mRNA_H-elongata_contig14954.3314.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14954.3314.1
Unique NamemRNA_H-elongata_contig14954.3314.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14954.3314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14954contigH-elongata_contig14954:20..1356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size392
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.3693373-CDS-H-elongata_contig14954:21..2091622929884.3693373-CDS-H-elongata_contig14954:21..209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14954 22..209 -
1691679194.8242517-CDS-H-elongata_contig14954:21..2091691679194.8242517-CDS-H-elongata_contig14954:21..209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14954 22..209 -
1622929884.3859298-CDS-H-elongata_contig14954:1154..13561622929884.3859298-CDS-H-elongata_contig14954:1154..1356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14954 1155..1356 -
1691679194.8345597-CDS-H-elongata_contig14954:1154..13561691679194.8345597-CDS-H-elongata_contig14954:1154..1356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14954 1155..1356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14954.3314.1prot_H-elongata_contig14954.3314.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14954 22..1356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14954.3314.1

>prot_H-elongata_contig14954.3314.1 ID=prot_H-elongata_contig14954.3314.1|Name=mRNA_H-elongata_contig14954.3314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
AQPIAAAAASDKPDATGEPTKRKDSVAGSVSEMTRGKDRGGHSAGLPDGV
STTTRKDASDGKSVIQPVKASAGVGASRKGRKVSDGRAGSRSVGENLGTD
AMMSKAGKSEDESMSKGDADVANAAVVAAG
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mRNA from alignment at H-elongata_contig14954:20..1356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14954.3314.1 ID=mRNA_H-elongata_contig14954.3314.1|Name=mRNA_H-elongata_contig14954.3314.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1337bp|location=Sequence derived from alignment at H-elongata_contig14954:20..1356- (Himanthalia elongata Himel1 dioecious)
GCGCAGCCCATAGCGGCCGCCGCAGCCTCGGACAAGCCCGATGCCACGGG
CGAGCCGACCAAGCGAAAGGATAGTGTGGCTGGGAGTGTGAGTGAGATGA
CGCGCGGCAAGGACCGCGGGGGGCATTCCGCGGGCCTTCCTGATGGGGTT
TCAACGACGACTAGGAAGGATGCCTCAGACGGGAAGAGCGTCATCCAACC
GGGTGAGCGAGTCGTTTTCGTCGTTGTGTCGTGTAATTAGTAAGTGGTGA
GGGGTCGTGTGGTGTGGGTTAGCACTCGCGGTGGTGGAAATTGTTGAGAC
AGGCGTGGCGAAGCGTGGCAGGCAAGATGACTAACGAGGCGCCAGGTGAT
GGCTCTGTGTCTGTTAATATCCTTGTCTAGTCTTTGTCTATTACTAGTGT
CTTGTACCGCGCTTTGCGTGTATGTTTGTTGTTTGCCCCTGTTTTTGTGT
TTAAAGCGTTTTAATGGCTGCATGTTCCCGTTGCCGACCACCAGCGATTT
GCTGCGGGATTCTTGATTACTCTCTTGGCTGCGGTGGAGGGATTAGGCAG
GGGTAGTGGAAATGTTAAAGCCGAAGTGTCTGTTTTTAGCGGTGCCGGAG
ACCCTTTGCGATAAGCATGAAACAAGTAATGTGCACATTCAAAGGGTCTT
AATGAGTTCATATGTTTAAAAATAAAAATGATGTGAAGAAGGCGATATCG
TATCATGGGCTAACTTCACTCACTAGCCTAGAGCCCTAGCTATACTATGT
GTGAGTGTAAATTTCCCTCCCCTATGGATCTTCTATTTTATATACAGTAT
ACATTGAGAGAGATGTTTAGATATGTGTATACCAAATGTGAATAGTGCTG
TACGTCTATATCGTGCGATTCTACAAATGTGAATAGTGCTCTCTAGTCTT
TAGGCTCACTAACAAAAAACAACGCGCGGGGCTGATTATTCGCTCCTTTT
ATTGATTCCTTTTGTTTATTTATTTACGTCTTTTATTTATTTATTATGTA
TTTTGTTTTATTTGTCTTTTATTTTATTTATATATATATATTTATGTCTT
TTTAATGTATTTTATTGATTTATCTATTTTTACTCGGTATCTCGCCCTTT
TCACTCGATATACCCTCTGCGATGCTGCACGCGCCGGGGATACACAGTCA
AGGCGAGCGCAGGCGTAGGCGCCAGCCGTAAGGGACGCAAGGTGTCCGAC
GGTCGCGCGGGGTCTCGTTCCGTTGGAGAAAACCTTGGCACCGACGCTAT
GATGTCAAAGGCGGGGAAAAGCGAAGACGAAAGCATGAGCAAGGGTGACG
CCGATGTCGCAAACGCTGCGGTGGTGGCTGCTGGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig14954:20..1356-

>mRNA_H-elongata_contig14954.3314.1 ID=mRNA_H-elongata_contig14954.3314.1|Name=mRNA_H-elongata_contig14954.3314.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig14954:20..1356- (Himanthalia elongata Himel1 dioecious)
GCGCAGCCCATAGCGGCCGCCGCAGCCTCGGACAAGCCCGATGCCACGGG
CGAGCCGACCAAGCGAAAGGATAGTGTGGCTGGGAGTGTGAGTGAGATGA
CGCGCGGCAAGGACCGCGGGGGGCATTCCGCGGGCCTTCCTGATGGGGTT
TCAACGACGACTAGGAAGGATGCCTCAGACGGGAAGAGCGTCATCCAACC
GGGCGCAGCCCATAGCGGCCGCCGCAGCCTCGGACAAGCCCGATGCCACG
GGCGAGCCGACCAAGCGAAAGGATAGTGTGGCTGGGAGTGTGAGTGAGAT
GACGCGCGGCAAGGACCGCGGGGGGCATTCCGCGGGCCTTCCTGATGGGG
TTTCAACGACGACTAGGAAGGATGCCTCAGACGGGAAGAGCGTCATCCAA
CCGGTCAAGGCGAGCGCAGGCGTAGGCGCCAGCCGTAAGGGACGCAAGGT
GTCCGACGGTCGCGCGGGGTCTCGTTCCGTTGGAGAAAACCTTGGCACCG
ACGCTATGATGTCAAAGGCGGGGAAAAGCGAAGACGAAAGCATGAGCAAG
GGTGACGCCGATGTCGCAAACGCTGCGGTGGTGGCTGCTGGTTCAAGGCG
AGCGCAGGCGTAGGCGCCAGCCGTAAGGGACGCAAGGTGTCCGACGGTCG
CGCGGGGTCTCGTTCCGTTGGAGAAAACCTTGGCACCGACGCTATGATGT
CAAAGGCGGGGAAAAGCGAAGACGAAAGCATGAGCAAGGGTGACGCCGAT
GTCGCAAACGCTGCGGTGGTGGCTGCTGGT
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