mRNA_H-elongata_contig150527.3369.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: D8LIZ6_ECTSI (Chp-1 / RAR1 homologue n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIZ6_ECTSI) HSP 1 Score: 126 bits (317), Expect = 1.000e-33 Identity = 53/66 (80.30%), Postives = 55/66 (83.33%), Query Frame = 1
Query: 19 AEKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVTV 216
A K G LRCRNFGCNQ +DE NSDTACRFHT PPIFHDTRKGW CCKKRVYDWDEFEQ+QG V
Sbjct: 130 APKRAGALRCRNFGCNQYYDEADNSDTACRFHTGPPIFHDTRKGWSCCKKRVYDWDEFEQLQGCQV 195
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: W7U2Z9_9STRA (Chord family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2Z9_9STRA) HSP 1 Score: 110 bits (276), Expect = 9.760e-28 Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1
Query: 16 AAEKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVT 213
++E + G LRC+N+GCNQ F E NS+ ACRFH APP+FHDT+KGW CC KRVYDWDEF I+G T
Sbjct: 109 SSESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCAKRVYDWDEFHTIEGCT 174
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A6V2Q7H8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2Q7H8_HETAK) HSP 1 Score: 105 bits (262), Expect = 9.540e-26 Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 19 AEKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVT 213
A+ N G LRCRN+GCNQ + E +N AC HTAPPIFHD RKGW CC KRVYDWDEF+QI G
Sbjct: 106 AQTNEGKLRCRNYGCNQWYLEAENGPEACGHHTAPPIFHDARKGWSCCAKRVYDWDEFQQIAGCA 170
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A196SL25_BLAHN (CHORD family protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SL25_BLAHN) HSP 1 Score: 102 bits (253), Expect = 1.750e-24 Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 1 RRDLPAAEKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVTV 216
+R + E + G +RC N+GC + + +N TACR+HTAPP+FHD KGW CC+KRVYDWDEF +I+G TV
Sbjct: 91 KRPVVVKEDHTGMVRCTNYGCYKWYKPEENGPTACRYHTAPPVFHDASKGWSCCQKRVYDWDEFHKIEGCTV 162
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: UPI000711E3EE (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E3EE) HSP 1 Score: 99.0 bits (245), Expect = 1.830e-23 Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 22 EKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVTV 216
E + G +RC N+GC Q + +N+ TAC +HTAPP+FHD KGW CC+KRVYDWDEF +I G TV
Sbjct: 95 EDHTGMVRCTNYGCYQWYRPEENNPTACHYHTAPPVFHDNSKGWSCCQKRVYDWDEFNKIPGCTV 159
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: D8LYK2_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LYK2_BLAHO) HSP 1 Score: 97.1 bits (240), Expect = 2.920e-23 Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 40 LRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVTV 216
+RC N+GC + + +NSDTAC +HT+PP+FHD KGW CC+KRVYDWDEF +I+G T+
Sbjct: 2 VRCTNYGCYKWYKPEENSDTACHYHTSPPVFHDASKGWSCCQKRVYDWDEFYKIEGCTI 60
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A836CMP5_9STRA (Chp-1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP5_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.690e-22 Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 16 AAEKNNGYLRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVT 213
AA +G LRCRN+GC + E N AC HTAPP+FHDT+KGW CC KRVYDWDEF+ I G
Sbjct: 115 AAADTDGLLRCRNYGCGARYAEADNHARACAHHTAPPVFHDTKKGWSCCAKRVYDWDEFQAIAGCA 180
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A1V9YKW6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKW6_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.330e-19 Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 40 LRCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCK-KRVYDWDEFEQIQGVTV 216
++C+NFGC + F + +N + ACR+H APP FHDT+KGW CC K VYDWD+FE+I+ TV
Sbjct: 141 VQCKNFGCREKFVDSENHELACRYHKAPPTFHDTKKGWSCCSSKMVYDWDDFEKIEPCTV 200
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A7S2HP00_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HP00_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.350e-19 Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 46 CRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRV-YDWDEFEQIQGVTV 216
C+N+GC Q F E +N DTACR HTAPP FH+ RKGW CCK +V DW+EF+QI G V
Sbjct: 31 CKNYGCAQRFKEEENHDTACRHHTAPPFFHECRKGWTCCKSKVAMDWEEFQQIPGCAV 88
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Match: A0A7S3FTL0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3FTL0_9SPIT) HSP 1 Score: 83.2 bits (204), Expect = 4.510e-19 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 43 RCRNFGCNQLFDEGQNSDTACRFHTAPPIFHDTRKGWGCCKKRVYDWDEFEQIQGVTV 216
RC+ GC ++F E N T+C+FH+ PIFHD +KGW CC K YDWDEF++I+G +
Sbjct: 12 RCKRPGCGKMFSEAANDGTSCKFHSGKPIFHDIKKGWECCGKVCYDWDEFQKIEGCCI 69 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150527.3369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig150527.3369.1 >prot_H-elongata_contig150527.3369.1 ID=prot_H-elongata_contig150527.3369.1|Name=mRNA_H-elongata_contig150527.3369.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp MDILGAGTSGATNSSTRGKTATQLADSTPRHPSFTTPERVGAAARSAYTTback to top mRNA from alignment at H-elongata_contig150527:168..832- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig150527.3369.1 ID=mRNA_H-elongata_contig150527.3369.1|Name=mRNA_H-elongata_contig150527.3369.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=665bp|location=Sequence derived from alignment at H-elongata_contig150527:168..832- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig150527:168..832- >mRNA_H-elongata_contig150527.3369.1 ID=mRNA_H-elongata_contig150527.3369.1|Name=mRNA_H-elongata_contig150527.3369.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig150527:168..832- (Himanthalia elongata Himel1 dioecious)back to top |