mRNA_H-elongata_contig149747.3328.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149747.3328.1
Unique NamemRNA_H-elongata_contig149747.3328.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Match: D7G7W1_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7W1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.190e-20
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 CSMALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEGVCLEECR 159
            C+MALVHSR+RRV+YG R+ + GCLGS+ MLHTL++LNH YRVFEGVC +ECR
Sbjct:  297 CAMALVHSRVRRVIYGVRDTERGCLGSVTMLHTLTSLNHNYRVFEGVCADECR 349
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BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Match: E2B9Q0_HARSA (tRNA-specific adenosine deaminase-like protein 3 n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2B9Q0_HARSA)

HSP 1 Score: 72.8 bits (177), Expect = 1.080e-13
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 CSMALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEGVCLEECR 159
            C+MAL+HSR+ RV YGA NP+ G LGS  +LHT+  LNH+YRV+ G+   ECR
Sbjct:  363 CAMALLHSRVARVFYGAANPRVGVLGSRAILHTMPGLNHRYRVWSGILERECR 415
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BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Match: UPI0013F2132B (probable inactive tRNA-specific adenosine deaminase-like protein 3 n=1 Tax=Odontomachus brunneus TaxID=486640 RepID=UPI0013F2132B)

HSP 1 Score: 72.0 bits (175), Expect = 2.010e-13
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 CSMALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEGVCLEECR 159
            C+MAL+HSR+ R+ YGA NP+ G LGS  +LHT   LNH+YRV+ G+  +ECR
Sbjct:  361 CAMALLHSRVARIFYGATNPRVGVLGSRAVLHTTPGLNHRYRVWSGILEQECR 413
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BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Match: A0A6P3Y1D6_DINQU (probable inactive tRNA-specific adenosine deaminase-like protein 3 n=1 Tax=Dinoponera quadriceps TaxID=609295 RepID=A0A6P3Y1D6_DINQU)

HSP 1 Score: 72.0 bits (175), Expect = 2.050e-13
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 CSMALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEGVCLEECR 159
            C+MAL+HSR+ R+ YGA NP+ G LGS+ +LHT+  LNH+YRV+ G+   EC+
Sbjct:  361 CAMALLHSRVSRIFYGAANPRIGVLGSVAVLHTMPGLNHRYRVWSGILERECQ 413
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BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Match: UPI0009959BDE (probable inactive tRNA-specific adenosine deaminase-like protein 3 n=1 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI0009959BDE)

HSP 1 Score: 68.9 bits (167), Expect = 2.480e-12
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 CSMALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEGVCLEECR 159
            C+MAL+HSR+ R+ YGA NP  G LG+  +LHTL  LNH+Y+V+ G+   EC+
Sbjct:  358 CAMALLHSRVARIFYGAANPSAGVLGTRALLHTLPGLNHRYQVWSGILERECQ 410
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BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Match: A0A1V9YNE8_9STRA (Inactive tRNA-specific adenosine deaminase-like protein 3-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNE8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.900e-12
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 CSMALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEG 138
            CSMALVHSR+RRV+Y  +NP+ G LGS   LHT  +LNH+YRVF  
Sbjct:  233 CSMALVHSRVRRVIYVTKNPRSGALGSCHFLHTQRSLNHRYRVFHA 278
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BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Match: UPI00083C5AF7 (probable inactive tRNA-specific adenosine deaminase-like protein 3 n=1 Tax=Rhinopithecus bieti TaxID=61621 RepID=UPI00083C5AF7)

HSP 1 Score: 64.7 bits (156), Expect = 5.410e-12
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 CSMALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEGVCLEECR 159
            C+MALVHSRI RV YGA +P DG LG+   +H    LNH+++VF GV  EECR
Sbjct:   69 CAMALVHSRILRVFYGAPSP-DGALGTRFRIHARPDLNHRFQVFRGVLEEECR 120
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BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Match: A0A6P8HEC4_ACTTE (probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HEC4_ACTTE)

HSP 1 Score: 67.4 bits (163), Expect = 8.600e-12
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 CSMALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEGVCLEEC 156
            CSMALVHSRIRRV YG ++P  G LGS   LHT   LNH + VF G+  +EC
Sbjct:  349 CSMALVHSRIRRVFYGCKDPSVGALGSKYRLHTQDGLNHHFEVFCGILEKEC 400
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BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Match: A0A6P4Y6D1_BRABE (probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1 n=2 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y6D1_BRABE)

HSP 1 Score: 66.2 bits (160), Expect = 2.170e-11
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 CSMALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEGVCLEEC 156
            C+MALVHSRIRRV YGA +P +G LG+   LHT   +NH+Y VF+ V LEEC
Sbjct:  331 CAMALVHSRIRRVFYGAPHP-NGALGTKYSLHTQPNINHRYEVFKHVMLEEC 381
[Close]
BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Match: A0A6A0GTD3_HYAAZ (CMP/dCMP-type deaminase domain-containing protein (Fragment) n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GTD3_HYAAZ)

HSP 1 Score: 64.7 bits (156), Expect = 2.230e-11
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 CSMALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEGVCLEEC 156
            C+MAL+HSR++RV Y  RN + G LGS++ LHTL  +NH+Y VF    +E+C
Sbjct:  150 CAMALLHSRVQRVFYHHRNAEKGALGSVVKLHTLPNINHRYEVFNVTAVEDC 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149747.3328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7W1_ECTSI2.190e-2071.70CMP/dCMP-type deaminase domain-containing protein ... [more]
E2B9Q0_HARSA1.080e-1358.49tRNA-specific adenosine deaminase-like protein 3 n... [more]
UPI0013F2132B2.010e-1356.60probable inactive tRNA-specific adenosine deaminas... [more]
A0A6P3Y1D6_DINQU2.050e-1354.72probable inactive tRNA-specific adenosine deaminas... [more]
UPI0009959BDE2.480e-1252.83probable inactive tRNA-specific adenosine deaminas... [more]
A0A1V9YNE8_9STRA3.900e-1263.04Inactive tRNA-specific adenosine deaminase-like pr... [more]
UPI00083C5AF75.410e-1258.49probable inactive tRNA-specific adenosine deaminas... [more]
A0A6P8HEC4_ACTTE8.600e-1259.62probable inactive tRNA-specific adenosine deaminas... [more]
A0A6P4Y6D1_BRABE2.170e-1161.54probable inactive tRNA-specific adenosine deaminas... [more]
A0A6A0GTD3_HYAAZ2.230e-1151.92CMP/dCMP-type deaminase domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149747contigH-elongata_contig149747:1154..1312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.6e-15
Seed eggNOG ortholog2880.D7G7W1
Preferred nameADAT3
KEGG koko:K07117,ko:K15442
GOsGO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1902494
EggNOG free text desc.RNA modification
EggNOG OGsCOG0590@1,KOG2771@2759
COG Functional cat.FJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size153
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.496034-UTR-H-elongata_contig149747:1153..11591622929885.496034-UTR-H-elongata_contig149747:1153..1159Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149747 1154..1159 +
1691679195.320379-UTR-H-elongata_contig149747:1153..11591691679195.320379-UTR-H-elongata_contig149747:1153..1159Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149747 1154..1159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.5138144-CDS-H-elongata_contig149747:1159..13121622929885.5138144-CDS-H-elongata_contig149747:1159..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149747 1160..1312 +
1691679195.3374104-CDS-H-elongata_contig149747:1159..13121691679195.3374104-CDS-H-elongata_contig149747:1159..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149747 1160..1312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149747.3328.1prot_H-elongata_contig149747.3328.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149747 1160..1312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149747.3328.1

>prot_H-elongata_contig149747.3328.1 ID=prot_H-elongata_contig149747.3328.1|Name=mRNA_H-elongata_contig149747.3328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MALVHSRIRRVVYGARNPKDGCLGSLMMLHTLSALNHKYRVFEGVCLEEC
R
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mRNA from alignment at H-elongata_contig149747:1154..1312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149747.3328.1 ID=mRNA_H-elongata_contig149747.3328.1|Name=mRNA_H-elongata_contig149747.3328.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig149747:1154..1312+ (Himanthalia elongata Himel1 dioecious)
TGCTCTATGGCGCTGGTGCACAGCAGGATCAGGAGAGTCGTATACGGTGC
CAGGAACCCCAAAGATGGCTGTCTGGGGTCGTTGATGATGCTACATACGC
TATCGGCGCTTAACCATAAATATCGTGTGTTTGAGGGGGTGTGCCTTGAA
GAGTGCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig149747:1154..1312+

>mRNA_H-elongata_contig149747.3328.1 ID=mRNA_H-elongata_contig149747.3328.1|Name=mRNA_H-elongata_contig149747.3328.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig149747:1154..1312+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCTGGTGCACAGCAGGATCAGGAGAGTCGTATACGGTGCCAGGAA
CCCCAAAGATGGCTGTCTGGGGTCGTTGATGATGCTACATACGCTATCGG
CGCTTAACCATAAATATCGTGTGTTTGAGGGGGTGTGCCTTGAAGAGTGC
CGCATGGCGCTGGTGCACAGCAGGATCAGGAGAGTCGTATACGGTGCCAG
GAACCCCAAAGATGGCTGTCTGGGGTCGTTGATGATGCTACATACGCTAT
CGGCGCTTAACCATAAATATCGTGTGTTTGAGGGGGTGTGCCTTGAAGAG
TGCCGC
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