mRNA_H-elongata_contig150418.3365.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150418.3365.1
Unique NamemRNA_H-elongata_contig150418.3365.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Match: D7FVK1_ECTSI (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK1_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.260e-27
Identity = 58/83 (69.88%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    1 QDPSIPLLPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGH----------RRGALIKPWLPTEVKEKRDWDISSSERLDIYR 219
            QDP++  LPVIGNGDILSWRD+E+RLEQA  EL    G G            RGALIKPWLPTEVKEKRDWDISSSERLDIYR
Sbjct:  550 QDPALRPLPVIGNGDILSWRDHEERLEQA-RELQSQQGEGEGSQWSTCCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 631
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BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Match: A0A8J2SC62_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC62_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.310e-24
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 QDPSIPLLPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGHRRGALIKPWLPTEVKEKRDWDISSSERLDIYR 219
            QD SIP LP++GNGD+ SWRDY ++ E A A     D     RGALIKPWLPTE+KEKRDWDISSSERLDI R
Sbjct:  335 QDESIPALPIVGNGDVFSWRDYAEKRELAPATC---DCAMLARGALIKPWLPTELKEKRDWDISSSERLDILR 404
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BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Match: A0A7S4DAY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAY5_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 2.540e-22
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 QDPSIPLLPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGHRRGALIKPWLPTEVKEKRDWDISSSERLDIYR 219
            +   +P+LPVIGNGDILSWR +ED L+ A  ++ D   +G  RGALIKPWLPTE+KE+RDWDIS+ ERLDI++
Sbjct:   61 ESSRLPVLPVIGNGDILSWRQWED-LKVAHPDILDCAMLG--RGALIKPWLPTEIKEQRDWDISAGERLDIFQ 130
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BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Match: A0A835ZAB5_9STRA (Dus domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAB5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.440e-20
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   22 LPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGHRRGALIKPWLPTEVKEKRDWDISSSERLDIYR 219
            LPVIGNGDI+SW+D++  L++    +     VG  RGALIKPWLPTE+KEKRDWDIS++ERLDI +
Sbjct:  200 LPVIGNGDIMSWQDHKQHLDEGGKNMSTCAMVG--RGALIKPWLPTEIKEKRDWDISATERLDILK 263
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BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Match: F0YG32_AURAN (Dus domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG32_AURAN)

HSP 1 Score: 89.0 bits (219), Expect = 2.790e-19
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 QDPSIPLLPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGHRRGALIKPWLPTEVKEKRDWDISSSERLDIYR 219
            QD +IP LP+IGNGDI+S+ D+E++ + A +     D     RGALIKPWLPTE+ EKR WDIS+SERLDI R
Sbjct:  200 QDDAIPKLPIIGNGDIMSYADWEEKRKTAPSTC---DCAMLARGALIKPWLPTELHEKRAWDISASERLDILR 269
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BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Match: R9PBS1_PSEHS (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Pseudozyma hubeiensis (strain SY62) TaxID=1305764 RepID=R9PBS1_PSEHS)

HSP 1 Score: 89.7 bits (221), Expect = 3.060e-19
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 QDPSIPLLPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGHRRGALIKPWLPTEVKEKRDWDISSSERLDIYR 219
             +P +  +PV GNGD+ SW+DY +RL++        DG    RGALIKPWL TE+KE+RDWDISS ERLDI+R
Sbjct:  661 DEPEMVPIPVFGNGDVYSWQDYYERLDRTRV-----DGEMIARGALIKPWLFTEIKERRDWDISSRERLDIFR 728
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BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Match: A0A7S0XER5_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XER5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.980e-19
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    1 QDPSIPLLPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGH------RRGALIKPWLPTEVKEKRDWDISSSERLDIYR 219
            QD + PL+P+IGNGDILSW D+E         + D++ +G        RGAL+KPWLPTE+K+ RD+DIS++ERLD+ +
Sbjct:  296 QDRNYPLVPIIGNGDILSWHDWESHQNILQTNIQDNESIGLCSCAMIGRGALVKPWLPTEIKDSRDFDISANERLDMLK 374
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BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Match: A0A0F7S4W5_9BASI (Related to DUS3-member of dihydrouridine synthase family n=1 Tax=Sporisorium scitamineum TaxID=49012 RepID=A0A0F7S4W5_9BASI)

HSP 1 Score: 89.0 bits (219), Expect = 5.700e-19
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 QDPSIPLLPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGHRRGALIKPWLPTEVKEKRDWDISSSERLDIYR 219
             +P +  +PV GNGD+ SW+DY +R+E+      D DG    RGALIKPWL TE+KE+RDWDISS ERLD+ R
Sbjct:  664 DEPEMVPIPVYGNGDVYSWQDYYERMERT-----DVDGEMIARGALIKPWLFTEIKERRDWDISSRERLDMMR 731
[Close]
BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Match: I2FXP6_USTH4 (Related to DUS3-member of dihydrouridine synthase family n=3 Tax=Ustilago TaxID=5269 RepID=I2FXP6_USTH4)

HSP 1 Score: 89.0 bits (219), Expect = 5.700e-19
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 QDPSIPLLPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGHRRGALIKPWLPTEVKEKRDWDISSSERLDIYR 219
             +P +  +P+ GNGD+ SW+DY +RL +        DG    RGALIKPWL TE+KE+RDWDISS ERLD++R
Sbjct:  676 DEPEMVPIPIYGNGDVYSWQDYYERLSRTAV-----DGEMIARGALIKPWLLTEIKERRDWDISSRERLDVFR 743
[Close]
BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Match: A0A7S3DY45_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DY45_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.020e-18
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   13 IPLLPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGHRRGALIKPWLPTEVKEKRDWDISSSERLDIYR 219
            IP LPVIGNGD+ S++DYE ++     +L     +G  RGALIKPWLPTE+KEKR WDISSSERLD+ +
Sbjct:    1 IPRLPVIGNGDLFSYKDYEKKV-LGNPDLVPCAMIG--RGALIKPWLPTEIKEKRVWDISSSERLDMLK 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150418.3365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVK1_ECTSI1.260e-2769.88tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 T... [more]
A0A8J2SC62_9STRA4.310e-2467.12Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4DAY5_HETAK2.540e-2261.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZAB5_9STRA4.440e-2062.12Dus domain-containing protein n=1 Tax=Tribonema mi... [more]
F0YG32_AURAN2.790e-1958.90Dus domain-containing protein (Fragment) n=1 Tax=A... [more]
R9PBS1_PSEHS3.060e-1956.16tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]
A0A7S0XER5_9STRA4.980e-1949.37Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A0F7S4W5_9BASI5.700e-1956.16Related to DUS3-member of dihydrouridine synthase ... [more]
I2FXP6_USTH45.700e-1953.42Related to DUS3-member of dihydrouridine synthase ... [more]
A0A7S3DY45_9STRA1.020e-1860.87Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150418contigH-elongata_contig150418:873..1394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog2880.D7FVK1
Preferred namedus3l
KEGG koko:K05544
GOsGO:0002943,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2333@2759
EC1.3.1.89
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929890.6226468-CDS-H-elongata_contig150418:872..10001622929890.6226468-CDS-H-elongata_contig150418:872..1000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150418 873..1000 +
1691679196.9520643-CDS-H-elongata_contig150418:872..10001691679196.9520643-CDS-H-elongata_contig150418:872..1000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150418 873..1000 +
1622929890.6393206-CDS-H-elongata_contig150418:1300..13941622929890.6393206-CDS-H-elongata_contig150418:1300..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150418 1301..1394 +
1691679196.9635901-CDS-H-elongata_contig150418:1300..13941691679196.9635901-CDS-H-elongata_contig150418:1300..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150418 1301..1394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150418.3365.1prot_H-elongata_contig150418.3365.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150418 873..1394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150418.3365.1

>prot_H-elongata_contig150418.3365.1 ID=prot_H-elongata_contig150418.3365.1|Name=mRNA_H-elongata_contig150418.3365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
QDPSIPLLPVIGNGDILSWRDYEDRLEQAIAELDDSDGVGHRRGALIKPW
LPTEVKEKRDWDISSSERLDIYR*
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mRNA from alignment at H-elongata_contig150418:873..1394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150418.3365.1 ID=mRNA_H-elongata_contig150418.3365.1|Name=mRNA_H-elongata_contig150418.3365.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at H-elongata_contig150418:873..1394+ (Himanthalia elongata Himel1 dioecious)
CAAGATCCATCCATCCCGCTGCTTCCGGTGATCGGCAACGGGGATATCTT
GTCCTGGCGGGACTACGAGGATAGGCTGGAGCAAGCGATAGCGGAGCTGG
ACGATTCAGACGGGGTGGGGCACCGGCGGTGGAGCACGTGCTGCATGCTC
GCGAGGTAGGGGTCAGCATATCCACGTTTTTCCAAACTATTTACCATTGG
CGAGTTATGCTAATCCTATGACTTTGTTCTCGATTTCGTAGTCATTACTT
TGCTTTGTTCAGCCGTTCTAAATGTTCACTGTTACTGGATGAAAACTTTT
AGTTTTCTCGGGGCAAATGTAAACTAAAGCTTGATCGACTCAGATCCGCA
TCCAATTTGCACCGGAAGCTTCCAATTTAATGAGGTACTCCCTGTCCGGC
TTTCTCGCGCCGTGGGCGTTTCTGACAGGGGTGCCCTCATCAAGCCGTGG
CTGCCTACCGAGGTGAAGGAGAAAAGAGATTGGGACATCTCCTCTTCGGA
ACGACTCGACATTTACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig150418:873..1394+

>mRNA_H-elongata_contig150418.3365.1 ID=mRNA_H-elongata_contig150418.3365.1|Name=mRNA_H-elongata_contig150418.3365.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig150418:873..1394+ (Himanthalia elongata Himel1 dioecious)
CAAGATCCATCCATCCCGCTGCTTCCGGTGATCGGCAACGGGGATATCTT
GTCCTGGCGGGACTACGAGGATAGGCTGGAGCAAGCGATAGCGGAGCTGG
ACGATTCAGACGGGGTGGGGCACCGGCGCAAGATCCATCCATCCCGCTGC
TTCCGGTGATCGGCAACGGGGATATCTTGTCCTGGCGGGACTACGAGGAT
AGGCTGGAGCAAGCGATAGCGGAGCTGGACGATTCAGACGGGGTGGGGCA
CCGGCGGGGTGCCCTCATCAAGCCGTGGCTGCCTACCGAGGTGAAGGAGA
AAAGAGATTGGGACATCTCCTCTTCGGAACGACTCGACATTTACAGGTGA
GGGTGCCCTCATCAAGCCGTGGCTGCCTACCGAGGTGAAGGAGAAAAGAG
ATTGGGACATCTCCTCTTCGGAACGACTCGACATTTACAGGTGA
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