mRNA_H-elongata_contig150527.3369.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150527.3369.1
Unique NamemRNA_H-elongata_contig150527.3369.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: D8LIZ6_ECTSI (Chp-1 / RAR1 homologue n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIZ6_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.000e-33
Identity = 53/66 (80.30%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   19 AEKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVTV 216
            A K  G LRCRNFGCNQ +DE  NSDTACRFHT PPIFHDTRKGW CCKKRVYDWDEFEQ+QG  V
Sbjct:  130 APKRAGALRCRNFGCNQYYDEADNSDTACRFHTGPPIFHDTRKGWSCCKKRVYDWDEFEQLQGCQV 195          
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: W7U2Z9_9STRA (Chord family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2Z9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.760e-28
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   16 AAEKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVT 213
            ++E + G LRC+N+GCNQ F E  NS+ ACRFH APP+FHDT+KGW CC KRVYDWDEF  I+G T
Sbjct:  109 SSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCAKRVYDWDEFHTIEGCT 174          
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A6V2Q7H8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2Q7H8_HETAK)

HSP 1 Score: 105 bits (262), Expect = 9.540e-26
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   19 AEKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVT 213
            A+ N G LRCRN+GCNQ + E +N   AC  HTAPPIFHD RKGW CC KRVYDWDEF+QI G  
Sbjct:  106 AQTNEGKLRCRNYGCNQWYLEAENGPEACGHHTAPPIFHDARKGWSCCAKRVYDWDEFQQIAGCA 170          
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A196SL25_BLAHN (CHORD family protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SL25_BLAHN)

HSP 1 Score: 102 bits (253), Expect = 1.750e-24
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 RRDLPAAEKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVTV 216
            +R +   E + G +RC N+GC + +   +N  TACR+HTAPP+FHD  KGW CC+KRVYDWDEF +I+G TV
Sbjct:   91 KRPVVVKEDHTGMVRCTNYGCYKWYKPEENGPTACRYHTAPPVFHDASKGWSCCQKRVYDWDEFHKIEGCTV 162          
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: UPI000711E3EE (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E3EE)

HSP 1 Score: 99.0 bits (245), Expect = 1.830e-23
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   22 EKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVTV 216
            E + G +RC N+GC Q +   +N+ TAC +HTAPP+FHD  KGW CC+KRVYDWDEF +I G TV
Sbjct:   95 EDHTGMVRCTNYGCYQWYRPEENNPTACHYHTAPPVFHDNSKGWSCCQKRVYDWDEFNKIPGCTV 159          
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: D8LYK2_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LYK2_BLAHO)

HSP 1 Score: 97.1 bits (240), Expect = 2.920e-23
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query:   40 LRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVTV 216
            +RC N+GC + +   +NSDTAC +HT+PP+FHD  KGW CC+KRVYDWDEF +I+G T+
Sbjct:    2 VRCTNYGCYKWYKPEENSDTACHYHTSPPVFHDASKGWSCCQKRVYDWDEFYKIEGCTI 60          
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A836CMP5_9STRA (Chp-1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP5_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.690e-22
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   16 AAEKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVT 213
            AA   +G LRCRN+GC   + E  N   AC  HTAPP+FHDT+KGW CC KRVYDWDEF+ I G  
Sbjct:  115 AAADTDGLLRCRNYGCGARYAEADNHARACAHHTAPPVFHDTKKGWSCCAKRVYDWDEFQAIAGCA 180          
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A1V9YKW6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKW6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.330e-19
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   40 LRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCK-KRVYDWDEFEQIQGVTV 216
            ++C+NFGC + F + +N + ACR+H APP FHDT+KGW CC  K VYDWD+FE+I+  TV
Sbjct:  141 VQCKNFGCREKFVDSENHELACRYHKAPPTFHDTKKGWSCCSSKMVYDWDDFEKIEPCTV 200          
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A7S2HP00_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HP00_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.350e-19
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   46 CRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRV-YDWDEFEQIQGVTV 216
            C+N+GC Q F E +N DTACR HTAPP FH+ RKGW CCK +V  DW+EF+QI G  V
Sbjct:   31 CKNYGCAQRFKEEENHDTACRHHTAPPFFHECRKGWTCCKSKVAMDWEEFQQIPGCAV 88          
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A7S3FTL0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3FTL0_9SPIT)

HSP 1 Score: 83.2 bits (204), Expect = 4.510e-19
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1
Query:   43 RCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVTV 216
            RC+  GC ++F E  N  T+C+FH+  PIFHD +KGW CC K  YDWDEF++I+G  +
Sbjct:   12 RCKRPGCGKMFSEAANDGTSCKFHSGKPIFHDIKKGWECCGKVCYDWDEFQKIEGCCI 69          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIZ6_ECTSI1.000e-3380.30Chp-1 / RAR1 homologue n=2 Tax=Ectocarpus TaxID=28... [more]
W7U2Z9_9STRA9.760e-2865.15Chord family protein n=2 Tax=Monodopsidaceae TaxID... [more]
A0A6V2Q7H8_HETAK9.540e-2666.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A196SL25_BLAHN1.750e-2454.17CHORD family protein n=1 Tax=Blastocystis sp. subt... [more]
UPI000711E3EE1.830e-2358.46hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
D8LYK2_BLAHO2.920e-2359.32Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
A0A836CMP5_9STRA1.690e-2259.09Chp-1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A... [more]
A0A1V9YKW6_9STRA1.330e-1956.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2HP00_9STRA1.350e-1962.07Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S3FTL0_9SPIT4.510e-1951.72Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150527contigH-elongata_contig150527:168..832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size216
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150527.3369.1prot_H-elongata_contig150527.3369.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150527 173..801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929890.9876468-UTR-H-elongata_contig150527:167..1721622929890.9876468-UTR-H-elongata_contig150527:167..172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150527 168..172 -
1691679197.1170623-UTR-H-elongata_contig150527:167..1721691679197.1170623-UTR-H-elongata_contig150527:167..172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150527 168..172 -
1622929891.0369105-UTR-H-elongata_contig150527:801..8321622929891.0369105-UTR-H-elongata_contig150527:801..832Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150527 802..832 -
1691679197.1451492-UTR-H-elongata_contig150527:801..8321691679197.1451492-UTR-H-elongata_contig150527:801..832Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150527 802..832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.011318-CDS-H-elongata_contig150527:172..2911622929891.011318-CDS-H-elongata_contig150527:172..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150527 173..291 -
1691679197.1278844-CDS-H-elongata_contig150527:172..2911691679197.1278844-CDS-H-elongata_contig150527:172..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150527 173..291 -
1622929891.0254436-CDS-H-elongata_contig150527:740..8011622929891.0254436-CDS-H-elongata_contig150527:740..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150527 741..801 -
1691679197.1374567-CDS-H-elongata_contig150527:740..8011691679197.1374567-CDS-H-elongata_contig150527:740..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150527 741..801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150527.3369.1

>prot_H-elongata_contig150527.3369.1 ID=prot_H-elongata_contig150527.3369.1|Name=mRNA_H-elongata_contig150527.3369.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MDILGAGTSGATNSSTRGKTATQLADSTPRHPSFTTPERVGAAARSAYTT
GTSSSRSKV*
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mRNA from alignment at H-elongata_contig150527:168..832-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150527.3369.1 ID=mRNA_H-elongata_contig150527.3369.1|Name=mRNA_H-elongata_contig150527.3369.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=665bp|location=Sequence derived from alignment at H-elongata_contig150527:168..832- (Himanthalia elongata Himel1 dioecious)
CGTCGTGATCTTCCAGCAGCGGAGAAAAATAATGGATATCTTAGGTGCCG GAACTTCGGGTGCAACCAACTCTTCGACGAGGGGCAAAACAGGTTTGACA CAATCGACTGATTTTTGTGGTTCCAAGACTCCTTTGGATGTTTTTTTCGA GAGGTGGTTTTCTCCCTCCGCTCTTTCGGGTGGCGATGCTCGAGATCGAA CCATTGTCTGCCACCGATAGGCGCTCAATCGACCGCACCGTGGCCCACTT GTCTTAAAGTTGATCTGATGTAATGGAGGTGGTCGTACATCGTTCACGAG ACAGTGGTGACTTCGTGACCGCAACGTATTCAGTCGATTACGGGGCAAGG AGGACTTCCTTTGTTCCAAGAGAGCAGTAGACCCGATCCGTCGTAGTCAG GCCTGTGGCCCATACCAGCAGCTCAGTCTAACGCCCACGAACCTAGTATC AATCGCGAGAACCCCCGTCCCATCAATGGCAAATGACACCCCGACCCGTG GACGCTGTGCCTACCGCGTGGCTTGATATCATCGTCAACAGCGACACAGC TTGCCGATTCCACACCGCGCCACCCATCTTTCACGACACCCGAAAGGGTT GGGGCTGCTGCAAGAAGCGCGTATACGACTGGGACGAGTTCGAGCAGATC CAAGGTGTGACGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig150527:168..832-

>mRNA_H-elongata_contig150527.3369.1 ID=mRNA_H-elongata_contig150527.3369.1|Name=mRNA_H-elongata_contig150527.3369.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig150527:168..832- (Himanthalia elongata Himel1 dioecious)
ATGGATATCTTAGGTGCCGGAACTTCGGGTGCAACCAACTCTTCGACGAG
GGGCAAAACAGATGGATATCTTAGGTGCCGGAACTTCGGGTGCAACCAAC
TCTTCGACGAGGGGCAAAACAGCGACACAGCTTGCCGATTCCACACCGCG
CCACCCATCTTTCACGACACCCGAAAGGGTTGGGGCTGCTGCAAGAAGCG
CGTATACGACTGGGACGAGTTCGAGCAGATCCAAGGTGTGACGACACAGC
TTGCCGATTCCACACCGCGCCACCCATCTTTCACGACACCCGAAAGGGTT
GGGGCTGCTGCAAGAAGCGCGTATACGACTGGGACGAGTTCGAGCAGATC
CAAGGTGTGA
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