mRNA_H-elongata_contig149607.3316.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149607.3316.1
Unique NamemRNA_H-elongata_contig149607.3316.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149607.3316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149607contigH-elongata_contig149607:27..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.4640296-CDS-H-elongata_contig149607:26..4011622929884.4640296-CDS-H-elongata_contig149607:26..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149607 27..401 +
1691679194.8571177-CDS-H-elongata_contig149607:26..4011691679194.8571177-CDS-H-elongata_contig149607:26..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149607 27..401 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.4763489-UTR-H-elongata_contig149607:401..5861622929884.4763489-UTR-H-elongata_contig149607:401..586Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149607 402..586 +
1691679194.8684359-UTR-H-elongata_contig149607:401..5861691679194.8684359-UTR-H-elongata_contig149607:401..586Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149607 402..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149607.3316.1prot_H-elongata_contig149607.3316.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149607 27..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149607.3316.1

>prot_H-elongata_contig149607.3316.1 ID=prot_H-elongata_contig149607.3316.1|Name=mRNA_H-elongata_contig149607.3316.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
KHPIRHHHLRSNATTANRNGAIFTHFHAHTLHLSSSGTFRITFLRGSLLY
AKRDIVGLQPDFIDGTPRITSYHNPQRKIKQGRSAACSACSLSHSFRSTY
KIIALTNEIHLKAAGYLLCLIPRV*
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mRNA from alignment at H-elongata_contig149607:27..586+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149607.3316.1 ID=mRNA_H-elongata_contig149607.3316.1|Name=mRNA_H-elongata_contig149607.3316.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=560bp|location=Sequence derived from alignment at H-elongata_contig149607:27..586+ (Himanthalia elongata Himel1 dioecious)
AAACACCCCATCCGCCATCATCATCTTCGGTCAAACGCAACCACAGCCAA
CCGTAACGGCGCAATCTTCACCCATTTTCATGCGCATACGCTTCACCTCT
CCTCCTCAGGGACCTTTCGTATTACTTTCCTCCGAGGATCCCTCCTCTAC
GCCAAGAGAGATATCGTTGGGCTACAACCGGATTTCATCGACGGTACACC
GCGCATCACATCATATCATAATCCACAACGTAAGATAAAGCAAGGACGCA
GCGCCGCCTGTTCTGCGTGTTCCCTATCCCATTCATTCCGATCGACATAT
AAAATAATAGCATTGACAAACGAAATACACCTCAAAGCGGCGGGATACCT
TCTATGTCTGATCCCGCGGGTTTGAAAAGATATAGCAACAACACGGCAAA
GCTTCACTAGACGATAGTTTCGAACTGCTTTGATGCTTCACTATATGATC
GATCTCATGTGTTACCAGATTTCGGTGAGGGCCCTGAAGTCTGGCCAAAA
TCGTTTCTCGATGGTGCTACAGTAAAAACCAAGGAGGAAATCCTACGATC
CACTTCTCCT
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Coding sequence (CDS) from alignment at H-elongata_contig149607:27..586+

>mRNA_H-elongata_contig149607.3316.1 ID=mRNA_H-elongata_contig149607.3316.1|Name=mRNA_H-elongata_contig149607.3316.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig149607:27..586+ (Himanthalia elongata Himel1 dioecious)
AAACACCCCATCCGCCATCATCATCTTCGGTCAAACGCAACCACAGCCAA
CCGTAACGGCGCAATCTTCACCCATTTTCATGCGCATACGCTTCACCTCT
CCTCCTCAGGGACCTTTCGTATTACTTTCCTCCGAGGATCCCTCCTCTAC
GCCAAGAGAGATATCGTTGGGCTACAACCGGATTTCATCGACGGTACACC
GCGCATCACATCATATCATAATCCACAACGTAAGATAAAGCAAGGACGCA
GCGCCGCCTGTTCTGCGTGTTCCCTATCCCATTCATTCCGATCGACATAT
AAAATAATAGCATTGACAAACGAAATACACCTCAAAGCGGCGGGATACCT
TCTATGTCTGATCCCGCGGGTTTGAAAACACCCCATCCGCCATCATCATC
TTCGGTCAAACGCAACCACAGCCAACCGTAACGGCGCAATCTTCACCCAT
TTTCATGCGCATACGCTTCACCTCTCCTCCTCAGGGACCTTTCGTATTAC
TTTCCTCCGAGGATCCCTCCTCTACGCCAAGAGAGATATCGTTGGGCTAC
AACCGGATTTCATCGACGGTACACCGCGCATCACATCATATCATAATCCA
CAACGTAAGATAAAGCAAGGACGCAGCGCCGCCTGTTCTGCGTGTTCCCT
ATCCCATTCATTCCGATCGACATATAAAATAATAGCATTGACAAACGAAA
TACACCTCAAAGCGGCGGGATACCTTCTATGTCTGATCCCGCGGGTTTGA
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