mRNA_H-elongata_contig149848.3339.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149848.3339.1
Unique NamemRNA_H-elongata_contig149848.3339.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Match: D7FKX1_ECTSI (MTS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKX1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.810e-25
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    4 ASRAVYSMHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLIR 177
            A+  VYSMHK+STRKHLLKKA +WGVD+ VLAQLRFDIPATYKFHKR S+DVEVDLIR
Sbjct:  147 AAPTVYSMHKTSTRKHLLKKAEEWGVDITVLAQLRFDIPATYKFHKRRSMDVEVDLIR 204
[Close]
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Match: A7RZY5_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RZY5_NEMVE)

HSP 1 Score: 94.4 bits (233), Expect = 3.850e-24
Identity = 40/60 (66.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 VASRAVYSMHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLIRF 180
            ++++AVYS+HK+STR H+ KKA++WGV++ VLAQLR+D+P +YKFHK+ASVD+EVDLIRF
Sbjct:   13 LSTKAVYSLHKTSTRPHITKKATEWGVEMEVLAQLRYDLPKSYKFHKKASVDIEVDLIRF 72
[Close]
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Match: A0A7S0CVM8_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CVM8_9EUKA)

HSP 1 Score: 94.0 bits (232), Expect = 1.100e-22
Identity = 41/56 (73.21%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:   10 RAVYSMHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLIR 177
            ++VYS+HK+STRKH+LKKAS+WGVDV V+A+LRFDIP  YKFH++ SVD+EVDLIR
Sbjct:   56 KSVYSLHKTSTRKHILKKASEWGVDVKVIAELRFDIPNMYKFHRKKSVDIEVDLIR 111
[Close]
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Match: UPI00138FFE02 (methyltransferase-like protein 5 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FFE02)

HSP 1 Score: 94.4 bits (233), Expect = 1.310e-22
Identity = 40/60 (66.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 VASRAVYSMHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLIRF 180
            ++++AVYS+HK+STR H+ KKA++WGV++ VLAQLR+D+P +YKFHK+ASVD+EVDLIRF
Sbjct:  149 LSTKAVYSLHKTSTRPHITKKATEWGVEMEVLAQLRYDLPKSYKFHKKASVDIEVDLIRF 208
[Close]
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Match: A0A7S2VUI6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2VUI6_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 1.680e-22
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 VASRAVYSMHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLIRF 180
            + SR VYS+HK+STRKH+LK+A QWGVD  V+AQLRFDIP  YKFH+  SVDVEVDLIRF
Sbjct:  125 LTSRTVYSLHKTSTRKHILKRALQWGVDSKVIAQLRFDIPQMYKFHREKSVDVEVDLIRF 184
[Close]
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Match: A0A7S3Z839_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z839_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 2.730e-22
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 VASRAVYSMHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLIRF 180
            + S AVYS+HK+STRKH+LK+A+QWGV+  V+A++RFDIP  YKFH++ SVD+EVD+ RF
Sbjct:    7 LTSHAVYSLHKTSTRKHILKRAAQWGVEAKVIAEMRFDIPQMYKFHRKKSVDIEVDVFRF 66
[Close]
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Match: A0A674JDG0_TERCA (Methyltransferase like 5 n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=A0A674JDG0_TERCA)

HSP 1 Score: 90.1 bits (222), Expect = 5.500e-22
Identity = 39/60 (65.00%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 VASRAVYSMHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLIRF 180
            +A  AVYS+HK+STRKH+ KKA +W V + V+A+LR+D+PA+YKFHK++SVD+EVDLIRF
Sbjct:   49 MAQTAVYSLHKTSTRKHIQKKADEWKVKMEVIAELRYDLPASYKFHKKSSVDIEVDLIRF 108
[Close]
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Match: A0A7S2XGX5_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XGX5_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 1.520e-21
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 VASRAVYSMHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLIRF 180
            + S AVYS+HK+STRKH+LK+A+QWGV+  V+A++RFDIP  YKFH++ SVD+EVD+ RF
Sbjct:   48 LTSHAVYSLHKTSTRKHILKRAAQWGVEAEVIAEMRFDIPQMYKFHRKKSVDIEVDVFRF 107
[Close]
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Match: A0A6L5CL99_9INSE (MTS domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CL99_9INSE)

HSP 1 Score: 91.7 bits (226), Expect = 1.730e-21
Identity = 39/60 (65.00%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 VASRAVYSMHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLIRF 180
            +A+ AVYS+HK+STR+H+L KA QWGV+  V+A+LR+D+PATY+FHK+ SVD+EVD IRF
Sbjct:  147 LATTAVYSLHKTSTRQHMLTKAKQWGVEAKVVAELRYDLPATYRFHKKQSVDIEVDFIRF 206
[Close]
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Match: A0A671DTF2_RHIFE (Methyltransferase like 5 n=42 Tax=Boreoeutheria TaxID=1437010 RepID=A0A671DTF2_RHIFE)

HSP 1 Score: 88.6 bits (218), Expect = 1.940e-21
Identity = 37/60 (61.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 VASRAVYSMHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLIRF 180
            +A  AVYS+HKSSTR+H+ KKA++W + + ++A+LR+D+PA+YKFHK+ SVD+EVDLIRF
Sbjct:   49 MARTAVYSLHKSSTREHIQKKAAEWKIKIDIIAELRYDLPASYKFHKKKSVDIEVDLIRF 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149848.3339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKX1_ECTSI1.810e-2582.76MTS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A7RZY5_NEMVE3.850e-2466.67Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
A0A7S0CVM8_9EUKA1.100e-2273.21Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
UPI00138FFE021.310e-2266.67methyltransferase-like protein 5 n=1 Tax=Nematoste... [more]
A0A7S2VUI6_9EUKA1.680e-2273.33Hypothetical protein (Fragment) n=1 Tax=Norrisiell... [more]
A0A7S3Z839_9EUKA2.730e-2263.33Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A674JDG0_TERCA5.500e-2265.00Methyltransferase like 5 n=1 Tax=Terrapene carolin... [more]
A0A7S2XGX5_9EUKA1.520e-2163.33Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A6L5CL99_9INSE1.730e-2165.00MTS domain-containing protein n=1 Tax=Ephemera dan... [more]
A0A671DTF2_RHIFE1.940e-2161.67Methyltransferase like 5 n=42 Tax=Boreoeutheria Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149848contigH-elongata_contig149848:659..1136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.5e-18
Seed eggNOG ortholog2880.D7FKX1
Preferred nameMETTL5
KEGG koko:K07579
EggNOG free text desc.DNA repair
EggNOG OGsCOG2263@1,KOG3420@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size180
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149848.3339.1prot_H-elongata_contig149848.3339.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149848 659..1112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.3491313-CDS-H-elongata_contig149848:658..7901622929887.3491313-CDS-H-elongata_contig149848:658..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149848 659..790 -
1691679195.8144624-CDS-H-elongata_contig149848:658..7901691679195.8144624-CDS-H-elongata_contig149848:658..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149848 659..790 -
1622929887.3601348-CDS-H-elongata_contig149848:1088..11121622929887.3601348-CDS-H-elongata_contig149848:1088..1112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149848 1089..1112 -
1691679195.8284614-CDS-H-elongata_contig149848:1088..11121691679195.8284614-CDS-H-elongata_contig149848:1088..1112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149848 1089..1112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.3732324-UTR-H-elongata_contig149848:1112..11361622929887.3732324-UTR-H-elongata_contig149848:1112..1136Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149848 1113..1136 -
1691679195.8368402-UTR-H-elongata_contig149848:1112..11361691679195.8368402-UTR-H-elongata_contig149848:1112..1136Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149848 1113..1136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149848.3339.1

>prot_H-elongata_contig149848.3339.1 ID=prot_H-elongata_contig149848.3339.1|Name=mRNA_H-elongata_contig149848.3339.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MHKSSTRKHLLKKASQWGVDVAVLAQLRFDIPATYKFHKRASVDVEVDLI
RF
back to top

mRNA from alignment at H-elongata_contig149848:659..1136-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149848.3339.1 ID=mRNA_H-elongata_contig149848.3339.1|Name=mRNA_H-elongata_contig149848.3339.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=478bp|location=Sequence derived from alignment at H-elongata_contig149848:659..1136- (Himanthalia elongata Himel1 dioecious)
GTAGCATCAAGAGCAGTGTATTCCATGCACAAGTCGTCCACTCGGAAGGT
GAGGAACCGAATGGATTGAACGGAGTGATCTCAAAATGAACCCACGAAAT
GCTCCGAGGCGTGTTTTTATAGGTGCAACGAATGTGACCTTTATACGCGA
CATGTATGTGCTGCTCTCGTTAAATCGCTACAATCCCGTGATGATGTGAT
GATAGGGTCAATACACCGGGGTGATGATAGGAGTGATGCTGCCTTGCTCC
TCGAGGTGTTACGGCATGAAGCTATTGTCCAATGGCCACGTTCTACTCTG
TGACTTTACCCCCCGTTGGTCTGTCGCCGCCTTCTGTCAACTCCAGCACC
TGCTCAAGAAGGCCTCCCAATGGGGAGTAGATGTTGCTGTCCTGGCCCAG
CTTCGCTTTGACATCCCTGCCACGTACAAGTTCCACAAGCGGGCTTCTGT
GGATGTCGAGGTTGATTTGATCCGTTTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig149848:659..1136-

>mRNA_H-elongata_contig149848.3339.1 ID=mRNA_H-elongata_contig149848.3339.1|Name=mRNA_H-elongata_contig149848.3339.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig149848:659..1136- (Himanthalia elongata Himel1 dioecious)
ATGCACAAGTCGTCCACTCGGAAGATGCACAAGTCGTCCACTCGGAAGCA
CCTGCTCAAGAAGGCCTCCCAATGGGGAGTAGATGTTGCTGTCCTGGCCC
AGCTTCGCTTTGACATCCCTGCCACGTACAAGTTCCACAAGCGGGCTTCT
GTGGATGTCGAGGTTGATTTGATCCGTTTTCACCTGCTCAAGAAGGCCTC
CCAATGGGGAGTAGATGTTGCTGTCCTGGCCCAGCTTCGCTTTGACATCC
CTGCCACGTACAAGTTCCACAAGCGGGCTTCTGTGGATGTCGAGGTTGAT
TTGATCCGTTTT
back to top