mRNA_H-elongata_contig149744.3327.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149744.3327.1
Unique NamemRNA_H-elongata_contig149744.3327.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Match: D7FU84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU84_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 4.810e-19
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:   37 VLHEISIILDTGLDRKTLSILVELVESGVNPEALAAVVKELRREAAALN 183
            VLHEIS ILDTGLDRKTLS+L+EL+ESGVNPEALAAVVKELRREAA L+
Sbjct:   13 VLHEISTILDTGLDRKTLSLLLELIESGVNPEALAAVVKELRREAATLS 61
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BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Match: A0A4P9Z527_9FUNG (Mitotic-spindle organizing protein 1 (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z527_9FUNG)

HSP 1 Score: 67.4 bits (163), Expect = 1.060e-13
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   37 VLHEISIILDTGLDRKTLSILVELVESGVNPEALAAVVKELRREAAALNS 186
            VLHEIS +L+TGLDR+ L + V++ E GVNPEALAAVVKELRREAAA+ +
Sbjct:    1 VLHEISTLLNTGLDREQLGLCVKMCERGVNPEALAAVVKELRREAAAIKA 50
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BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Match: C1FII7_MICCC (Uncharacterized protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FII7_MICCC)

HSP 1 Score: 67.8 bits (164), Expect = 1.150e-13
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   37 VLHEISIILDTGLDRKTLSILVELVESGVNPEALAAVVKELRREAAALNS 186
            + HEIS +LD GLD+++L+IL+ L E+GVNPEALAAVVKELRREAAAL +
Sbjct:   17 IAHEISKLLDCGLDKESLAILIALCENGVNPEALAAVVKELRREAAALQA 66
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BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Match: A0A0M0JFJ5_9EUKA (Mitotic-spindle organizing protein 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFJ5_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 1.580e-13
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   37 VLHEISIILDTGLDRKTLSILVELVESGVNPEALAAVVKELRREAAALNS 186
            VL++IS +L TGLDR+TL++LV L ESGVNPEALAAV+KELRRE AAL +
Sbjct:   13 VLYDISQLLQTGLDRETLAVLVGLTESGVNPEALAAVIKELRRETAALRA 62
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BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Match: A0A397UZH9_9GLOM (Mitotic-spindle organizing protein 1 n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397UZH9_9GLOM)

HSP 1 Score: 67.0 bits (162), Expect = 2.010e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   37 VLHEISIILDTGLDRKTLSILVELVESGVNPEALAAVVKELRREAA 174
            +LHEIS IL+TGLDR TLS+ + L E+GVNPEALAAV+KELRRE+A
Sbjct:   15 ILHEISTILNTGLDRDTLSLCLSLCENGVNPEALAAVIKELRRESA 60
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BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Match: A0A388L457_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L457_CHABU)

HSP 1 Score: 67.4 bits (163), Expect = 2.650e-13
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   37 VLHEISIILDTGLDRKTLSILVELVESGVNPEALAAVVKELRREAAALNS 186
            + +EIS +L+TGLDR  LSIL+ L E+GVNPEALAAVVKELRREAAAL +
Sbjct:   15 IAYEISKVLNTGLDRDMLSILISLCENGVNPEALAAVVKELRREAAALQA 64
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BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Match: A0A2V0NS68_9CHLO (Mitotic-spindle organizing protein-like n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NS68_9CHLO)

HSP 1 Score: 67.0 bits (162), Expect = 2.850e-13
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   40 LHEISIILDTGLDRKTLSILVELVESGVNPEALAAVVKELRREAAALNS 186
            LH+IS ILDTGLD++TL ILV L E+GVNPEALA VVKELRREAA L +
Sbjct:   15 LHQISNILDTGLDKETLRILVGLCEAGVNPEALAHVVKELRREAALLRA 63
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BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Match: A0A015J5U2_RHIIW (Mitotic-spindle organizing protein 1 n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015J5U2_RHIIW)

HSP 1 Score: 67.4 bits (163), Expect = 2.860e-13
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   28 ISAVLHEISIILDTGLDRKTLSILVELVESGVNPEALAAVVKELRREAAALNS 186
            I  VLHE+S +L+TGLDR TLS+ + L E+GVNPEALAAV+KELRRE+ +L S
Sbjct:    2 ILKVLHEMSTLLNTGLDRDTLSLCLNLCENGVNPEALAAVIKELRRESVSLKS 54
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BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Match: A0A0L0H5X0_SPIPD (Mitotic-spindle organizing protein 1 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H5X0_SPIPD)

HSP 1 Score: 66.6 bits (161), Expect = 3.230e-13
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   37 VLHEISIILDTGLDRKTLSILVELVESGVNPEALAAVVKELRREAAAL 180
            +LHEIS IL+T LDR+TLS+ V L ESGVNPEALAAV+KEL+RE+ AL
Sbjct:   14 ILHEISRILNTSLDRETLSLCVSLCESGVNPEALAAVIKELKRESRAL 61
[Close]
BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Match: A0A1J9PR54_9EURO (Mitotic-spindle organizing protein 1 n=1 Tax=Emergomyces pasteurianus Ep9510 TaxID=1447872 RepID=A0A1J9PR54_9EURO)

HSP 1 Score: 66.6 bits (161), Expect = 4.040e-13
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   37 VLHEISIILDTGLDRKTLSILVELVESGVNPEALAAVVKELRREAAA 177
            +LHEIS IL+T LDR  LS+ V L+E+GVNPEALAAV+KELRREAAA
Sbjct:   22 ILHEISTILNTHLDRTELSLCVSLIENGVNPEALAAVIKELRREAAA 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149744.3327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU84_ECTSI4.810e-1987.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4P9Z527_9FUNG1.060e-1370.00Mitotic-spindle organizing protein 1 (Fragment) n=... [more]
C1FII7_MICCC1.150e-1370.00Uncharacterized protein (Fragment) n=1 Tax=Micromo... [more]
A0A0M0JFJ5_9EUKA1.580e-1372.00Mitotic-spindle organizing protein 1 n=1 Tax=Chrys... [more]
A0A397UZH9_9GLOM2.010e-1373.91Mitotic-spindle organizing protein 1 n=1 Tax=Gigas... [more]
A0A388L457_CHABU2.650e-1372.00Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A2V0NS68_9CHLO2.850e-1375.51Mitotic-spindle organizing protein-like n=1 Tax=Ra... [more]
A0A015J5U2_RHIIW2.860e-1366.04Mitotic-spindle organizing protein 1 n=1 Tax=Rhizo... [more]
A0A0L0H5X0_SPIPD3.230e-1372.92Mitotic-spindle organizing protein 1 n=2 Tax=Spize... [more]
A0A1J9PR54_9EURO4.040e-1374.47Mitotic-spindle organizing protein 1 n=1 Tax=Emerg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149744contigH-elongata_contig149744:1405..1590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog2880.D7FU84
Preferred nameMZT1
KEGG koko:K18633
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000923,GO:0000928,GO:0000930,GO:0000931,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005640,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005828,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008104,GO:0008150,GO:0008274,GO:0008275,GO:0009524,GO:0009574,GO:0009987,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019867,GO:0022402,GO:0022607,GO:0031021,GO:0031055,GO:0031090,GO:0031109,GO:0031497,GO:0031503,GO:0031965,GO:0031967,GO:0031968,GO:0031975,GO:0032153,GO:0032155,GO:0032991,GO:0033036,GO:0033566,GO:0034080,GO:0034508,GO:0034613,GO:0034622,GO:0034629,GO:0034724,GO:0034728,GO:0042175,GO:0042393,GO:0043015,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043486,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044732,GO:0046785,GO:0048285,GO:0051179,GO:0051225,GO:0051258,GO:0051276,GO:0051415,GO:0051417,GO:0051418,GO:0051641,GO:0061495,GO:0061497,GO:0061641,GO:0065003,GO:0065004,GO:0070727,GO:0070925,GO:0071103,GO:0071824,GO:0071840,GO:0072686,GO:0090307,GO:0097435,GO:0098588,GO:0098687,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1902850,GO:1903047
EggNOG free text desc.organizing protein
EggNOG OGs2CYW9@1,2S6UI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.4472609-CDS-H-elongata_contig149744:1404..15901622929885.4472609-CDS-H-elongata_contig149744:1404..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149744 1405..1590 +
1691679195.3046892-CDS-H-elongata_contig149744:1404..15901691679195.3046892-CDS-H-elongata_contig149744:1404..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149744 1405..1590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149744.3327.1prot_H-elongata_contig149744.3327.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149744 1405..1590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149744.3327.1

>prot_H-elongata_contig149744.3327.1 ID=prot_H-elongata_contig149744.3327.1|Name=mRNA_H-elongata_contig149744.3327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
CASSCRYACISAVLHEISIILDTGLDRKTLSILVELVESGVNPEALAAVV
KELRREAAALNS
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mRNA from alignment at H-elongata_contig149744:1405..1590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149744.3327.1 ID=mRNA_H-elongata_contig149744.3327.1|Name=mRNA_H-elongata_contig149744.3327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig149744:1405..1590+ (Himanthalia elongata Himel1 dioecious)
TGCGCGTCCTCATGCCGTTACGCATGTATTTCCGCAGTTTTGCACGAGAT
CTCCATCATCCTTGACACGGGGTTGGACCGCAAGACGCTCTCCATTCTGG
TAGAATTGGTTGAAAGCGGAGTAAATCCAGAAGCTTTGGCTGCGGTCGTT
AAGGAACTGAGAAGAGAGGCGGCGGCCCTGAACTCA
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Coding sequence (CDS) from alignment at H-elongata_contig149744:1405..1590+

>mRNA_H-elongata_contig149744.3327.1 ID=mRNA_H-elongata_contig149744.3327.1|Name=mRNA_H-elongata_contig149744.3327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig149744:1405..1590+ (Himanthalia elongata Himel1 dioecious)
TGCGCGTCCTCATGCCGTTACGCATGTATTTCCGCAGTTTTGCACGAGAT
CTCCATCATCCTTGACACGGGGTTGGACCGCAAGACGCTCTCCATTCTGG
TAGAATTGGTTGAAAGCGGAGTAAATCCAGAAGCTTTGGCTGCGGTCGTT
AAGGAACTGAGAAGAGAGGCGGCGGCCCTGAACTCATGCGCGTCCTCATG
CCGTTACGCATGTATTTCCGCAGTTTTGCACGAGATCTCCATCATCCTTG
ACACGGGGTTGGACCGCAAGACGCTCTCCATTCTGGTAGAATTGGTTGAA
AGCGGAGTAAATCCAGAAGCTTTGGCTGCGGTCGTTAAGGAACTGAGAAG
AGAGGCGGCGGCCCTGAACTCA
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