mRNA_H-elongata_contig14994.3342.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14994.3342.1
Unique NamemRNA_H-elongata_contig14994.3342.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: D7G8X0_ECTSI (Mitochondrial carrier protein-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X0_ECTSI)

HSP 1 Score: 401 bits (1030), Expect = 1.030e-129
Identity = 211/302 (69.87%), Postives = 247/302 (81.79%), Query Frame = 1
Query:    4 AVAVSVKTELEAAVLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVSTPPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGVSPL 909
            AVA ++   +  A LFPIDTAKTLRQANP+A +GTR+ALA++ RTRG  AIYTG+PTAV GAMPSSALYFGTYEAVK+RL+  A   F  G   GG R  +  G     +HP  RAA HA+AAACGNAASSLIFVPKEYVKQ +QASGM AAG ARETA EIVRRT++EKGV+GLY GY ATLSRN+PSA+IRFS+ EE+K+ +GP RL+S PP YLL GA+AG CASG+TTPFDVLKTRVATGSL+G RG A+NM +IVA++GW+GL+AGFQPRV+MSGLFTAVGF SFE  K +LGVSPL
Sbjct:   28 AVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGP--GGPR--EGEGXXXXXVHPAARAAAHAVAAACGNAASSLIFVPKEYVKQTLQASGMGAAGGARETAKEIVRRTVKEKGVKGLYRGYWATLSRNVPSAIIRFSLYEEIKLFIGPARLMSAPPAYLLAGALAGACASGMTTPFDVLKTRVATGSLEGGRGFAKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKVVLGVSPL 325          
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A6H5JI22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI22_9PHAE)

HSP 1 Score: 399 bits (1026), Expect = 2.920e-127
Identity = 209/302 (69.21%), Postives = 246/302 (81.46%), Query Frame = 1
Query:    4 AVAVSVKTELEAAVLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVSTPPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGVSPL 909
            AVA ++   +  A LFPIDTAKTLRQANP+A +G+R+ALA++ RTRG  AIYTG+PTAV GAMPSSALYFGTYEAVK+RL+  A   F  G   GG R  +  G     +HP  RAA HA+AAACGNAASSLIFVPKEYVKQ +QASGM A G ARETA EI+RRT+REKGVRGLY GY ATLSRN+PSA+IRFS+ EE+K+ +GP RL+S PP YLL GA+AG CASG+TTPFDVLKTRVATGSL+G RG  +NM +IVA++GW+GL+AGFQPRV+MSGLFTAVGF SFE  K++LGVSPL
Sbjct:  156 AVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGSRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGP--GGPR--EGEGXXXXXVHPAARAAAHAVAAACGNAASSLIFVPKEYVKQTLQASGMGAVGGARETAKEIIRRTVREKGVRGLYRGYWATLSRNVPSAIIRFSLYEEIKLFIGPARLMSAPPAYLLAGALAGACASGMTTPFDVLKTRVATGSLEGGRGFVKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKAVLGVSPL 453          
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A836CFD2_9STRA (Mitochondrial carrier protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD2_9STRA)

HSP 1 Score: 277 bits (709), Expect = 4.030e-83
Identity = 158/290 (54.48%), Postives = 204/290 (70.34%), Query Frame = 1
Query:   46 LFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQAS-GMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVSTP----PVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGV 900
            L PIDTAKTLRQ+NPQA +GT +AL+++ +T G  +IY G+  AV G+MPSSALYFG YE+VK+RL  AA R +      GGG            L P  RA VH ++AACGNAASSL+FVPKEYVKQ +QA  G A  G A   A  +V+ TLR++G+RGLY GY ATLSRN+PSA++RF++ EE+K+ L P  L + P    P +LL GAVAG  ASGLTTPFDV+KT+VATG LD + G+ +++  +  E G +GL+ G QPR+++S LFTAVGF SFE  K++L V
Sbjct:   16 LHPIDTAKTLRQSNPQAFKGTIQALSHMLKTHGPGSIYAGVGAAVVGSMPSSALYFGAYESVKARLTRAAGRRW------GGGSAQLV-------LPPGVRAGVHVISAACGNAASSLVFVPKEYVKQSLQAQKGAAMRGQATLNAVALVKATLRQQGIRGLYRGYWATLSRNVPSAILRFTLYEEIKLHLRPN-LANMPGKLSPAFLLAGAVAGAVASGLTTPFDVVKTQVATGRLDRNLGVIKSLTKLGREGGIRGLYVGAQPRMLLSSLFTAVGFGSFEAMKTLLQV 291          
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A7S2STS4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STS4_9STRA)

HSP 1 Score: 226 bits (575), Expect = 2.350e-63
Identity = 139/287 (48.43%), Postives = 176/287 (61.32%), Query Frame = 1
Query:   43 VLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVSTPP-VYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGV 900
            +L P+DT KTLRQ +PQ  + T  AL+   RTRG  A+Y G+  A  GAMPSSALYFG Y+ VK RL            S GG      +GG+   L    R  VH  AA CGNAASSL+FVPKE+VKQ++Q +           A ++V  T++ KGV  +Y GY ATL RNIPSA IRF + EE KILL   RL S  P  + L GAV+G  AS  TTP DV+KT+ ATG+LD SRGL   +  +V   G  GL  G Q R++ S LF+++GF++FE+ KS+LGV
Sbjct:   46 ILHPLDTCKTLRQRHPQQYKSTLAALSSTLRTRGIGALYRGVIPAAIGAMPSSALYFGFYDIVKRRLTRFVANRDQQVNSRGGXXXXXXQGGS--PLESGIRPVVHMTAAVCGNAASSLVFVPKEFVKQQLQTNTKYRGLGG---AFQVVAHTVKTKGVGAVYAGYTATLLRNIPSAAIRFVIYEEAKILL-ESRLGSVGPREFFLAGAVSGLVASSCTTPMDVMKTKFATGALDRSRGLLTCVAEVVRREGAVGLLTGLQGRILWSTLFSSIGFAAFESAKSVLGV 326          
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A4D9D8F7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8F7_9STRA)

HSP 1 Score: 208 bits (529), Expect = 4.830e-57
Identity = 141/294 (47.96%), Postives = 178/294 (60.54%), Query Frame = 1
Query:   43 VLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAA---TRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERL-----VSTPPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGV 900
            VL+PID AKTLRQA P A RG   +L+   R  G  +++ GL  AV G+MPSSALYFG YE VK RL+      T A     S+G       R         + R   HALAAA GN ASSLIFVPKE +KQ++Q     A G A      +    LREKGVRGLY GYRATL RNIPSAV+RF++ EE K+ LG + L     +S P V ++ GA+AG  +S  TTP DV+KTR+A  +    R +   ++ +  + G  GL+AG + RV+ S LFTAVGFSSFE  K++LGV
Sbjct:   21 VLYPIDVAKTLRQAGP-ASRGA--SLSSQARIYGLGSLWAGLTPAVLGSMPSSALYFGVYEYVKRRLVAGIRPRTEASSSVSSDGSKELYQRR------AQVLRRWTAHALAAAAGNTASSLIFVPKEVLKQQLQMY-RNAHGGASLGFPGVFASILREKGVRGLYSGYRATLLRNIPSAVLRFALYEEFKLYLGGQALWGAISLSGPRVAVVAGALAGALSSAATTPLDVIKTRMAINACPPGRDVLGCLLDVAQKEGVPGLYAGVRFRVMYSALFTAVGFSSFEASKALLGV 304          
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: W7TPC7_9STRA (S-adenosylmethionine carrier 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPC7_9STRA)

HSP 1 Score: 208 bits (530), Expect = 6.270e-56
Identity = 140/291 (48.11%), Postives = 180/291 (61.86%), Query Frame = 1
Query:   43 VLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERL-----VSTPPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGV 900
            VL+PID AKTLRQA P A RG   +L+   R  G  +++ GL  AV G+MPSSALYFG YE VK RL+ A  R     E+      D ++      +  + R   HALAAA GN ASSLIFVPKE +KQ++Q     A G A      +    LREKGVRGLY GYRATL RNIPSAV+RF++ EE K+ LG + L     +S P V ++ GA+AG  +S  TTP DV+KTR+A  +    R +   ++ +  + G  GL+AG + RV+ S LFTAVGFSSFE  K++LGV
Sbjct:  128 VLYPIDVAKTLRQAGP-ASRGA--SLSSQARIYGLGSLWAGLTPAVLGSMPSSALYFGVYEYVKRRLV-AGIRPRT--EASSSISSDGSKELYHRRVQVLRRWTAHALAAAAGNTASSLIFVPKEVLKQQLQMY-RNAHGGASLGFPGVFASILREKGVRGLYSGYRATLLRNIPSAVLRFALYEEFKLYLGGQALSGAISLSGPRVAVVAGALAGALSSAATTPLDVIKTRMAINACPPGRDVLGCLLDVAQKEGVPGLYAGVRFRVMYSALFTAVGFSSFEASKALLGV 411          
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A7R9UPS8_DIALT (Hypothetical protein (Fragment) n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UPS8_DIALT)

HSP 1 Score: 203 bits (516), Expect = 2.540e-55
Identity = 117/285 (41.05%), Postives = 168/285 (58.95%), Query Frame = 1
Query:   43 VLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVSTPPVYLLV-GAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSIL 894
            +L P+DT KT+RQAN     GT   +  +W+  G   +Y GL TA+ GAMPSS ++FGTYE +K+RL        L                         RA +H ++AACGNAASSLIFVPKE VKQ++QA+ +A   +      ++V   ++E GVRGLY  Y AT+ RNIP+ V++F + EEL++ L      +T  V  +  GA++G C+S L TP DV+KTR+ATG    + G+ R++V +  E G  GLFAG + R++ + LF+A+G S +E  K +L
Sbjct:   37 LLHPLDTVKTVRQANRAQFPGTFRTIRRIWQQNGPRGLYGGLGTAMVGAMPSSFVFFGTYEFMKARLQALKPDCSLD-----------------------ERARIHVVSAACGNAASSLIFVPKEMVKQRLQAARVAGVSTG---VRQVVSTIVKEHGVRGLYAAYSATIMRNIPTTVLKFLIYEELRLRLAASDESATLRVRSMACGAISGACSSVLMTPLDVVKTRLATGQYAATLGMRRSLVKLATEEGLSGLFAGAKARMVGAALFSAIGLSCYEACKQLL 295          
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A0G4EWL4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EWL4_VITBC)

HSP 1 Score: 188 bits (477), Expect = 3.250e-49
Identity = 132/316 (41.77%), Postives = 177/316 (56.01%), Query Frame = 1
Query:   40 AVLFPIDTAKTLRQANPQ----------AIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGA--ATRAFLPGESEGGGRGDDTRGGAGESLHPVT-RAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARE-TATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPE-------------RLVSTPPVYL-LVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGVS 903
            AVL P+DT K   Q   +          ++  T   +  + + +G  A+Y+G   +V GA+PSSALYFG YE VKSR      A R  L GE           GG      PV  RA V+ALAAA GNA S+++FVPKE+VKQ++QAS   A G+ +  ++ +I+   ++E G++G+Y GYRATL RN+PS+V+RFSV EELK L+                R  +  PVYL L GAVA       TTP D +KT +AT  L     + +N+ ++  E G   L AG + RV+ SGLF+AVG  SFE FKS L VS
Sbjct:   30 AVLHPVDTVKVYIQIERRREHTGHHHRPSLGDTLRTMRAIRKEKGIGALYSGFLPSVLGALPSSALYFGAYELVKSRATSVLEARRRRLSGE-----------GGCQNGPLPVQQRAFVNALAAASGNAVSAMVFVPKEFVKQQLQASKSGAIGAGQILSSVDILWAAVKESGIKGVYRGYRATLVRNVPSSVLRFSVFEELKRLIVSTCVTPSSQLPSFSLRSAAYLPVYLFLAGAVAXXXXXXXTTPMDNVKTNIATRQLSQDMSIGQNLRTLWKEQGMSSLLAGMKTRVLYSGLFSAVGLGSFEAFKSALRVS 334          
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A2V3J0Y3_9FLOR (Protein MITOFERRINLIKE 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0Y3_9FLOR)

HSP 1 Score: 186 bits (472), Expect = 4.590e-49
Identity = 116/287 (40.42%), Postives = 162/287 (56.45%), Query Frame = 1
Query:   43 VLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALAIYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVS-----TPPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKS 888
            +L P+DT KT+RQA+P   RG    L  + RTRG  A+Y G+  A+ G+  SSALYFG YE VK  L   +  +F                       P TR  + AL+AACGN ASS++FVPKE VKQ++Q++     G+    A  +    L   G+ GLY GY+ATL RNIPS ++RF++ EE K+ +   +  +     T P  +  G++AG  +S  TTP DVLKTR ATG++     +   +  IV  +G  GLF G +PR++ + LF A+GFSS+E  KS
Sbjct:   36 LLHPLDTVKTVRQADPTHFRGMAPTLLKIIRTRGPFALYAGIVPALIGSAFSSALYFGAYEMVKGALAQMSPYSFQK---------------------PRTRIPLTALSAACGNVASSVLFVPKEVVKQRMQSA--VDPGNFFGAAKNV----LAASGISGLYRGYKATLLRNIPSTMLRFAIYEEAKLAIRRLKRENSDKPLTFPEVIAAGSIAGVASSACTTPMDVLKTRFATGAIKPGTAILPAIRDIVGRDGVPGLFVGIRPRIVWAALFAAIGFSSYEVCKS 295          
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Match: A0A448Z9E8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9E8_9STRA)

HSP 1 Score: 189 bits (479), Expect = 8.150e-49
Identity = 131/303 (43.23%), Postives = 169/303 (55.78%), Query Frame = 1
Query:   40 AVLFPIDTAKTLRQANPQAIRGTREALAYVWRTRGALA-IYTGLPTAVFGAMPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHPVTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEIVRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKI--LLGPERLVSTPPVY--------LLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAENGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGVSPLTS 915
            AVL+PID+AKTLRQ+NP A    R+AL  + +++ AL  +Y G+  A  GA+PSSALYFG YE+ K  L     +  +  ++      DD R           R  VH LAAA GN  SS +FVPKE +KQ++Q     A     +    IVR    + G+ GLY GY ATL RNIPSA IRF + EELK      P     + P           L GAVAG  +S   TP DV+KTR+ATGS     G+   M+ +V E GW+GL+AG   RV+ SG F+A+GF +FE  K  LGVS  +S
Sbjct:  131 AVLYPIDSAKTLRQSNPTAYSSVRDALWTMLKSKNALRRVYRGILPAALGAIPSSALYFGAYESSKVTL-----KRLVFQKNHKNVDSDDYR----------ARLFVHGLAAASGNVISSFVFVPKEVIKQQLQIRASEATTGTVQAIGSIVR----QNGISGLYAGYGATLLRNIPSATIRFVLYEELKRKWATAPSGESGSSPQTQKLRAAGTFLAGAVAGATSSFAMTPIDVVKTRMATGSCP--LGVRSCMLHVVGEVGWKGLYAGAGSRVLWSGAFSAIGFGTFELVKGYLGVSSTSS 412          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14994.3342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8X0_ECTSI1.030e-12969.87Mitochondrial carrier protein-like n=1 Tax=Ectocar... [more]
A0A6H5JI22_9PHAE2.920e-12769.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFD2_9STRA4.030e-8354.48Mitochondrial carrier protein-like protein n=1 Tax... [more]
A0A7S2STS4_9STRA2.350e-6348.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D8F7_9STRA4.830e-5747.96Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TPC7_9STRA6.270e-5648.11S-adenosylmethionine carrier 1 n=1 Tax=Nannochloro... [more]
A0A7R9UPS8_DIALT2.540e-5541.05Hypothetical protein (Fragment) n=3 Tax=Diacronema... [more]
A0A0G4EWL4_VITBC3.250e-4941.77Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A2V3J0Y3_9FLOR4.590e-4940.42Protein MITOFERRINLIKE 1, chloroplastic n=1 Tax=Gr... [more]
A0A448Z9E8_9STRA8.150e-4943.23Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14994contigH-elongata_contig14994:2741..7796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.0
Seed ortholog evalue8e-87
Seed eggNOG ortholog2880.D7G8X0
KEGG koko:K15111,ko:K15113
KEGG TC2.A.29.18,2.A.29.5
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006839,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.S-adenosyl-L-methionine transmembrane transport
EggNOG OGsKOG0768@1,KOG0768@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons6
Model size2529
Cds size795
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14994.3342.1prot_H-elongata_contig14994.3342.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14994 4286..7332 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.6314852-UTR-H-elongata_contig14994:2740..42851622929887.6314852-UTR-H-elongata_contig14994:2740..4285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14994 2741..4285 -
1691679195.9265738-UTR-H-elongata_contig14994:2740..42851691679195.9265738-UTR-H-elongata_contig14994:2740..4285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14994 2741..4285 -
1622929887.7193968-UTR-H-elongata_contig14994:7332..73871622929887.7193968-UTR-H-elongata_contig14994:7332..7387Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14994 7333..7387 -
1691679195.9890893-UTR-H-elongata_contig14994:7332..73871691679195.9890893-UTR-H-elongata_contig14994:7332..7387Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14994 7333..7387 -
1622929887.7308943-UTR-H-elongata_contig14994:7662..77961622929887.7308943-UTR-H-elongata_contig14994:7662..7796Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14994 7663..7796 -
1691679195.998159-UTR-H-elongata_contig14994:7662..77961691679195.998159-UTR-H-elongata_contig14994:7662..7796Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14994 7663..7796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.6440625-CDS-H-elongata_contig14994:4285..44581622929887.6440625-CDS-H-elongata_contig14994:4285..4458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 4286..4458 -
1691679195.9375327-CDS-H-elongata_contig14994:4285..44581691679195.9375327-CDS-H-elongata_contig14994:4285..4458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 4286..4458 -
1622929887.661199-CDS-H-elongata_contig14994:4803..48911622929887.661199-CDS-H-elongata_contig14994:4803..4891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 4804..4891 -
1691679195.9489312-CDS-H-elongata_contig14994:4803..48911691679195.9489312-CDS-H-elongata_contig14994:4803..4891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 4804..4891 -
1622929887.680929-CDS-H-elongata_contig14994:5522..56371622929887.680929-CDS-H-elongata_contig14994:5522..5637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 5523..5637 -
1691679195.958923-CDS-H-elongata_contig14994:5522..56371691679195.958923-CDS-H-elongata_contig14994:5522..5637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 5523..5637 -
1622929887.6917894-CDS-H-elongata_contig14994:5844..60141622929887.6917894-CDS-H-elongata_contig14994:5844..6014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 5845..6014 -
1691679195.9689891-CDS-H-elongata_contig14994:5844..60141691679195.9689891-CDS-H-elongata_contig14994:5844..6014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 5845..6014 -
1622929887.7065978-CDS-H-elongata_contig14994:7083..73321622929887.7065978-CDS-H-elongata_contig14994:7083..7332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 7084..7332 -
1691679195.979059-CDS-H-elongata_contig14994:7083..73321691679195.979059-CDS-H-elongata_contig14994:7083..7332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14994 7084..7332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14994.3342.1

>prot_H-elongata_contig14994.3342.1 ID=prot_H-elongata_contig14994.3342.1|Name=mRNA_H-elongata_contig14994.3342.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
MPSSALYFGTYEAVKSRLLGAATRAFLPGESEGGGRGDDTRGGAGESLHP
VTRAAVHALAAACGNAASSLIFVPKEYVKQKIQASGMAAAGSARETATEI
VRRTLREKGVRGLYCGYRATLSRNIPSAVIRFSVNEELKILLGPERLVST
PPVYLLVGAVAGGCASGLTTPFDVLKTRVATGSLDGSRGLARNMVSIVAE
NGWQGLFAGFQPRVIMSGLFTAVGFSSFETFKSILGVSPLTSAERKHEKR
NASLMKTPSGTTRR*
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mRNA from alignment at H-elongata_contig14994:2741..7796-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14994.3342.1 ID=mRNA_H-elongata_contig14994.3342.1|Name=mRNA_H-elongata_contig14994.3342.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5056bp|location=Sequence derived from alignment at H-elongata_contig14994:2741..7796- (Himanthalia elongata Himel1 dioecious)
TTTGCGGTTGCGGTCTCCGTGAAAACTGAACTCGAGGCAGCCGTTCTGTT CCCGATCGATACGGCCAAGACACTGCGCCAGGCAAATCCTCAAGCAATCC GCGGCACGCGCGAGGCGCTGGCGTACGTGTGGCGGTGAGCTCCAACGGCG CGACAAAAATACGCCGCTGAAATCCCTCCTTACAATATCTAGGAATAGAT GCGATGCGCGCGAGATAAAGTGATATTCCTCTTCGGATTTTAACGAGATA TTTTCCCATTTGTGCTACGCTAGAGACCACCGGTGTCGACCTCAGGGGCC GAGACCCGTTTAAATGGGCGAAGAAGGTTCTCGTAGAAGAGGTTTACAAT GCGGTAAAAATGTGTCTGCAGATCGGCCCCTCCCTTCCCACACCTCCGGC TTACCCCAGAACTCGAGGTGCCCTGGCTATCTACACAGGCCTTCCGACAG CAGTGTTTGGCGCCATGCCATCGAGCGCCCTCTATTTCGGAACCTACGAG GCAGTGAAATCGCGCCTTCTGGGCGCTGCGACACGGGCGTTCCTCCCGGG CGAGAGCGAAGGCGGGGGCAGGGGCGACGACACGAGAGGAGGGGCGGGGG AAAGCCTGCACCCGGTGACGAGGGCGGCGGTTCACGCGTTGGCGGCGGCT TGCGGAAACGCGGCGTCTAGTCTGATATTCGTGCCAAAGGAGTACGTGAA GCAGAAGATACAGGTGCGGTAGAAGCACGGTCGACATCGCCTGCTCGTAG AGGCCTCGCTCGCGTGTCACGGACTCTTGAGATGCCTATACAAAGTGGAG AGTTGAATAGGCAATGAGAGAGAAAAGGGTAAGGAGGAAGAGACCGGAGG TGGGTCTCTTGGAGCGATGAGTCTTGGATGATCGGCGCGCGCGCGCATAT GCGTGTGCGTGGTTGTCTTCGGGAGTGAGTGAGTGAGTGAGTAAGTGCTA TGGGCGACAGTCGCTTCTTGCCACCTCGCGATCGACCTCGCTTTCCGATG ATACGCTGTAGGACCTGGTGGTGTGCCGTACCGTGTTGTGCGGAGCTTGT TGTAGTGCTCTTGGCGTAGGATCCATGTAATCTATCCATCTAACCGTCCA GGAGAGCTTCGTCTACGTCGGCTCTCACCATTCGGTCCTTCAGGGCAAAC AGAATGGTGGGACGGTCGCCAAGTCGTATCCTCTACTTATTGGTGCGAGG GTTCGGCGGTATAATTTTACCGCGTAGCCGTTATCGCCTACGGCTGTACC AGAGAGATTAACGCACAATGTGGTACGGCGTTGCTCGTGGAGCCACAGGA CGGTATATGCCCTGGAAACCGTGTCCACCGCTCACGGTCTGCGGACTAAA AAAATCATACTATATGCTTTATAATGAATGCTGCATACTCCCTGTTTAGC TGACCACAAGCAGAAGGAAACACCACGAGCAGAAGGAAACCAAATACGGT TGATCCTTCTGCTAAATGTGTGACCATACATACTACACGCGGGGCCAAAA TATTACACAGGATACAACTTATACTGAATACTCCAGTACATACGATACAC CTTATACTATACTATATTATACTATACTATAATATACTATACTATACTAT ACTATACACCATATAATGTGTATTTAGCCTTGACTACTCACGGGGGGGAC TGAGTCGTCGACTGGAAATGCGCAAACGGTGTTTTAGACCCTCTCCGGCC GATTGCCTTATCTAAAGCACCTGCTGGTTAATTCTACCCCGCGCCGTTTG GCCTCCGCCCCAACTTCGCAACGGGAAGCTAGGCTTCGGGGATGGCTGCT GCGGGGAGCGCGCGGGAAACGGCGACGGAGATCGTTCGTCGAACGCTGCG AGAAAAGGGGGTGCGAGGTCTCTACTGCGGCTACAGGGCGACGCTCTCCC GGAACATTCCCAGCGCGGTCATCCGATTTTCGGTAAACGAGGAACTCAAG ATGTGAGAATATAACCTGCCCATGATGCCCCCCCCCCCCCTCCCATCTTC CCTTTTGACACTTCCCACAGAAAGCCGCATAATGTGCGGGACAAACGAGC GGCGCCTGGGCCCCAAAATTCATAATTATCCCGGCTGAGAGAAAAAAAAT CCGCCGTCGATTCATTTTATCGTTTCGCAAACCTTTTTTTCCACTCTGCC GTCGTGCAGATTGCTGGGGCCGGAGCGCCTTGTCTCGACGCCCCCGGTGT ATCTTTTAGTGGGAGCTGTTGCTGGGGGCTGTGCTAGCGGGTTGACCACG CCATTCGACGTGCTCAAGACCAGGGTGGGTTTAAAAAACGTTTCGTCGGA AAAGCGGAAGAGAGGGGAGGTGGATGAATGGGCAAGCGGGTATCCCGGCG AATTGTTTATGTGTGTGTATGTATATGTATTTATCAAATTGCATAAAACC GCGCAATCCGGCCCTTTCATGCTAGTCATTCTAGGCTACAATACTCACAT TGGTCCTTCCTATGGGGGATAAATTATAAGTGTGTCTATGTGTGTGTGTC TGTTTATTACGTGTTTTCAGGTTAATGCAGGCGGAAAAAGTGGATTTCGA GTATTGAACGCGGGGGGGTCGTTCTCGCGTGATTTGGAGTCCGCGATTTT TCGCCTTCGTCAGACGGCCGCGCACGGCCCTGTCGTTGGGCGTCGATTCA TAAGCTATCTTTCTGCTTATATAATAATATATTATGTCATCATATCTTAT TATATATATATATATATATATATATATAATCTTATCTATCCCTGCTTTGA AACAAAACGAAGTCAACCGGGAAGCCTCCGGGGAATCGTGGTGTACCGCT TTCCCAGCGGTAACGCGCGCGCGCTTTGGTCCTTAAATCCAGACGTACGT GTTTCTTCTCGTGTGTACGCCGCATCGATTGGCTTCTTCGGTGCTGCTTT CTCAGGTTGCCACGGGATCGTTGGATGGCAGCAGGGGCTTAGCGCGCAAC ATGGTATCCATCGTTGCCGAGAACGGGTGGCAAGGGCTATTTGGTGAGGC GGATGGGCTGACCGCATCTCCTACCGTGCCTGAGTTTAAAACGAAATAAT CGCAGCGTTTGTCAAAATTGCTTGAGCACACACTAAGTGGTACTGCAGAT AGCTCGTCTTACGGATAATAGTTTTAAAGGCATAGAAGCACAGATGGAGG CTCTGGCAGGTAGGCATGTATCGAAGCTCACCCCAAACCGCTCTCGGCGT ATCGCAGCTGGGATCACCCGGCATGGTGAAAGCAATCGTTTTGGAGAGCT CGCTAAAAGAAGTTGGTGATCGACCATCGTACATCCCCCCCGCCCCGCAC ATCACCCTCACCCCTCCCCTCGCGTAACGCCTCTTCAGCGGGTTTCCAAC CGCGAGTGATTATGTCGGGCCTCTTCACGGCCGTCGGCTTCAGCTCGTTC GAGACGTTCAAGTCGATCCTTGGGGTGTCTCCGTTAACCTCGGCCGAGAG GAAGCACGAGAAACGAAATGCATCTCTAATGAAAACCCCTTCGGGCACCA CGAGGAGATGAACGAAGAAATGAAATACTGTATGCGTATGTAGGCGTGTC GAGTGATATGGATCATAGAAAGAGTGTGGTTCGTCTTAGGCATCAATGGT AAGATACACGGATGTTGGAGTTCGCCTTGTCTCGTTATTGCCCGTAATTG GGTGGGTTGATCGCTGAGCCGTTCGGGTAGTTACACTCTATGCTTGACGA ACACTAGGTCACAGTACAGTAGTAGTTAGGACTCCAGGAGCTTCATCTTA CATCACATTTTTATATCGTGCGAAGGTGATGAACATGATAAAATACTACG GCGGCTAAGAAGGCGACGCTGACACAAAATGTGAGATGTCATACTTGTAG AGATGAGAGAAAATTGGTGGCAAAAGCTCAAAAGGCGGTCGAGAGGTATA CTATCCCCCTCCTCCGCGCTTAACCCTTTTGGAACTGGATTTTAAGTTTT ATGTTGAATTTAATGTGTAAAAAACAGATCCAAGTTCCATAGGGGTTAAA GAACACGTTCAGCGTAGAATGCTATTAGTTTGCTAGTGATATGGACGGCT AGGAACTACCACAAGTAACACTATCCTGCCCTGCGAGTGTGCGTTCATCT GTACATATCGTAGAGGAGCAGCTAGCTTGTTCATGTTATGGTCACTGGGG TAACTGATGTTACGCACACGTGGGCAGTGTCCGCAGTTTCCATTCCATTT CACGCCCTCCGTATCATAATGACGAAGTGCATTGACCCGCGGCAGATGCC GCTGACGCGTCGAAGCAACTTGGAGGAGTTTCTAGACTACGCTTGTCTGC AGCCTAGTCGGCGAAGTGATTAGGTTGTTGGTTGTGTTTGTAACACTCTC GAGATTTGACGAGTTGCTACTTAATGGCCGCCAAGACACCCTGTTGCGGT GTTGCGGTTCACAAAAATAGGATATGAATACTTTGTACGACGCACGAGCT ACGGTGTAATTGGCTCATACCACTACTGTTTAGAACAGTAATGTCAGTTC CGGCGAATCGAAAGTATTCCATACGTGGAATCCGGTATTTCAGGCGATTC CAGTTCCATACGTGGAATTCCGGCAGCACCGGGGGCCCCGAAAAATAGCG GGGGTACCGGGGGGCCCGTAACAGCAGTTTCTACAGTTTTTGCGCGTTTT CGCACAGCTATTTTCCTCCAGACTCAGGCATACATGTGTGGGCATACGGC TCCACTGCCGTGGCGCCAGGCTTGCGTCGTGTGTTGTTTCTTTCTCTTGC TAGTCCAGCTAAAACACATGATACTTGAAACTGGAATATTTTTTCATTTT TTTTTCATGTTTTTATGTTTTATTAAATTGAATGTTGTACACTCCGTATG TTGTGCTGTGTGCTGTGAGCTGAGTCTTTACATGCGGGCCCCCTGAAATA GGGAGGGGTACCAATTCTGCGGGGCCCCGATGGAATTCCGTGGGAAAAAA AAAAATCCGGCCGGCTGAAAATAATTCCATTGAATTCCGTGGACGCCGGA ACTGACATCACTGGTTTAGAATAGCTATCGCACATTTCAACGAGCATTTT TTCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig14994:2741..7796-

>mRNA_H-elongata_contig14994.3342.1 ID=mRNA_H-elongata_contig14994.3342.1|Name=mRNA_H-elongata_contig14994.3342.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig14994:2741..7796- (Himanthalia elongata Himel1 dioecious)
ATGCCATCGAGCGCCCTCTATTTCGGAACCTACGAGGCAGTGAAATCGCG
CCTTCTGGGCGCTGCGACACGGGCGTTCCTCCCGGGCGAGAGCGAAGGCG
GGGGCAGGGGCGACGACACGAGAGGAGGGGCGGGGGAAAGCCTGCACCCG
GTGACGAGGGCGGCGGTTCACGCGTTGGCGGCGGCTTGCGGAAACGCGGC
GTCTAGTCTGATATTCGTGCCAAAGGAGTACGTGAAGCAGAAGATACAGA
TGCCATCGAGCGCCCTCTATTTCGGAACCTACGAGGCAGTGAAATCGCGC
CTTCTGGGCGCTGCGACACGGGCGTTCCTCCCGGGCGAGAGCGAAGGCGG
GGGCAGGGGCGACGACACGAGAGGAGGGGCGGGGGAAAGCCTGCACCCGG
TGACGAGGGCGGCGGTTCACGCGTTGGCGGCGGCTTGCGGAAACGCGGCG
TCTAGTCTGATATTCGTGCCAAAGGAGTACGTGAAGCAGAAGATACAGGC
TTCGGGGATGGCTGCTGCGGGGAGCGCGCGGGAAACGGCGACGGAGATCG
TTCGTCGAACGCTGCGAGAAAAGGGGGTGCGAGGTCTCTACTGCGGCTAC
AGGGCGACGCTCTCCCGGAACATTCCCAGCGCGGTCATCCGATTTTCGGT
AAACGAGGAACTCAAGATGCTTCGGGGATGGCTGCTGCGGGGAGCGCGCG
GGAAACGGCGACGGAGATCGTTCGTCGAACGCTGCGAGAAAAGGGGGTGC
GAGGTCTCTACTGCGGCTACAGGGCGACGCTCTCCCGGAACATTCCCAGC
GCGGTCATCCGATTTTCGGTAAACGAGGAACTCAAGATATTGCTGGGGCC
GGAGCGCCTTGTCTCGACGCCCCCGGTGTATCTTTTAGTGGGAGCTGTTG
CTGGGGGCTGTGCTAGCGGGTTGACCACGCCATTCGACGTGCTCAAGACC
AGGATTGCTGGGGCCGGAGCGCCTTGTCTCGACGCCCCCGGTGTATCTTT
TAGTGGGAGCTGTTGCTGGGGGCTGTGCTAGCGGGTTGACCACGCCATTC
GACGTGCTCAAGACCAGGGTTGCCACGGGATCGTTGGATGGCAGCAGGGG
CTTAGCGCGCAACATGGTATCCATCGTTGCCGAGAACGGGTGGCAAGGGC
TATTTGGTTGCCACGGGATCGTTGGATGGCAGCAGGGGCTTAGCGCGCAA
CATGGTATCCATCGTTGCCGAGAACGGGTGGCAAGGGCTATTTGCGGGTT
TCCAACCGCGAGTGATTATGTCGGGCCTCTTCACGGCCGTCGGCTTCAGC
TCGTTCGAGACGTTCAAGTCGATCCTTGGGGTGTCTCCGTTAACCTCGGC
CGAGAGGAAGCACGAGAAACGAAATGCATCTCTAATGAAAACCCCTTCGG
GCACCACGAGGAGATGACGGGTTTCCAACCGCGAGTGATTATGTCGGGCC
TCTTCACGGCCGTCGGCTTCAGCTCGTTCGAGACGTTCAAGTCGATCCTT
GGGGTGTCTCCGTTAACCTCGGCCGAGAGGAAGCACGAGAAACGAAATGC
ATCTCTAATGAAAACCCCTTCGGGCACCACGAGGAGATGA
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