mRNA_H-elongata_contig150081.3353.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150081.3353.1
Unique NamemRNA_H-elongata_contig150081.3353.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig150081.3353.1 vs. uniprot
Match: D7G382_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G382_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 9.370e-40
Identity = 74/83 (89.16%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 RFWDEALMMGVKEQLLEGPANV-RWDDLQGEARRDAVARTHNVVFSQLASIAFNMLECGVDGARVRIEVTRKCRESQLGEAQV 246
            RFW EALM+GVKEQL EGPAN  RWDDL GEARR+AVARTHNVVFSQLASIAFNMLECGVDGARVR +VTRKCRESQLGEAQV
Sbjct:  956 RFWHEALMLGVKEQLQEGPANASRWDDLHGEARREAVARTHNVVFSQLASIAFNMLECGVDGARVRSDVTRKCRESQLGEAQV 1038
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BLAST of mRNA_H-elongata_contig150081.3353.1 vs. uniprot
Match: A0A6H5JSR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR7_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.450e-39
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 RFWDEALMMGVKEQLLEGPANV-RWDDLQGEARRDAVARTHNVVFSQLASIAFNMLECGVDGARVRIEVTRKCRESQLGEAQV 246
            RFW EALM+GVKEQL EGPA+  RWDDL GEARR+AVARTHNVVFSQLASIAFNMLECGVDGARVR +VTRKCRESQLGEAQV
Sbjct: 1219 RFWHEALMLGVKEQLQEGPASASRWDDLHGEARREAVARTHNVVFSQLASIAFNMLECGVDGARVRSDVTRKCRESQLGEAQV 1301
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150081.3353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G382_ECTSI9.370e-4089.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSR7_9PHAE4.450e-3987.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150081contigH-elongata_contig150081:573..1114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue1.3e-29
Seed eggNOG ortholog2880.D7G382
EggNOG OGs28J6D@1,2QRIJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_004890.1
Exons2
Model size246
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150081.3353.1prot_H-elongata_contig150081.3353.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150081 573..1093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.8359125-CDS-H-elongata_contig150081:572..7501622929888.8359125-CDS-H-elongata_contig150081:572..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150081 573..750 -
1691679196.3232055-CDS-H-elongata_contig150081:572..7501691679196.3232055-CDS-H-elongata_contig150081:572..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150081 573..750 -
1622929888.8510838-CDS-H-elongata_contig150081:1046..10931622929888.8510838-CDS-H-elongata_contig150081:1046..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150081 1047..1093 -
1691679196.3343015-CDS-H-elongata_contig150081:1046..10931691679196.3343015-CDS-H-elongata_contig150081:1046..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150081 1047..1093 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.8645554-UTR-H-elongata_contig150081:1093..11141622929888.8645554-UTR-H-elongata_contig150081:1093..1114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150081 1094..1114 -
1691679196.3472638-UTR-H-elongata_contig150081:1093..11141691679196.3472638-UTR-H-elongata_contig150081:1093..1114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150081 1094..1114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150081.3353.1

>prot_H-elongata_contig150081.3353.1 ID=prot_H-elongata_contig150081.3353.1|Name=mRNA_H-elongata_contig150081.3353.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MMGVKEQLLEGPANVRWDDLQGEARRDAVARTHNVVFSQLASIAFNMLEC
GVDGARVRIEVTRKCRESQLGEAQV
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mRNA from alignment at H-elongata_contig150081:573..1114-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150081.3353.1 ID=mRNA_H-elongata_contig150081.3353.1|Name=mRNA_H-elongata_contig150081.3353.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=542bp|location=Sequence derived from alignment at H-elongata_contig150081:573..1114- (Himanthalia elongata Himel1 dioecious)
AGATTTTGGGACGAGGCTCTGATGATGGGAGTCAAGGAACAGCTCCTCGA
GGGGCCTGCTAATGTCCGGTGCAGACCCAAAGCGTGTTTTCGCATCTATC
TCCCCCCCCCTCCGCCCTTATTGACAGGACCAGTTGTATGTTAATGTACG
GTGGCGGGAAGGCTGAAGTTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCA
CGCGTTCGATTGAATTCGAGTTTTTTTTCTAGTCTTCTTTCGAAGCCGGT
CGACGCCTGAACGGGGGGGGGGGCTCCACAAGAATCTCGGCAGCTTTTAT
GTAATACTGATTGATTATTGTTTAAAGTACATTACCACATGTGTCGCTGC
AAATCACGTGGCAGGTGGGACGATCTGCAGGGGGAGGCGAGGCGGGATGC
CGTAGCACGGACGCACAACGTGGTGTTCTCTCAGCTGGCGTCGATTGCGT
TCAACATGCTCGAATGCGGCGTCGATGGGGCCCGCGTCCGCATCGAGGTC
ACGCGCAAGTGCAGGGAGAGCCAGCTGGGAGAGGCGCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig150081:573..1114-

>mRNA_H-elongata_contig150081.3353.1 ID=mRNA_H-elongata_contig150081.3353.1|Name=mRNA_H-elongata_contig150081.3353.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig150081:573..1114- (Himanthalia elongata Himel1 dioecious)
ATGATGGGAGTCAAGGAACAGCTCCTCGAGGGGCCTGCTAATGTCCGATG
ATGGGAGTCAAGGAACAGCTCCTCGAGGGGCCTGCTAATGTCCGGTGGGA
CGATCTGCAGGGGGAGGCGAGGCGGGATGCCGTAGCACGGACGCACAACG
TGGTGTTCTCTCAGCTGGCGTCGATTGCGTTCAACATGCTCGAATGCGGC
GTCGATGGGGCCCGCGTCCGCATCGAGGTCACGCGCAAGTGCAGGGAGAG
CCAGCTGGGAGAGGCGCAGGTAGTGGGACGATCTGCAGGGGGAGGCGAGG
CGGGATGCCGTAGCACGGACGCACAACGTGGTGTTCTCTCAGCTGGCGTC
GATTGCGTTCAACATGCTCGAATGCGGCGTCGATGGGGCCCGCGTCCGCA
TCGAGGTCACGCGCAAGTGCAGGGAGAGCCAGCTGGGAGAGGCGCAGGTA
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