mRNA_H-elongata_contig15029.3361.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.100e-30 Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1
Query: 1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWKIV 207
DPL+WW+V+ DFP+LA L RR LAIPATQAES+RLFSCAGNIVTK RN LAP+TVEL VLLRHSWKIV
Sbjct: 222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIV 290
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 2.940e-24 Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query: 28 GVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWKIV 207
DFP+LA L RR LAIPATQA+S+RLFSCAGNIVTK RN LAP+TVEL VLLRHSWKIV
Sbjct: 151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIV 210
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 1.360e-14 Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1
Query: 4 PLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHS 195
PL WW+VK ++P LA L RR L IPA QA+S+R+FS AG +VTKTR ++ P V L V LR++
Sbjct: 480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A1A8V9R7_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8V9R7_NOTFU) HSP 1 Score: 73.9 bits (180), Expect = 2.890e-14 Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWK 201
DPL WW+V V+FPN++ L R+ L IPAT + S+RLFS GN+VT R+ L P++V + V L + K
Sbjct: 190 DPLLWWKVHTVNFPNISRLARKNLCIPATSSASERLFSTGGNVVTCLRSSLKPTSVNMLVFLTKNLK 256
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A1A8A617_NOTFU (Dimer_Tnp_hAT domain-containing protein (Fragment) n=3 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8A617_NOTFU) HSP 1 Score: 72.8 bits (177), Expect = 1.090e-13 Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWK 201
DPL WW+V V+FPN++ L R+ L IPAT + S+RLFS GN+VT R+ L P++V + V L + K
Sbjct: 220 DPLLWWKVHTVNFPNISRLARKNLCIPATSSASERLFSTGGNVVTCLRSFLKPTSVNMLVFLTKNLK 286
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 1.190e-13 Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWKIV 207
+PL+ W+ K +++P LA L RR LAIP++QA+S+R+FS AG VT TR++L VEL V LR+ W +V
Sbjct: 482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVV 550
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A8C1IN65_CYPCA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1IN65_CYPCA) HSP 1 Score: 73.2 bits (178), Expect = 1.270e-13 Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWKI 204
+PL WW+V V+FPN++ L ++ L +PAT S+R+FS AGN+VT R+ L P+TV + V L + K+
Sbjct: 291 NPLTWWKVHEVNFPNISRLVKKYLCVPATSTPSERVFSAAGNVVTCQRSLLKPATVNMLVFLTKNLKV 358
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: UPI002013FBC1 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI002013FBC1) HSP 1 Score: 73.2 bits (178), Expect = 1.610e-13 Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLL 186
DPL WW+V + +P L I+ R+ L +PAT A S+RLFS GNIVT TR+ L P+ V + V L
Sbjct: 440 DPLAWWRVHKISYPQLCIMARKYLCVPATSAPSERLFSTGGNIVTCTRSSLKPAKVNILVFL 501
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A1A8M8J6_9TELE (BED-type domain-containing protein n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8M8J6_9TELE) HSP 1 Score: 73.2 bits (178), Expect = 1.640e-13 Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWK 201
DPL WW+V V+FPN++ L R+ L IPAT + S+RLFS GN+VT R+ L P++V + V L + K
Sbjct: 588 DPLLWWKVHTVNFPNISRLARKYLCIPATSSASERLFSTGGNVVTCLRSSLKPTSVNMLVFLTKNLK 654
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A6P6NAP0_CARAU (zinc finger BED domain-containing protein 1-like n=7 Tax=Clupeocephala TaxID=186625 RepID=A0A6P6NAP0_CARAU) HSP 1 Score: 73.2 bits (178), Expect = 1.640e-13 Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLL 186
DPL WW+V + +P L I+ R+ L +PAT A S+RLFS GNIVT TR+ L P+ V + V L
Sbjct: 599 DPLAWWRVHKISYPQLCIMARKYLCVPATSAPSERLFSTGGNIVTCTRSSLKPAKVNILVFL 660 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15029.3361.1 >prot_H-elongata_contig15029.3361.1 ID=prot_H-elongata_contig15029.3361.1|Name=mRNA_H-elongata_contig15029.3361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKback to top mRNA from alignment at H-elongata_contig15029:7541..7747+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15029.3361.1 ID=mRNA_H-elongata_contig15029.3361.1|Name=mRNA_H-elongata_contig15029.3361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig15029:7541..7747+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15029:7541..7747+ >mRNA_H-elongata_contig15029.3361.1 ID=mRNA_H-elongata_contig15029.3361.1|Name=mRNA_H-elongata_contig15029.3361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig15029:7541..7747+ (Himanthalia elongata Himel1 dioecious)back to top |