mRNA_H-elongata_contig150169.3355.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Match: D7FYP1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP1_ECTSI) HSP 1 Score: 107 bits (266), Expect = 4.820e-25 Identity = 64/128 (50.00%), Postives = 76/128 (59.38%), Query Frame = 1
Query: 7 QVDDLAAAVRWISDNTAELGFDTLPEAFLMGHSSGAHIALLFLVRRVKEALLGAGNVEAIA-----------------------------GDGS--GSEGG-QLKVEGFIGLSGVYDVYRHYLFESWR 294
QV+DLA A+RWIS NT +GFD PE +LMGHSSGAHI +L+LV++ +E G EA A GDG G +GG QL VEGFIGLSGVYDV+RHYL+ESWR
Sbjct: 170 QVNDLAEAMRWISRNTGTMGFDRDPEVYLMGHSSGAHIGMLYLVQQAEER--GMAEAEAAARANAPTGLPNIPGGXXXXXXXXXXXXXXXGDGDVIGEDGGRQLDVEGFIGLSGVYDVHRHYLYESWR 295
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Match: A0A1X6P614_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P614_PORUM) HSP 1 Score: 57.8 bits (138), Expect = 1.340e-7 Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 1
Query: 7 QVDDLAAAVRWISDNTAELGFDTLPEAFLMGHSSGAHIALLFLVRRVKEALLGAGNVEAIAGDGSGSEGGQLKVEG-FIGLSGVYDVYRHYLFESWR 294
Q D+AA +R ++ G T+ L GHSSGAH+ +L L+R G + A DG+ + GG + + FIG +GVYDV HY +E+WR
Sbjct: 196 QAADVAALLRHVAAVRLVRGGRTV----LWGHSSGAHVCVLALLRAA-----GLADASARGADGAAAAGGGVPLPAAFIGAAGVYDVGDHYAYEAWR 283
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Match: W7U0V2_9STRA (Peptidase_S9 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0V2_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 2.400e-7 Identity = 39/98 (39.80%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 4 NQVDDLAAAVRWIS-DNTAELGFDTLPEAFLMGHSSGAHIALLFLVRRVKEALLGAGNVEAIAGDGSGSEGGQLKVEGFIGLSGVYDVYRHYLFESWR 294
+QVDDL + ++ D + D +P FL GHSSGAHI LFL+R LGA + +V+GF+GLSGVYDV H+ +E+ R
Sbjct: 170 HQVDDLQHCLEFLMLDPRSPYSADQVP-IFLSGHSSGAHICSLFLLRET----LGAPGYNTLP----------RRVQGFVGLSGVYDVAVHHEYEARR 252
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Match: UPI0011767E52 (probable isoprenylcysteine alpha-carbonyl methylesterase ICME n=1 Tax=Salarias fasciatus TaxID=181472 RepID=UPI0011767E52) HSP 1 Score: 55.1 bits (131), Expect = 1.140e-6 Identity = 33/98 (33.67%), Postives = 48/98 (48.98%), Query Frame = 1
Query: 10 VDDLAAAVRWISDNTAELGFDTLPEAFLMGHSSGAHIALL---FLVRRVKEALLGAGNVEAIAGDGSGSEGGQLKVEGFIGLSGVYDVYRHYLFESWR 294
V D+A + W +N FDT + L+GHS+GAH+ L FL+ +E + + L + G IGLSGVYD+ HY++E R
Sbjct: 169 VQDVADCLVWAQENGRTFNFDT-EKVVLIGHSAGAHLCALTTLFLIDEREELFIELSQQRDVT----------LSIRGIIGLSGVYDIMDHYVYEQKR 255
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Match: A0A1V9Z9W1_9STRA (Carbohydrate esterase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9W1_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.150e-6 Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 4 NQVDDLAAAVRWISDNTAELGFDTLPEAFLMGHSSGAHIALLFLVRRVKEALLGAGNVEAIAGDGSGSEGGQLKVEGFIGLSGVYDVYRHYLFESWR 294
+ ++DL A V+W +N + G D + L GHSSGAH+A L L+ K AL IA S +++ F+GLSG YD+ HY FES R
Sbjct: 168 DMLEDLEAIVQWTVENAPKHGGD-VSNITLSGHSSGAHVASLVLL---KSAL-------RIAAKSQKSFEVAPRIKAFVGLSGPYDMDDHYAFESQR 253
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Match: A0A6G0X708_9STRA (Abhydrolase_3 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X708_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 7.550e-6 Identity = 36/97 (37.11%), Postives = 45/97 (46.39%), Query Frame = 1
Query: 4 NQVDDLAAAVRWISDNTAELGFDTLPEAFLMGHSSGAHIALLFLVRRVKEALLGAGNVEAIAGDGSGSEGGQLKVEGFIGLSGVYDVYRHYLFESWR 294
+ +DDL + W +N A G D L GHSSGAH+ L LVR + L VE + V+ FIGL G YD+ HY FE R
Sbjct: 185 DMIDDLRDVIAWTIENIASHGGDP-KRISLAGHSSGAHLTSLLLVRSAFQDSLFPDPVEPVH-----------HVKSFIGLCGPYDITDHYEFERDR 269
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Match: B7FZB1_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZB1_PHATC) HSP 1 Score: 52.4 bits (124), Expect = 1.040e-5 Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 91 LMGHSSGAHIALLFLVRR-VKEALLGAGNVEAIAGDGSGSEGGQLKVEGFIGLSGVYDVYRHYLFESWR 294
+MGHSSGAHIALLFLV R + L ++ +GSG +++ F+GLSG YD+ H+ +E+ R
Sbjct: 251 VMGHSSGAHIALLFLVDRFITSTKL------SVTANGSGD----FRIDSFVGLSGPYDISHHFDYEANR 309
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Match: UPI00191861A3 (Uncharacterized protein n=1 Tax=Paraburkholderia metrosideri TaxID=580937 RepID=UPI00191861A3) HSP 1 Score: 51.2 bits (121), Expect = 2.570e-5 Identity = 36/84 (42.86%), Postives = 42/84 (50.00%), Query Frame = 1
Query: 10 VDDLAAAVRWISDNTAELGFDTLPEAFLMGHSSGAHIALLFLVRRVKEALLGAGNVEAIAGDGSGSEGGQLKVEGFIGLSGVYD 261
VDD AAAVRW D+ AE G D FLMGHS+GAHIA+L L A + A + G IGL+G YD
Sbjct: 118 VDDAAAAVRWARDHAAEFGGDP-SRIFLMGHSAGAHIAMLLAT---DGRYLAAQQMSKCA------------LSGVIGLAGPYD 185
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Match: A0A1E7FI55_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FI55_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 2.690e-5 Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 91 LMGHSSGAHIALLFLVRRVKEALLGAGNVEAIAG----DGSGSEGGQLKVEGFIGLSGVYDVYRHYLFESWR 294
+MGHSSGAHI+LL+LV R K+ L D + S+ + FIG+SGVY++ H+ +ES R
Sbjct: 240 VMGHSSGAHISLLWLVERAKQQLQXXXXXXXXXXXXXFDANNSKNKNKIITSFIGISGVYNINHHFDYESGR 311
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Match: A0A7S2MJ95_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MJ95_9STRA) HSP 1 Score: 50.4 bits (119), Expect = 4.560e-5 Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 91 LMGHSSGAHIALLFLVRRVKEALLGAGNVEAIAGDGSGSEGGQLKVEGFIGLSGVYDVYRHYLFESWR 294
L+GHS+GAHI+ L +++R K ++EA + G E + + FIGLSGVY++ H+ FES R
Sbjct: 108 LVGHSTGAHISFLTVLKRSKA------HMEA---EKQGKESKDVFINSFIGLSGVYNIQNHFEFESGR 166 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150169.3355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig150169.3355.1 >prot_H-elongata_contig150169.3355.1 ID=prot_H-elongata_contig150169.3355.1|Name=mRNA_H-elongata_contig150169.3355.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp TNQVDDLAAAVRWISDNTAELGFDTLPEAFLMGHSSGAHIALLFLVRRVKback to top mRNA from alignment at H-elongata_contig150169:355..651- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig150169.3355.1 ID=mRNA_H-elongata_contig150169.3355.1|Name=mRNA_H-elongata_contig150169.3355.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig150169:355..651- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig150169:355..651- >mRNA_H-elongata_contig150169.3355.1 ID=mRNA_H-elongata_contig150169.3355.1|Name=mRNA_H-elongata_contig150169.3355.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig150169:355..651- (Himanthalia elongata Himel1 dioecious)back to top |