWSRLRKLYHGKEEILERHRHRYEVNPEYVGKLEKGGLSFIGKDDLGVRMEVIEI 521          
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Match: A0A061BBR7_CYBFA (CTP synthase n=1 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A061BBR7_CYBFA)

HSP 1 Score: 79.3 bits (194), Expect = 1.530e-15
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 MGATMRLGQNKAIFRHLANGEGSVSARMYGGVDEVLERHRHRYEFNLEKIGAIESGGLKFIGRDNSVLRMDMAEI 225
            +G TMRLG   ++F+     E S+  R+YGG +EVLERHRHRYE N + I +IES GLKF+G+D++  RM+M E+
Sbjct:  451 LGGTMRLGLRASVFQV----EDSILRRLYGGGEEVLERHRHRYEINPKMISSIESKGLKFVGKDDTGERMEMFEL 521          
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Match: A0A7S2W397_9STRA (CTP synthase (glutamine hydrolyzing) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W397_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.740e-15
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 MGATMRLGQN--KAIFRHLANGEGSVSARMYGGVDEVLERHRHRYEFNLEKIGAIESGGLKFIGRDNSVLRMDMAEIPR 231
            MG TMRLG    K I RH+ +G  S    +YGG + V ERHRHRYE N E++  +E  GLKF+GRD +  RM++AE+PR
Sbjct:  103 MGGTMRLGARITKFISRHV-DGTMSTLQILYGGSETVSERHRHRYEVNPERVDDVERAGLKFLGRDETGERMEVAELPR 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150555.3371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7GCP7_PHATC2.410e-1956.41CTP synthase n=1 Tax=Phaeodactylum tricornutum (st... [more]
B5YN22_THAPS5.550e-1853.16CTP synthase n=1 Tax=Thalassiosira pseudonana TaxI... [more]
A0A7S0AZG8_9STRA2.730e-1750.00CTP synthase (glutamine hydrolyzing) n=1 Tax=Minut... [more]
K0SW18_THAOC1.830e-1649.37CTP synthase (glutamine hydrolyzing) n=1 Tax=Thala... [more]
A0A7S3PV28_9STRA2.360e-1653.16CTP synthase n=1 Tax=Chaetoceros debilis TaxID=122... [more]
A0A6U3T142_9STRA3.060e-1650.63CTP synthase n=1 Tax=Skeletonema marinoi TaxID=267... [more]
F4NW48_BATDJ4.420e-1653.95CTP synthase n=2 Tax=Batrachochytrium dendrobatidi... [more]
A0A6A5ULL8_9PLEO8.240e-1652.00CTP synthase n=1 Tax=Byssothecium circinans TaxID=... [more]
A0A061BBR7_CYBFA1.530e-1552.00CTP synthase n=1 Tax=Cyberlindnera fabianii TaxID=... [more]
A0A7S2W397_9STRA1.740e-1551.90CTP synthase (glutamine hydrolyzing) n=1 Tax=Eucam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150555contigH-elongata_contig150555:403..1035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue8.2e-16
Seed eggNOG ortholog2850.Phatr50034
Preferred nameCTPS2
KEGG rclassRC00010,RC00074
KEGG koko:K01937
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00052
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001775,GO:0002164,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006629,GO:0006644,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0008610,GO:0008654,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009791,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0030097,GO:0032501,GO:0032502,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0035166,GO:0035167,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0048513,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097268,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen
EggNOG OGs2XEU0@2836,COG0504@1,KOG2387@2759
EC6.3.4.2
COG Functional cat.F
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.1889853-CDS-H-elongata_contig150555:402..5081622929891.1889853-CDS-H-elongata_contig150555:402..508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150555 403..508 -
1691679197.1821706-CDS-H-elongata_contig150555:402..5081691679197.1821706-CDS-H-elongata_contig150555:402..508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150555 403..508 -
1622929891.206026-CDS-H-elongata_contig150555:910..10351622929891.206026-CDS-H-elongata_contig150555:910..1035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150555 911..1035 -
1691679197.1921065-CDS-H-elongata_contig150555:910..10351691679197.1921065-CDS-H-elongata_contig150555:910..1035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150555 911..1035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150555.3371.1prot_H-elongata_contig150555.3371.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150555 403..1035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150555.3371.1

>prot_H-elongata_contig150555.3371.1 ID=prot_H-elongata_contig150555.3371.1|Name=mRNA_H-elongata_contig150555.3371.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MGATMRLGQNKAIFRHLANGEGSVSARMYGGVDEVLERHRHRYEFNLEKI
GAIESGGLKFIGRDNSVLRMDMAEIPR
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mRNA from alignment at H-elongata_contig150555:403..1035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150555.3371.1 ID=mRNA_H-elongata_contig150555.3371.1|Name=mRNA_H-elongata_contig150555.3371.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=633bp|location=Sequence derived from alignment at H-elongata_contig150555:403..1035- (Himanthalia elongata Himel1 dioecious)
ATGGGGGCTACCATGCGGCTGGGCCAGAATAAAGCTATCTTCCGACACCT TGCCAATGGCGAGGGATCAGTATCGGCGCGGATGTACGGCGGCGTCGACG AGGTTTTAGAGCGCCACCGGCATCGGTAAGAAAATCTCTGCCTTGCTGGA TGCTGCGAAAGGCCGTGGAGAGAGCTATATTTCTCAGAGCTTGTCGTTCT TTCTCCTGCAAAAAACTCTCGCTCTTCTACAGTCGACAGGCATAAGAGAA AACACAATCGTAAGAATATCATATTACGGAAAGAGTGTAAACTTTAAAAG ATTTTCCGTCGTATTCGTCCGGTACCCACGAATAGGTAGGAAACCGCATT TTGTTTAGCTAAGTTACTCTGCTATGGTGTAACGCGCTGTACTGAACTAT TACAAAGTCTTGTGTCGACCATGCTTTTTTCTTCCCATAATACCTTGCAT ACTTTCAATACCACACTTCATTATATAAATGGTTACAGTTTTACCTCTCA CATTAAAAAACAAATCTCGGCGTGAAGCTATGAGTTCAACCTGGAGAAGA TTGGCGCGATCGAGTCCGGGGGATTAAAGTTCATCGGAAGGGACAATAGC GTTTTAAGGATGGATATGGCTGAGATACCACGT
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Coding sequence (CDS) from alignment at H-elongata_contig150555:403..1035-

>mRNA_H-elongata_contig150555.3371.1 ID=mRNA_H-elongata_contig150555.3371.1|Name=mRNA_H-elongata_contig150555.3371.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig150555:403..1035- (Himanthalia elongata Himel1 dioecious)
ATGGGGGCTACCATGCGGCTGGGCCAGAATAAAGCTATCTTCCGACACCT
TGCCAATGGCGAGGGATCAGTATCGGCGCGGATGTACGGCGGCGTCGACG
AGGTTTTAGAGCGCCACCGGCATCGATGGGGGCTACCATGCGGCTGGGCC
AGAATAAAGCTATCTTCCGACACCTTGCCAATGGCGAGGGATCAGTATCG
GCGCGGATGTACGGCGGCGTCGACGAGGTTTTAGAGCGCCACCGGCATCG
CTATGAGTTCAACCTGGAGAAGATTGGCGCGATCGAGTCCGGGGGATTAA
AGTTCATCGGAAGGGACAATAGCGTTTTAAGGATGGATATGGCTGAGATA
CCACGTCTATGAGTTCAACCTGGAGAAGATTGGCGCGATCGAGTCCGGGG
GATTAAAGTTCATCGGAAGGGACAATAGCGTTTTAAGGATGGATATGGCT
GAGATACCACGT
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