mRNA_H-elongata_contig149727.3325.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149727.3325.1
Unique NamemRNA_H-elongata_contig149727.3325.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Match: A0A6H5J8A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.530e-30
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 DFVPVSYILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQIKKWSSNPR 174
            DFVPVSY+LP DYSLFVEEFRRCPNA WIMKPT+RAQGKGIFIINRLAQIKKWSSNPR
Sbjct:  107 DFVPVSYMLPADYSLFVEEFRRCPNAKWIMKPTNRAQGKGIFIINRLAQIKKWSSNPR 164
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BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Match: A0A7S1TU50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU50_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.280e-26
Identity = 46/55 (83.64%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 DFVPVSYILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQIKKWSS 165
            DF+PV+Y+LP DYSLFVEEFRR PNAMWIMKPT +AQGKGIFIIN+LAQIKKWS+
Sbjct:  103 DFIPVTYLLPADYSLFVEEFRRNPNAMWIMKPTGKAQGKGIFIINKLAQIKKWST 157
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BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Match: D7G0F7_ECTSI (Predicted tubulin-tyrosin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F7_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 5.110e-26
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:   22 ILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQIKKWSSNPR 174
            +LP DYSLFVEEFRRCPNA WIMKPT+RAQGKGIFIINRLAQIKKWSSNPR
Sbjct:    1 MLPADYSLFVEEFRRCPNAKWIMKPTNRAQGKGIFIINRLAQIKKWSSNPR 51
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BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Match: A0A835Z6J2_9STRA (Tubulin-tyrosine ligase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.840e-25
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 DFVPVSYILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQIKKWS 162
            DFVPVSY+LP DYSLFVEEF+RCPNA WIMKPT+RAQGKGIFII +LAQIKKWS
Sbjct:  104 DFVPVSYMLPADYSLFVEEFKRCPNAAWIMKPTNRAQGKGIFIIKKLAQIKKWS 157
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BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Match: A0A7S1XMP8_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMP8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.620e-25
Identity = 46/55 (83.64%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 DFVPVSYILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQIKKWSS 165
            DF+PV+Y+LP DYSLFVEEFRR PNAMWIMKPT +AQGKGIFIIN+LAQIKKWS+
Sbjct:  103 DFIPVTYLLPADYSLFVEEFRRNPNAMWIMKPTGKAQGKGIFIINKLAQIKKWST 157
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BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Match: F0YM10_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM10_AURAN)

HSP 1 Score: 102 bits (255), Expect = 1.450e-24
Identity = 44/55 (80.00%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 DFVPVSYILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQIKKWSS 165
            DFVPV+Y+LP DYSLFVEEFRRCPNAMWIMKP + AQG+GIFIIN+L+QIK+WS+
Sbjct:   94 DFVPVTYMLPADYSLFVEEFRRCPNAMWIMKPANAAQGRGIFIINKLSQIKRWSN 148
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BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Match: A0A061QRZ1_9CHLO (Putative tubulin polyglutamylase ttll1 isoform x1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QRZ1_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 1.650e-24
Identity = 41/55 (74.55%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 DFVPVSYILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQIKKWSS 165
            DF+PV+YILP DYSLFVEEFR+ PN+MWIMKPTSR+QGKGIF+ N+L+Q+KKW++
Sbjct:   26 DFIPVTYILPQDYSLFVEEFRKQPNSMWIMKPTSRSQGKGIFLFNKLSQVKKWAA 80
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BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Match: A0A7R9YFM8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFM8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.330e-24
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 DFVPVSYILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQIKKWSS 165
            DF+PV+Y+LP DYSLFVEEFRR P AMWIMKPT +AQGKGIF+IN+LAQIKKWSS
Sbjct:  102 DFIPVTYMLPADYSLFVEEFRRNPRAMWIMKPTGKAQGKGIFLINKLAQIKKWSS 156
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BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Match: A0A418FU72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FU72_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.210e-24
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 DFVPVSYILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQIKKWSS 165
            DF+PV+Y LP DYSLFVEEFRR PN MWIMKP S+AQGKGIFIIN+L+QIKKW++
Sbjct:  102 DFIPVTYTLPGDYSLFVEEFRRNPNVMWIMKPCSKAQGKGIFIINKLSQIKKWAN 156
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BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Match: A7TCA1_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7TCA1_NEMVE)

HSP 1 Score: 94.4 bits (233), Expect = 1.410e-23
Identity = 38/58 (65.52%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 DFVPVSYILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQIKKWSSNPR 174
            DF+PV+++LP DY+LFVEEFR+ P++ WIMKPT+R+QGKGIFIIN+L+Q+KKWS + +
Sbjct:   65 DFIPVTFVLPADYNLFVEEFRKNPSSTWIMKPTNRSQGKGIFIINKLSQLKKWSKDSK 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149727.3325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8A0_9PHAE4.530e-3093.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1TU50_9STRA1.280e-2683.64Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D7G0F7_ECTSI5.110e-2692.16Predicted tubulin-tyrosin ligase n=1 Tax=Ectocarpu... [more]
A0A835Z6J2_9STRA1.840e-2587.04Tubulin-tyrosine ligase family-domain-containing p... [more]
A0A7S1XMP8_9STRA4.620e-2583.64Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
F0YM10_AURAN1.450e-2480.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A061QRZ1_9CHLO1.650e-2474.55Putative tubulin polyglutamylase ttll1 isoform x1 ... [more]
A0A7R9YFM8_9STRA3.330e-2481.82Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A418FU72_9STRA6.210e-2478.18Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A7TCA1_NEMVE1.410e-2365.52Predicted protein n=2 Tax=Nematostella vectensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149727contigH-elongata_contig149727:1274..1447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7G0F7
KEGG koko:K16599,ko:K16603
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070739,GO:0070740,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein polyglycylation
EggNOG OGsKOG2157@1,KOG2157@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.2356422-CDS-H-elongata_contig149727:1273..14471622929885.2356422-CDS-H-elongata_contig149727:1273..1447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149727 1274..1447 -
1691679195.1987817-CDS-H-elongata_contig149727:1273..14471691679195.1987817-CDS-H-elongata_contig149727:1273..1447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149727 1274..1447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149727.3325.1prot_H-elongata_contig149727.3325.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149727 1274..1447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149727.3325.1

>prot_H-elongata_contig149727.3325.1 ID=prot_H-elongata_contig149727.3325.1|Name=mRNA_H-elongata_contig149727.3325.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
DFVPVSYILPVDYSLFVEEFRRCPNAMWIMKPTSRAQGKGIFIINRLAQI
KKWSSNPR
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mRNA from alignment at H-elongata_contig149727:1274..1447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149727.3325.1 ID=mRNA_H-elongata_contig149727.3325.1|Name=mRNA_H-elongata_contig149727.3325.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig149727:1274..1447- (Himanthalia elongata Himel1 dioecious)
GATTTCGTCCCCGTTTCCTACATACTCCCGGTGGACTACTCCCTGTTCGT
GGAGGAGTTTCGTCGGTGTCCAAACGCCATGTGGATCATGAAGCCGACAA
GTCGGGCTCAGGGCAAGGGCATCTTCATCATCAACAGACTGGCGCAGATA
AAGAAGTGGTCCTCGAACCCGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig149727:1274..1447-

>mRNA_H-elongata_contig149727.3325.1 ID=mRNA_H-elongata_contig149727.3325.1|Name=mRNA_H-elongata_contig149727.3325.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig149727:1274..1447- (Himanthalia elongata Himel1 dioecious)
GATTTCGTCCCCGTTTCCTACATACTCCCGGTGGACTACTCCCTGTTCGT
GGAGGAGTTTCGTCGGTGTCCAAACGCCATGTGGATCATGAAGCCGACAA
GTCGGGCTCAGGGCAAGGGCATCTTCATCATCAACAGACTGGCGCAGATA
AAGAAGTGGTCCTCGAACCCGAGGGATTTCGTCCCCGTTTCCTACATACT
CCCGGTGGACTACTCCCTGTTCGTGGAGGAGTTTCGTCGGTGTCCAAACG
CCATGTGGATCATGAAGCCGACAAGTCGGGCTCAGGGCAAGGGCATCTTC
ATCATCAACAGACTGGCGCAGATAAAGAAGTGGTCCTCGAACCCGAGG
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