mRNA_H-elongata_contig150404.3364.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150404.3364.1
Unique NamemRNA_H-elongata_contig150404.3364.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150404.3364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150404contigH-elongata_contig150404:14..1383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1372
Cds size1368
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929890.5773013-CDS-H-elongata_contig150404:13..13811622929890.5773013-CDS-H-elongata_contig150404:13..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150404 14..1381 +
1691679196.9422657-CDS-H-elongata_contig150404:13..13811691679196.9422657-CDS-H-elongata_contig150404:13..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150404 14..1381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150404.3364.1prot_H-elongata_contig150404.3364.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150404 14..1381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150404.3364.1

>prot_H-elongata_contig150404.3364.1 ID=prot_H-elongata_contig150404.3364.1|Name=mRNA_H-elongata_contig150404.3364.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=456bp
VERFVEEIRGRATVPVNVAPRESIGMLMPSHPPELKGKDDLGTFLVRFRQ
WASLNRCESALDSNSEVNVSGKSREELERLHDPTLVEQSLRAGQSLTKAL
ERERDYMQMVIDIGYLSEAWRTLGKIAADSEESAYNKVLREYESLKIGTN
ERVAEYFVRVNVIRKRLTHHNVTAPPRDVRNRVLSGLIPRFPDEARVFAL
KGEFELSDLEAGITRAESFRLEQERRNATVHALAVAHASGGRTGTGGGPR
GQDRRRKKGARHHGAGRDQNRQQGHPPQMNPVHRQQHPRQQQQPYWSGAP
YQQQDPRQPNPRRPYHRGGGQPHWHQRRACQHCGEEEHFPARCRIPPAPA
SQPYLSAPPRANVAHYSSYPSPQWSSHGYGGGHYRPPSPPVSYGPPENYY
GQPPPPPENYGPPPPPDSYAPAPPMQSPPEPHGPPPTAPPSDANWSFPSG
HSQALQ
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mRNA from alignment at H-elongata_contig150404:14..1383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150404.3364.1 ID=mRNA_H-elongata_contig150404.3364.1|Name=mRNA_H-elongata_contig150404.3364.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1370bp|location=Sequence derived from alignment at H-elongata_contig150404:14..1383+ (Himanthalia elongata Himel1 dioecious)
GTCGAGCGCTTCGTTGAGGAGATAAGAGGCCGTGCGACGGTGCCGGTAAA
TGTGGCACCAAGAGAGAGCATTGGTATGTTAATGCCATCGCACCCGCCTG
AACTAAAAGGAAAAGATGATTTAGGAACTTTCTTGGTAAGATTCCGACAG
TGGGCCTCCTTAAACCGATGCGAATCGGCACTTGACTCTAATTCAGAAGT
GAACGTTTCCGGAAAATCCCGTGAAGAATTGGAGAGACTTCACGATCCCA
CCCTGGTAGAACAATCCCTCAGGGCGGGACAGTCGCTCACGAAAGCATTA
GAGAGAGAGAGGGATTACATGCAAATGGTAATCGATATAGGTTACCTCTC
GGAAGCATGGCGAACGTTGGGCAAAATCGCAGCTGACTCAGAGGAGTCAG
CGTACAATAAGGTATTACGAGAATACGAATCGCTTAAAATAGGAACCAAT
GAACGTGTTGCCGAATACTTTGTTCGGGTAAATGTGATTCGAAAAAGGCT
GACCCATCACAACGTGACAGCACCCCCTCGTGATGTAAGGAATAGAGTAC
TAAGTGGCCTAATCCCCCGCTTCCCTGATGAAGCACGTGTGTTCGCACTG
AAAGGTGAATTTGAATTGAGCGACCTGGAAGCTGGGATTACCCGGGCGGA
GAGCTTCCGGTTGGAACAAGAGAGGAGGAACGCTACAGTCCACGCGCTAG
CCGTCGCTCATGCGAGCGGCGGCCGAACCGGGACTGGAGGTGGACCCCGT
GGGCAAGATAGGAGAAGGAAAAAAGGCGCGAGGCACCACGGAGCTGGCCG
AGACCAAAACCGGCAGCAGGGTCATCCGCCGCAGATGAATCCTGTACACC
GGCAACAACATCCGCGGCAACAGCAACAGCCCTACTGGAGTGGAGCCCCG
TACCAGCAACAAGACCCGCGGCAACCCAACCCGCGGAGACCTTATCATCG
GGGAGGAGGTCAGCCGCATTGGCACCAGAGGCGCGCGTGTCAACACTGTG
GTGAGGAGGAACATTTCCCCGCCAGGTGCAGAATCCCACCTGCACCAGCG
TCGCAGCCCTACTTGAGTGCACCTCCTAGAGCTAACGTTGCACACTACAG
CTCGTACCCCTCTCCCCAGTGGTCTTCGCACGGATACGGGGGCGGACACT
ACAGGCCTCCATCGCCGCCGGTAAGCTACGGGCCTCCGGAGAACTACTAT
GGACAGCCCCCACCACCTCCGGAGAACTATGGGCCTCCACCGCCGCCGGA
CAGCTATGCACCTGCCCCGCCGATGCAATCACCGCCGGAACCCCACGGAC
CACCTCCAACAGCGCCTCCCTCCGACGCCAACTGGAGCTTCCCGTCCGGG
CATTCCCAGGCTCTACAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig150404:14..1383+

>mRNA_H-elongata_contig150404.3364.1 ID=mRNA_H-elongata_contig150404.3364.1|Name=mRNA_H-elongata_contig150404.3364.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2736bp|location=Sequence derived from alignment at H-elongata_contig150404:14..1383+ (Himanthalia elongata Himel1 dioecious)
GTCGAGCGCTTCGTTGAGGAGATAAGAGGCCGTGCGACGGTGCCGGTAAA
TGTGGCACCAAGAGAGAGCATTGGTATGTTAATGCCATCGCACCCGCCTG
AACTAAAAGGAAAAGATGATTTAGGAACTTTCTTGGTAAGATTCCGACAG
TGGGCCTCCTTAAACCGATGCGAATCGGCACTTGACTCTAATTCAGAAGT
GAACGTTTCCGGAAAATCCCGTGAAGAATTGGAGAGACTTCACGATCCCA
CCCTGGTAGAACAATCCCTCAGGGCGGGACAGTCGCTCACGAAAGCATTA
GAGAGAGAGAGGGATTACATGCAAATGGTAATCGATATAGGTTACCTCTC
GGAAGCATGGCGAACGTTGGGCAAAATCGCAGCTGACTCAGAGGAGTCAG
CGTACAATAAGGTATTACGAGAATACGAATCGCTTAAAATAGGAACCAAT
GAACGTGTTGCCGAATACTTTGTTCGGGTAAATGTGATTCGAAAAAGGCT
GACCCATCACAACGTGACAGCACCCCCTCGTGATGTAAGGAATAGAGTAC
TAAGTGGCCTAATCCCCCGCTTCCCTGATGAAGCACGTGTGTTCGCACTG
AAAGGTGAATTTGAATTGAGCGACCTGGAAGCTGGGATTACCCGGGCGGA
GAGCTTCCGGTTGGAACAAGAGAGGAGGAACGCTACAGTCCACGCGCTAG
CCGTCGCTCATGCGAGCGGCGGCCGAACCGGGACTGGAGGTGGACCCCGT
GGGCAAGATAGGAGAAGGAAAAAAGGCGCGAGGCACCACGGAGCTGGCCG
AGACCAAAACCGGCAGCAGGGTCATCCGCCGCAGATGAATCCTGTACACC
GGCAACAACATCCGCGGCAACAGCAACAGCCCTACTGGAGTGGAGCCCCG
TACCAGCAACAAGACCCGCGGCAACCCAACCCGCGGAGACCTTATCATCG
GGGAGGAGGTCAGCCGCATTGGCACCAGAGGCGCGCGTGTCAACACTGTG
GTGAGGAGGAACATTTCCCCGCCAGGTGCAGAATCCCACCTGCACCAGCG
TCGCAGCCCTACTTGAGTGCACCTCCTAGAGCTAACGTTGCACACTACAG
CTCGTACCCCTCTCCCCAGTGGTCTTCGCACGGATACGGGGGCGGACACT
ACAGGCCTCCATCGCCGCCGGTAAGCTACGGGCCTCCGGAGAACTACTAT
GGACAGCCCCCACCACCTCCGGAGAACTATGGGCCTCCACCGCCGCCGGA
CAGCTATGCACCTGCCCCGCCGATGCAATCACCGCCGGAACCCCACGGAC
CACCTCCAACAGCGCCTCCCTCCGACGCCAACTGGAGCTTCCCGTCCGGG
CATTCCCAGGCTCTACAGGTCGAGCGCTTCGTTGAGGAGATAAGAGGCCG
TGCGACGGTGCCGGTAAATGTGGCACCAAGAGAGAGCATTGGTATGTTAA
TGCCATCGCACCCGCCTGAACTAAAAGGAAAAGATGATTTAGGAACTTTC
TTGGTAAGATTCCGACAGTGGGCCTCCTTAAACCGATGCGAATCGGCACT
TGACTCTAATTCAGAAGTGAACGTTTCCGGAAAATCCCGTGAAGAATTGG
AGAGACTTCACGATCCCACCCTGGTAGAACAATCCCTCAGGGCGGGACAG
TCGCTCACGAAAGCATTAGAGAGAGAGAGGGATTACATGCAAATGGTAAT
CGATATAGGTTACCTCTCGGAAGCATGGCGAACGTTGGGCAAAATCGCAG
CTGACTCAGAGGAGTCAGCGTACAATAAGGTATTACGAGAATACGAATCG
CTTAAAATAGGAACCAATGAACGTGTTGCCGAATACTTTGTTCGGGTAAA
TGTGATTCGAAAAAGGCTGACCCATCACAACGTGACAGCACCCCCTCGTG
ATGTAAGGAATAGAGTACTAAGTGGCCTAATCCCCCGCTTCCCTGATGAA
GCACGTGTGTTCGCACTGAAAGGTGAATTTGAATTGAGCGACCTGGAAGC
TGGGATTACCCGGGCGGAGAGCTTCCGGTTGGAACAAGAGAGGAGGAACG
CTACAGTCCACGCGCTAGCCGTCGCTCATGCGAGCGGCGGCCGAACCGGG
ACTGGAGGTGGACCCCGTGGGCAAGATAGGAGAAGGAAAAAAGGCGCGAG
GCACCACGGAGCTGGCCGAGACCAAAACCGGCAGCAGGGTCATCCGCCGC
AGATGAATCCTGTACACCGGCAACAACATCCGCGGCAACAGCAACAGCCC
TACTGGAGTGGAGCCCCGTACCAGCAACAAGACCCGCGGCAACCCAACCC
GCGGAGACCTTATCATCGGGGAGGAGGTCAGCCGCATTGGCACCAGAGGC
GCGCGTGTCAACACTGTGGTGAGGAGGAACATTTCCCCGCCAGGTGCAGA
ATCCCACCTGCACCAGCGTCGCAGCCCTACTTGAGTGCACCTCCTAGAGC
TAACGTTGCACACTACAGCTCGTACCCCTCTCCCCAGTGGTCTTCGCACG
GATACGGGGGCGGACACTACAGGCCTCCATCGCCGCCGGTAAGCTACGGG
CCTCCGGAGAACTACTATGGACAGCCCCCACCACCTCCGGAGAACTATGG
GCCTCCACCGCCGCCGGACAGCTATGCACCTGCCCCGCCGATGCAATCAC
CGCCGGAACCCCACGGACCACCTCCAACAGCGCCTCCCTCCGACGCCAAC
TGGAGCTTCCCGTCCGGGCATTCCCAGGCTCTACAG
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