mRNA_H-elongata_contig14973.3326.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE) HSP 1 Score: 267 bits (683), Expect = 9.830e-83 Identity = 139/251 (55.38%), Postives = 170/251 (67.73%), Query Frame = 2
Query: 5 LSLYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
LSLYRGLLSPV+G+G + F++Y AG F+LRRR A +T E AG++AG+ N+PMRQV ERVK VMQV++ K SPYSWSGAC VDLVRREG MGL RG AT +RE +Q IYYP+ ++ D Y + DR + VPEP+L LAGGLAGC MWLPP Y LDV+KTRMQTA PGVY+ + DC KT R EG+ + +RGLG + LRAFPMHGLVF+GYE T+ +L
Sbjct: 57 LSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDELTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYE---------IAKD--------YLLPPDRTS-TAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 289
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI) HSP 1 Score: 246 bits (628), Expect = 3.030e-75 Identity = 133/257 (51.75%), Postives = 162/257 (63.04%), Query Frame = 2
Query: 2 VLSLYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADE----GAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSILT 760
++S YRGLLSPV G+G + F++Y MA F+ R + E + AG FAG NSP R V +RVK+VMQV+ +PYSWSGACA DLVRREG GLFRG +T +RE +Q AIYYP+ V+ DL + + S VPEP LQMLAGG+AGCA WLPPVY LDV+KTR+Q+A PGVY WDC KT R+EG + +RGLG S LRAFPMHGLVFVGYE T+ +LT
Sbjct: 7 LMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRXXXXXXXXXXSGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYE---------VTKDLLAR--------RSTSGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLLT 246
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: D7FM07_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI) HSP 1 Score: 237 bits (605), Expect = 4.060e-72 Identity = 123/221 (55.66%), Postives = 150/221 (67.87%), Query Frame = 2
Query: 95 FILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
F+LRRR A +T E AG++AG+ N+PMRQV ERVK VMQV++ K SPYSWSGAC VDLVRREG MGL RG AT +RE +Q IYYP+ ++ D YF+ DR + VPEP+L LAGGLAGC MWLPP+Y LDV+KTRMQTA PGVY+ + DC KT R EG+ + +RGLG + LRAFPMHGLVF+GYE T+ +L
Sbjct: 12 FLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYE---------IAKD--------YFLPPDRTS-TAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 214
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A0A836C8G7_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA) HSP 1 Score: 217 bits (552), Expect = 4.710e-64 Identity = 119/252 (47.22%), Postives = 150/252 (59.52%), Query Frame = 2
Query: 2 VLSLYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
V SLYRGL SPVLG+G L F+A A ++ R G A + EM AG++AG +P RQV ERVK VMQV+ +PYSWSGAC VDLVR EG MGLFRG + +RE Q A+YYP V L + GH+ P+ +LAGG+AG WLPP+Y +DVLKT++QTAAPG YK++ D A KT TEG + +RGLGPS +RAFP+H +F GYE T++ L
Sbjct: 18 VKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYD-------VAKRAILPADGHI---------------SPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHL 247
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: W7TE76_9STRA (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE76_9STRA) HSP 1 Score: 211 bits (536), Expect = 2.200e-61 Identity = 116/256 (45.31%), Postives = 157/256 (61.33%), Query Frame = 2
Query: 2 VLSLYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRA--GKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFP--NPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
+ SLYRGLLSP G G F Y F R+G D +T EM +G++AG+ SP RQ+ ER+KSVMQV++A G PY WSG C V LVR+EG GLFRG ATA+RE Q A+YYP ++ SN S+ + + + + +P P L +LAGG+AG WLPP Y LDVLK+RMQ+A PGVY N+WDCA K+++ EG+ +F+RGL + +RAFP++ +F+GYE T++ L
Sbjct: 7 ISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFF--RKG-DNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSXNESNIVHRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 258
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A0A4D9D591_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D591_9STRA) HSP 1 Score: 162 bits (410), Expect = 7.530e-44 Identity = 84/182 (46.15%), Postives = 118/182 (64.84%), Query Frame = 2
Query: 224 MQVQRAGKYI--SPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFP--NPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
MQV++A + +PY WSG C V LVR+EG GLFRG ATA+RE Q A+YYP ++ SN S+ H ++ + + +P P L +LAGG+AG WLPP Y LDVLK+RMQ+A PGVY N+WDCA K+++ EG+ +F+RGL + +RAFP++ +F+GYE T++ L
Sbjct: 1 MQVRKAAGGVDKAPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSHEKNRVNRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 181
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: K8Z8A3_NANGC (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8A3_NANGC) HSP 1 Score: 164 bits (414), Expect = 2.830e-43 Identity = 98/254 (38.58%), Postives = 139/254 (54.72%), Query Frame = 2
Query: 2 VLSLYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRA--GKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
+ SLYRGLLSP G G F Y F R+G D +T EM +G++AG+ SP RQ+ ER+KSVMQV++A G PY WSG C ++ R A+Q ++ SN S+ + + + + +P P L +LAGG+AG WLPP Y LDVLK+RMQ+A PGVY N+WDCA K+++ EG+ +F+RGL + +RAFP++ +F+GYE T++ L
Sbjct: 57 ISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFF--RKG-DNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLYEMNVR------------------ALQ--------------KMMAASNASGSSSNESNIVHRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 274
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A0A482SEK8_9ARCH (MC/SLC25 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEK8_9ARCH) HSP 1 Score: 131 bits (329), Expect = 5.610e-32 Identity = 68/180 (37.78%), Postives = 99/180 (55.00%), Query Frame = 2
Query: 146 EMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPT---VSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYR 676
+++ AG++ G+ SP RQ+VER+KSVMQ+ SPYSWSGACA LV+ EG +GLF+G ++ +RE Q ++YYP S++ + D + + LAGG AG WLPP+Y DV+K+RMQTA G Y + DCA + ++ G +F+R
Sbjct: 48 DLSMAGAYTGVLQSPARQLVERIKSVMQIHERSGGKSPYSWSGACAYHLVKTEGVRVGLFQGFSSVLLREIPQFSVYYPCYEFAKSIYTEKI------------------PDNPK-------TVNFLAGGTAGVVQWLPPIYCFDVIKSRMQTAPKGAYSGLMDCARQLYQAHGSSVFFR 202
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A0A061S4Y8_9CHLO (Solute carrier family 25 (Mitochondrial carnitine/acylcarnitine transporter), member 20/29 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S4Y8_9CHLO) HSP 1 Score: 124 bits (312), Expect = 2.830e-28 Identity = 87/260 (33.46%), Postives = 126/260 (48.46%), Query Frame = 2
Query: 14 YRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHM---------TKLEMACAGSFAGIANSPMRQVVERVKSVMQVQRAGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSILTPL 766
Y+G+ +P+ G + F+ A+ LR HM T E AG+ AG +S +R ERVK+V+Q A + + + ACA +LVRR GF GLF G AT RE Q+A+Y+ T +V + + +A VV AGG AG WL Y +DV+KTR+Q A P Y + CAA + R EG + +RG+G + +RAFP+HG +F+ EA +S++ L
Sbjct: 73 YKGIGAPLCAFGVINAINFSVNALT----LRSLKDFRNTHMQQDNLEQQPTTAEALFAGAMAGFCSSFVRGPAERVKTVLQANGAASWKNKGTL--ACARELVRRHGFVDGLFTGTGATIAREIPQMALYFLTYETVKSHSLQLFGEASGTAAIVV---------------------AGGSAGVLQWLA-TYPIDVVKTRIQAAPPRTYSGLLHCAADSVRREGPGVMWRGVGVAVVRAFPLHGTIFLTSEAALSLIARL 304
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Match: A4RTN0_OSTLU (MC family transporter: carnitine/acylcarnitine n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RTN0_OSTLU) HSP 1 Score: 123 bits (308), Expect = 6.820e-28 Identity = 89/251 (35.46%), Postives = 125/251 (49.80%), Query Frame = 2
Query: 11 LYRGLLSPVLGHGTLKGFGFTAYAMAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVQR--AGKYISPYSWSGACAVDLVRREGFGMGLFRGNTATAVREAVQLAIYYPTVSSVFPNPVVFVSNDLASAGHVVYFISEDRARHSGVPEPLLQMLAGGLAGCAMWLPPVYTLDVLKTRMQTAAPGVYKNMWDCAAKTWRTEGLQMFYRGLGPSFLRAFPMHGLVFVGYEATVSIL 757
LYRGL +P+L +G + F+ A I GA+ A T L +G+ AG+ +S +R ER+K++ QV +G+Y S S A L R G G+F G AT RE Q A+Y+ T + + + D A + R + + +LAGG AG WL Y LDV K+R+Q AAPGVY + DCA K+ EG + +RGL + LRAFP+H +F EA S+L
Sbjct: 70 LYRGLTAPMLAYGAINAVAFSTNAYVRDSIEEAFGAE--AASTTLAGVVSGASAGLVSSFVRGPAERLKTIQQVVDCDSGRYRSATS----TAFTLAREHGVMKGIFAGTGATIAREIPQCAVYFLTYDRLKSVCMRKLCGDGVDARD-----APPSTRAAAI------VLAGGSAGAVQWLL-TYPLDVTKSRIQAAAPGVYSGVLDCAMKSVSREGPMVLFRGLNMALLRAFPLHASIFASCEAVHSLL 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14973.3326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14973.3326.1 >prot_H-elongata_contig14973.3326.1 ID=prot_H-elongata_contig14973.3326.1|Name=mRNA_H-elongata_contig14973.3326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp MAGSFILRRRGADEGAHMTKLEMACAGSFAGIANSPMRQVVERVKSVMQVback to top mRNA from alignment at H-elongata_contig14973:3554..6967- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14973.3326.1 ID=mRNA_H-elongata_contig14973.3326.1|Name=mRNA_H-elongata_contig14973.3326.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3414bp|location=Sequence derived from alignment at H-elongata_contig14973:3554..6967- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14973:3554..6967- >mRNA_H-elongata_contig14973.3326.1 ID=mRNA_H-elongata_contig14973.3326.1|Name=mRNA_H-elongata_contig14973.3326.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig14973:3554..6967- (Himanthalia elongata Himel1 dioecious)back to top |