mRNA_H-elongata_contig150554.3370.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150554.3370.1
Unique NamemRNA_H-elongata_contig150554.3370.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150554.3370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150554contigH-elongata_contig150554:2..632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size631
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150554.3370.1prot_H-elongata_contig150554.3370.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150554 240..605 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.1011782-UTR-H-elongata_contig150554:1..2391622929891.1011782-UTR-H-elongata_contig150554:1..239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150554 2..239 +
1691679197.1539383-UTR-H-elongata_contig150554:1..2391691679197.1539383-UTR-H-elongata_contig150554:1..239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150554 2..239 +
1622929891.137059-UTR-H-elongata_contig150554:605..6321622929891.137059-UTR-H-elongata_contig150554:605..632Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150554 606..632 +
1691679197.173742-UTR-H-elongata_contig150554:605..6321691679197.173742-UTR-H-elongata_contig150554:605..632Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150554 606..632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.1178799-CDS-H-elongata_contig150554:239..6051622929891.1178799-CDS-H-elongata_contig150554:239..605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150554 240..605 +
1691679197.1629877-CDS-H-elongata_contig150554:239..6051691679197.1629877-CDS-H-elongata_contig150554:239..605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150554 240..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150554.3370.1

>prot_H-elongata_contig150554.3370.1 ID=prot_H-elongata_contig150554.3370.1|Name=mRNA_H-elongata_contig150554.3370.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MTNSAGLKKEDLGIDYKFSKNQAHSVHDWPLQYLKKNRRGGRIFPIPGVN
VSSCLRPPPPSLPPLRHQYFVLNTAVSMRPILSRSARRLLHGKEPCFRGV
ALLNWNANALTLPPPTRQPFP*
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mRNA from alignment at H-elongata_contig150554:2..632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150554.3370.1 ID=mRNA_H-elongata_contig150554.3370.1|Name=mRNA_H-elongata_contig150554.3370.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=631bp|location=Sequence derived from alignment at H-elongata_contig150554:2..632+ (Himanthalia elongata Himel1 dioecious)
TAAAGAACTGCATGTGGCTATCCGGACGCGGGCCTATCGTAGAACGATTG
AGCGAAGAGCGACGGGTTCAATGGATGCAACGAAAAAAAAGAAAAACAAG
ACAAAGAAAAAAACGAAACAAACGAAACGCCAGAAACAGGCAACATGACA
TCGGCAAGCGAAAAAACCTGCCCGGTATTAGTATGTGATTTACTCCGTAC
TATATAGTGAATAAAATCAAAAGTACTCACACGCAACAATGACAAACTCC
GCGGGACTAAAAAAAGAGGACCTCGGCATTGATTACAAGTTTTCAAAAAA
CCAAGCACATAGCGTACATGATTGGCCTTTACAGTATTTAAAAAAAAATA
GGAGGGGGGGGAGGATATTTCCCATCCCCGGCGTGAATGTGTCATCGTGT
CTGCGACCACCACCACCATCGCTGCCACCCCTACGACATCAGTATTTCGT
GCTAAACACAGCGGTAAGCATGCGTCCGATACTTTCTAGATCAGCACGCC
GTTTACTCCATGGAAAAGAACCATGTTTCCGCGGGGTCGCTCTTCTCAAC
TGGAACGCGAACGCTCTAACCCTCCCCCCCCCAACCCGACAACCCTTCCC
CTAATGGCGGTACCTCCTCGACGGCGCTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig150554:2..632+

>mRNA_H-elongata_contig150554.3370.1 ID=mRNA_H-elongata_contig150554.3370.1|Name=mRNA_H-elongata_contig150554.3370.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig150554:2..632+ (Himanthalia elongata Himel1 dioecious)
ATGACAAACTCCGCGGGACTAAAAAAAGAGGACCTCGGCATTGATTACAA
GTTTTCAAAAAACCAAGCACATAGCGTACATGATTGGCCTTTACAGTATT
TAAAAAAAAATAGGAGGGGGGGGAGGATATTTCCCATCCCCGGCGTGAAT
GTGTCATCGTGTCTGCGACCACCACCACCATCGCTGCCACCCCTACGACA
TCAGTATTTCGTGCTAAACACAGCGGTAAGCATGCGTCCGATACTTTCTA
GATCAGCACGCCGTTTACTCCATGGAAAAGAACCATGTTTCCGCGGGGTC
GCTCTTCTCAACTGGAACGCGAACGCTCTAACCCTCCCCCCCCCAACCCG
ACAACCCTTCCCCTAAATGACAAACTCCGCGGGACTAAAAAAAGAGGACC
TCGGCATTGATTACAAGTTTTCAAAAAACCAAGCACATAGCGTACATGAT
TGGCCTTTACAGTATTTAAAAAAAAATAGGAGGGGGGGGAGGATATTTCC
CATCCCCGGCGTGAATGTGTCATCGTGTCTGCGACCACCACCACCATCGC
TGCCACCCCTACGACATCAGTATTTCGTGCTAAACACAGCGGTAAGCATG
CGTCCGATACTTTCTAGATCAGCACGCCGTTTACTCCATGGAAAAGAACC
ATGTTTCCGCGGGGTCGCTCTTCTCAACTGGAACGCGAACGCTCTAACCC
TCCCCCCCCCAACCCGACAACCCTTCCCCTAA
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