mRNA_H-elongata_contig149522.3312.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149522.3312.1
Unique NamemRNA_H-elongata_contig149522.3312.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Match: D8LN34_ECTSI (FAD dependent oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN34_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.060e-44
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    1 QVLVCEREGMVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGREALYDYCSERGVPHDRCGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP 309
            +VLVCERE  VGQGTTSRNSEVIHAGLYY+PGS+KA+LCV+GREALY YC ERG+PH  CGKLVVAS+ +Q PAL++LH RA A  V D RL+G+EE  EMEP
Sbjct:   33 EVLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGREALYRYCGERGLPHRHCGKLVVASSESQLPALRELHERAKACGVGDVRLLGAEEAGEMEP 135
[Close]
BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Match: A0A6H5JKE6_9PHAE (DAO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE6_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.410e-39
Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    1 QVLVCEREGMVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGR------EALYDYCSERGVPHDRCGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP 309
            +VLVCERE  VGQGTTSRNSEVIHAGLYY+PGS+KA+LCV+GR      EALY YC E+GVPH RCGKLVVAS+ +Q PAL++LH RA A  V D RL+G+ E REMEP
Sbjct:    4 KVLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREEFAAEALYRYCGEKGVPHRRCGKLVVASSESQLPALRELHERAKACGVGDVRLLGAAEAREMEP 112
[Close]
BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Match: UPI0014593F12 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Azoarcus taiwanensis TaxID=666964 RepID=UPI0014593F12)

HSP 1 Score: 134 bits (338), Expect = 7.110e-36
Identity = 66/103 (64.08%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:    1 QVLVCEREGMVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGREALYDYCSERGVPHDRCGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP 309
            QVL+ E  G  G G +SRNSEVIHAGLYY  GS+KAQLCVRGR  LY+YC ERG+ H +CGKLVVA+  AQR AL+D+HA+A+AN V D RL+ + E R MEP
Sbjct:   39 QVLILEAAGAFGTGASSRNSEVIHAGLYYPAGSLKAQLCVRGRHLLYEYCRERGIAHRQCGKLVVATGEAQRAALEDIHAQALANGVDDVRLIEAAEARSMEP 141
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BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Match: A0A1E3W6Y5_9HYPH (FAD-dependent oxidoreductase n=1 Tax=Methyloceanibacter methanicus TaxID=1774968 RepID=A0A1E3W6Y5_9HYPH)

HSP 1 Score: 132 bits (333), Expect = 2.370e-35
Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:    1 QVLVCEREGMVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGREALYDYCSERGVPHDRCGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP 309
            +VLV E E  +GQGT+SRNSEVIHAGLYY PGS++A+ CV GR ALY YC+ERG+PH RCGKLVVA+ R + PAL+ L  RA AN V D  +VG+ ++ ++EP
Sbjct:   28 EVLVLEGESAIGQGTSSRNSEVIHAGLYYAPGSLRARFCVEGRRALYRYCTERGIPHRRCGKLVVATAREEEPALQALFERAEANGVEDIEMVGAAQLAQLEP 130
[Close]
BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Match: A0A1E3WDF5_9HYPH (FAD-dependent oxidoreductase n=1 Tax=Methyloceanibacter marginalis TaxID=1774971 RepID=A0A1E3WDF5_9HYPH)

HSP 1 Score: 132 bits (332), Expect = 3.400e-35
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:    1 QVLVCEREGMVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGREALYDYCSERGVPHDRCGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP 309
            +VLV ER+  VGQ T+SRNSEVIHAGLYY PGS+KA+LCV GR ALY YC+ERGVPH RCGKLVVA++  +  AL+ L+ RAVAN V D  L+G   + E+EP
Sbjct:   28 EVLVLERDDGVGQETSSRNSEVIHAGLYYPPGSLKARLCVGGRHALYRYCAERGVPHRRCGKLVVATSADEEAALQQLYERAVANGVEDVELIGGGRLEELEP 130
[Close]
BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Match: A0A2U8GN07_9RHOO (FAD-dependent oxidoreductase n=6 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2U8GN07_9RHOO)

HSP 1 Score: 127 bits (318), Expect = 4.210e-33
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    1 QVLVCEREGMVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGREALYDYCSERGVPHDRCGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP 309
            +V++ ERE   G G ++RNSEVIHAGLYY PGS+KA LCV GR+ LY YC+ERG+ H RCGKL+VA    Q  ALK++HARA  N V D R + S E+R+MEP
Sbjct:   28 EVIILERETTFGSGISARNSEVIHAGLYYAPGSLKAHLCVSGRDMLYRYCAERGIGHQRCGKLLVAPQPQQTDALKNIHARAQTNGVHDLRWLNSSEIRDMEP 130
[Close]
BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Match: A0A1E3VV69_9HYPH (FAD-dependent oxidoreductase n=1 Tax=Methyloceanibacter superfactus TaxID=1774969 RepID=A0A1E3VV69_9HYPH)

HSP 1 Score: 126 bits (316), Expect = 7.580e-33
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 QVLVCEREGMVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGREALYDYCSERGVPHDRCGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP 309
            +VLV E E  +GQG +SRNSEVIHAGLYY PGS+KA+ CV GR +LY YCSE GVPH RCGKLVVA+T  +  A++ L+ RA AN V D  L+G E ++ +EP
Sbjct:   28 EVLVLEAESRIGQGVSSRNSEVIHAGLYYPPGSLKARFCVEGRRSLYRYCSEHGVPHRRCGKLVVATTPDEDAAVQALYERAQANGVEDIALIGREHLKAIEP 130
[Close]
BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Match: A0A1E3VQV7_9HYPH (FAD-dependent oxidoreductase n=2 Tax=Methyloceanibacter TaxID=1484898 RepID=A0A1E3VQV7_9HYPH)

HSP 1 Score: 126 bits (316), Expect = 9.010e-33
Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    1 QVLVCEREGMVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGREALYDYCSERGVPHDRCGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP 309
            +VLV ER   VGQ T+SRNSEVIHAGLYY PGS++A+ CV GR ALY YC ERGVPH RCGKLVVA+   + PAL+ LH RA+AN V +  L+    +  MEP
Sbjct:   32 EVLVLERGSDVGQETSSRNSEVIHAGLYYPPGSLRAKFCVEGRRALYRYCEERGVPHSRCGKLVVAANGEEVPALEALHRRALANGVEEVELIDRSRLEVMEP 134
[Close]
BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Match: UPI000E5BF04F (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Aquabacterium tepidiphilum TaxID=2315841 RepID=UPI000E5BF04F)

HSP 1 Score: 126 bits (316), Expect = 9.010e-33
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    1 QVLVCEREGMVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGREALYDYCSERGVPHDRCGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP 309
            + +V E E  +G GT+SRNSEVIHAG+YY PGS KA+LCV GRE LY YC ERG+ H RCGKL+VA + AQ+P L+ + A+A A  V D RL+G EE R MEP
Sbjct:   28 ETVVLEAETAIGTGTSSRNSEVIHAGIYYAPGSWKARLCVAGRERLYAYCEERGIAHRRCGKLIVAGSHAQQPRLEAIRAQAAACGVHDLRLLGREEARAMEP 130
[Close]
BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Match: K0HYK4_9BURK (FAD dependent oxidoreductase n=12 Tax=Acidovorax TaxID=12916 RepID=K0HYK4_9BURK)

HSP 1 Score: 125 bits (315), Expect = 1.060e-32
Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:    1 QVLVCEREGMVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGREALYDYCSERGVPHDRCGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP 309
            +V+V E    +G GT+SRNSEVIHAGLYY  GS+KA+LCVRG+E LY YC+ERGVPH RCGKL+VA++ AQ  +L+ + ARA AN V+D + +  EE  EMEP
Sbjct:   29 EVMVLEAADAIGTGTSSRNSEVIHAGLYYPAGSLKARLCVRGKELLYAYCAERGVPHRRCGKLLVATSAAQLDSLEGIQARARANGVLDLQRLSREEALEMEP 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149522.3312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN34_ECTSI1.060e-4472.82FAD dependent oxidoreductase n=1 Tax=Ectocarpus si... [more]
A0A6H5JKE6_9PHAE1.410e-3969.72DAO domain-containing protein (Fragment) n=1 Tax=E... [more]
UPI0014593F127.110e-3664.08NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Azoarc... [more]
A0A1E3W6Y5_9HYPH2.370e-3561.17FAD-dependent oxidoreductase n=1 Tax=Methyloceanib... [more]
A0A1E3WDF5_9HYPH3.400e-3564.08FAD-dependent oxidoreductase n=1 Tax=Methyloceanib... [more]
A0A2U8GN07_9RHOO4.210e-3359.22FAD-dependent oxidoreductase n=6 Tax=Betaproteobac... [more]
A0A1E3VV69_9HYPH7.580e-3360.19FAD-dependent oxidoreductase n=1 Tax=Methyloceanib... [more]
A0A1E3VQV7_9HYPH9.010e-3361.17FAD-dependent oxidoreductase n=2 Tax=Methyloceanib... [more]
UPI000E5BF04F9.010e-3360.19NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Aquaba... [more]
K0HYK4_9BURK1.060e-3260.19FAD dependent oxidoreductase n=12 Tax=Acidovorax T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149522contigH-elongata_contig149522:464..1169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue3.8e-31
Seed eggNOG ortholog2880.D8LN34
KEGG koko:K10742,ko:K14327,ko:K20298
KEGG Pathwayko03013,ko03015,ko03030,map03013,map03015,map03030
KEGG ModuleM00430
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003973,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016899,GO:0036094,GO:0043167,GO:0043168,GO:0047545,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071949,GO:0097159,GO:1901265,GO:1901363
EggNOG free text desc.2-hydroxyglutarate dehydrogenase activity
EggNOG OGsCOG0579@1,KOG2665@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03032,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149522.3312.1prot_H-elongata_contig149522.3312.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149522 464..1142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.2079158-CDS-H-elongata_contig149522:463..6441622929884.2079158-CDS-H-elongata_contig149522:463..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149522 464..644 -
1691679194.759347-CDS-H-elongata_contig149522:463..6441691679194.759347-CDS-H-elongata_contig149522:463..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149522 464..644 -
1622929884.2206042-CDS-H-elongata_contig149522:1041..11421622929884.2206042-CDS-H-elongata_contig149522:1041..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149522 1042..1142 -
1691679194.7714376-CDS-H-elongata_contig149522:1041..11421691679194.7714376-CDS-H-elongata_contig149522:1041..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149522 1042..1142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.2332022-UTR-H-elongata_contig149522:1142..11691622929884.2332022-UTR-H-elongata_contig149522:1142..1169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149522 1143..1169 -
1691679194.7815874-UTR-H-elongata_contig149522:1142..11691691679194.7815874-UTR-H-elongata_contig149522:1142..1169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149522 1143..1169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149522.3312.1

>prot_H-elongata_contig149522.3312.1 ID=prot_H-elongata_contig149522.3312.1|Name=mRNA_H-elongata_contig149522.3312.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MVGQGTTSRNSEVIHAGLYYEPGSIKAQLCVRGREALYDYCSERGVPHDR
CGKLVVASTRAQRPALKDLHARAVANRVMDARLVGSEEVREMEP
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mRNA from alignment at H-elongata_contig149522:464..1169-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149522.3312.1 ID=mRNA_H-elongata_contig149522.3312.1|Name=mRNA_H-elongata_contig149522.3312.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=706bp|location=Sequence derived from alignment at H-elongata_contig149522:464..1169- (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGGTCTGCGAACGGGAAGGCATGGTAGGACAAGGCACCACCTC
AAGGAACTCCGAGGTGATCCATGCCGGCTTGTACTACGAGCCTGGGTCGA
TAAAGGCGCAGCTCTGCGTCCGGGGCAGGTGTGAATCGTTGGGCTTGGTC
CCACTGCCTGTATATTTCGTTTTTTAATGCGTCAGTGATAATTTGATAAA
TAATTTGATACAATTTGAGCAATCTCGTGAGACTGACCTCAATTATCTAA
GCCACCCATATTTCGTTCACCATATGTACCTTTTACAAGGCAAAATCACT
CGATGGTTTATTTGAAAACTCTTGAAAAACCATCCAAGCATGCACGTCGC
ATTTTACAGCATCAGTACACAATACACAGTACACGGACGCGGTCTTAAGG
ACGAGGTCATAGCTTCTAGCTCTCCTGCGCCTTAAGAACATATTCGGAAC
AACGTTGTAAAAAACCCCTCCCTGTACCACACTTTCCCGTATCGACCCTC
CCGAACGGCCATCTTCCGTATGCAGAGAGGCCCTGTACGACTACTGTTCG
GAGAGAGGCGTGCCGCATGATCGTTGCGGCAAGCTCGTCGTAGCGTCGAC
GCGCGCACAGCGGCCGGCGCTGAAGGACTTGCACGCCAGAGCGGTAGCGA
ACAGGGTCATGGACGCGAGGCTGGTGGGCTCGGAAGAGGTCAGGGAGATG
GAACCG
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Coding sequence (CDS) from alignment at H-elongata_contig149522:464..1169-

>mRNA_H-elongata_contig149522.3312.1 ID=mRNA_H-elongata_contig149522.3312.1|Name=mRNA_H-elongata_contig149522.3312.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig149522:464..1169- (Himanthalia elongata Himel1 dioecious)
ATGGTAGGACAAGGCACCACCTCAAGGAACTCCGAGGTGATCCATGCCGG
CTTGTACTACGAGCCTGGGTCGATAAAGGCGCAGCTCTGCGTCCGGGGCA
GATGGTAGGACAAGGCACCACCTCAAGGAACTCCGAGGTGATCCATGCCG
GCTTGTACTACGAGCCTGGGTCGATAAAGGCGCAGCTCTGCGTCCGGGGC
AGAGAGGCCCTGTACGACTACTGTTCGGAGAGAGGCGTGCCGCATGATCG
TTGCGGCAAGCTCGTCGTAGCGTCGACGCGCGCACAGCGGCCGGCGCTGA
AGGACTTGCACGCCAGAGCGGTAGCGAACAGGGTCATGGACGCGAGGCTG
GTGGGCTCGGAAGAGGTCAGGGAGATGGAACCGAGAGGCCCTGTACGACT
ACTGTTCGGAGAGAGGCGTGCCGCATGATCGTTGCGGCAAGCTCGTCGTA
GCGTCGACGCGCGCACAGCGGCCGGCGCTGAAGGACTTGCACGCCAGAGC
GGTAGCGAACAGGGTCATGGACGCGAGGCTGGTGGGCTCGGAAGAGGTCA
GGGAGATGGAACCG
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