mRNA_H-elongata_contig149468.3309.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149468.3309.1
Unique NamemRNA_H-elongata_contig149468.3309.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: D7FZH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZH3_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.700e-56
Identity = 80/146 (54.79%), Postives = 115/146 (78.77%), Query Frame = 1
Query:    1 SMADWTAFTTIGTLYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMSQWCR 438
            S+ DW+AFT +G +++GT+LH W+ FLE +  S+V+ +R+K+K+GRVVLQV +D TIGA+++N+G FA +T+ +A LTGR  PLP+L S++  +V+S +  MMM N +LWPWVSF+NF ++PA  RVLV+N VAV W YLMS+WCR
Sbjct:  144 SLVDWSAFTLVGAVFIGTVLHHWYGFLERMGNSEVITSRIKSKWGRVVLQVVLDQTIGASLVNSGYFACHTVCLAGLTGRAFPLPELGSSIVEKVTSRYVVMMMNNFRLWPWVSFVNFAFIPADLRVLVSNFVAVLWGYLMSKWCR 289          
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A7S2SVB6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVB6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.000e-20
Identity = 46/129 (35.66%), Postives = 74/129 (57.36%), Query Frame = 1
Query:   40 LYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
            L+LG  LH WFNF++ + +   +    K+   RV++Q  +D T+G   +N G F    +L   L G L PL         +++S  W  ++ N +LWP  +++NF++VP K+RVL +N VAVFW+  +S
Sbjct:  130 LFLGPSLHYWFNFIDYVGKLPAIAKLKKSV--RVLVQTFVDQTVGVVTINGGFFFFFAVLQNTLDGTLFPLTRTLGQGWEKITSLMWVTLLANWRLWPLANWVNFQFVPLKYRVLFSNFVAVFWSIYLS 256          
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A7S0UHY9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UHY9_HEMAN)

HSP 1 Score: 71.6 bits (174), Expect = 4.120e-12
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   67 WFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTI---LVAALTGRLSPLPDLWSA--------VRH---RVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMSQ 429
            W+  +ES     +       KF R +L+  +D T+ +  + T  F   T+   L+A L  +++ LP + S         V H   +V+ N W  ++EN K+WP V  +NF  VP KF+VL  NLVA++WN+++S 
Sbjct:  149 WYGGMESALSQDI-------KF-RFLLKTALDQTVFSTGITTLTFMCITVVEGLLAPLEWKMNALPRITSQSVLPLTTLVDHGWTKVTRNLWETLLENWKVWPAVQLLNFSVVPVKFQVLFVNLVAIWWNFVLSM 275          
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: UPI001E8CB821 (uncharacterized protein n=1 Tax=Boeremia exigua TaxID=749465 RepID=UPI001E8CB821)

HSP 1 Score: 66.6 bits (161), Expect = 6.590e-11
Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = 1
Query:   34 GTLYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
            G L  G     W+  L              +K G +V +V  D  + A + N G+F  +   +A L G         S++R R+ + + P + +N  +WPWV F+NF+YVPA  RVLV N++++ WN  +S
Sbjct:   26 GGLIFGPAATTWYGLLTR-------HVNFASKNGTIVARVACDQLLFAPV-NMGLFLSS---MAYLEG---------SSIRDRLGAAYVPGLTKNFMVWPWVQFVNFKYVPADLRVLVVNVISLGWNCYLS 136          
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A162YUK6_DIDRA (Integral component of membrane n=1 Tax=Didymella rabiei TaxID=5454 RepID=A0A162YUK6_DIDRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.870e-11
Identity = 41/131 (31.30%), Postives = 67/131 (51.15%), Query Frame = 1
Query:   34 GTLYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
            G +  G     W+  L            + +K G +V +V  D  + A + N G+F  +   +A L G         S+V+ R++S + P + +N  +WPWV F+NF+YVPA  RVLV N++++ WN  +S
Sbjct:  137 GGIIFGPAATTWYGILTK-------HVNLSSKNGTIVARVACDQFLFAPV-NMGLFLTS---MAYLEG---------SSVKDRLNSAYVPGLTKNFMVWPWVQFVNFKYVPADLRVLVVNVISLGWNCYLS 247          
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A8H7IWD6_9PLEO (Uncharacterized protein n=2 Tax=Didymellaceae TaxID=683158 RepID=A0A8H7IWD6_9PLEO)

HSP 1 Score: 67.0 bits (162), Expect = 8.070e-11
Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 1
Query:   34 GTLYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
            G +  G     W+  L            + +K G ++ +V  D  + A + N G+F  +   +A L G         S+V+ R++S + P + +N  +WPWV F+NF+YVPA  RVLV N++++ WN  +S
Sbjct:   57 GGVIFGPAATTWYGILTK-------HVNLSSKNGTILARVACDQFLFAPV-NMGLFLTS---MAYLEG---------SSVKERLNSAYVPGLTKNFMVWPWVQFVNFKYVPADLRVLVVNVISLGWNCYLS 167          
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A0U5FUK1_ASPCI (Uncharacterized protein n=1 Tax=Aspergillus calidoustus TaxID=454130 RepID=A0A0U5FUK1_ASPCI)

HSP 1 Score: 65.9 bits (159), Expect = 1.660e-10
Identity = 43/145 (29.66%), Postives = 66/145 (45.52%), Query Frame = 1
Query:   28 TIGTLYLGTLLHIWFNFLES------------LAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
            T   L L  L  +W   LES              ++K  + + K      V ++ +D  IG A         NT+   A  G L      +  ++ ++ ++FWP+M+  LKLWP+VS +NF  VPA  R+LV +L  V W   +S
Sbjct:   47 TTSALILSPLSFLWLEGLESRFPSFINDKPTATGKAKTNKKKPKLNVRNTVAKIIVDQVIGGAW--------NTVAFIATMGLLRGQD--YEVIKGQIQNDFWPIMLAGLKLWPFVSILNFTVVPADKRLLVGSLFGVVWGIYLS 181          
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A1Y2MAH0_EPING (Uncharacterized protein n=1 Tax=Epicoccum nigrum TaxID=105696 RepID=A0A1Y2MAH0_EPING)

HSP 1 Score: 65.9 bits (159), Expect = 2.190e-10
Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  124 TKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
            +K G +V +V  D  + A + N G+F ++T+  A L G         S+VR R++  + P + +N  +WPWV F+NF+YVPA  RVLV N++++ WN  +S
Sbjct:   80 SKNGTIVARVACDQLVFAPV-NMGLF-LSTM--AYLEG---------SSVRDRLAQAYVPGLTKNFMVWPWVQFVNFKYVPADLRVLVVNVISLGWNCYLS 167          
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A5M3Z2N4_ASPTE (Integral membrane protein n=1 Tax=Aspergillus terreus TaxID=33178 RepID=A0A5M3Z2N4_ASPTE)

HSP 1 Score: 65.1 bits (157), Expect = 3.250e-10
Identity = 42/136 (30.88%), Postives = 64/136 (47.06%), Query Frame = 1
Query:   55 LLHIWFNFLESLAQSKVVRTRVKTKFGR------------VVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
            L+ +W   LE      V   R K+K                V+++ +D T+GA          NT+L  A  G L    + + A+  ++ ++FWPM++  LKLWP VS +NF  VP   R+LV +L  V W   +S
Sbjct:   56 LMFLWGEGLEKAFPGSVESERTKSKTDNDKTQKPRLNVKNTVVKITIDQTVGAVW--------NTVLFIATLGLLRG--EAFEAILDQIRTDFWPMVIAGLKLWPLVSIMNFTVVPVDQRLLVGSLFGVVWAVYLS 181          
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A1L9S9L5_9EURO (Uncharacterized protein n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9S9L5_9EURO)

HSP 1 Score: 64.7 bits (156), Expect = 4.240e-10
Identity = 41/134 (30.60%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   55 LLHIWFNFLES--------LAQSKVVRTRVKTKFG--RVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
            L+ +W N LE+          +++   T+ KT+      V +V +D T+G A +     A+    + AL G+     D +  +  ++ ++FWP+M+  LK+WP+VS +NF  VPA  R+LV +L  V W   +S
Sbjct:   54 LIFLWLNGLEAQFPGTTTTTTKTEKGETQKKTQLNVPNTVAKVVLDQTVGGAWIT----ALFIATMGALRGQ-----D-YGLIMEQIKTDFWPIMIAGLKMWPFVSILNFTVVPADQRLLVNSLFGVIWAVYLS 177          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZH3_ECTSI1.700e-5654.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SVB6_9STRA1.000e-2035.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0UHY9_HEMAN4.120e-1232.59Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
UPI001E8CB8216.590e-1131.30uncharacterized protein n=1 Tax=Boeremia exigua Ta... [more]
A0A162YUK6_DIDRA7.870e-1131.30Integral component of membrane n=1 Tax=Didymella r... [more]
A0A8H7IWD6_9PLEO8.070e-1130.53Uncharacterized protein n=2 Tax=Didymellaceae TaxI... [more]
A0A0U5FUK1_ASPCI1.660e-1029.66Uncharacterized protein n=1 Tax=Aspergillus calido... [more]
A0A1Y2MAH0_EPING2.190e-1037.62Uncharacterized protein n=1 Tax=Epicoccum nigrum T... [more]
A0A5M3Z2N4_ASPTE3.250e-1030.88Integral membrane protein n=1 Tax=Aspergillus terr... [more]
A0A1L9S9L5_9EURO4.240e-1030.60Uncharacterized protein n=1 Tax=Penicilliopsis zon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149468contigH-elongata_contig149468:203..1494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue7.9e-44
Seed eggNOG ortholog2880.D7FZH3
KEGG koko:K13348
KEGG Pathwayko04146,map04146
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorysignal peptide
Exons3
Model size441
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149468.3309.1prot_H-elongata_contig149468.3309.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149468 203..1491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.9429324-CDS-H-elongata_contig149468:202..3611622929883.9429324-CDS-H-elongata_contig149468:202..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149468 203..361 -
1691679194.657322-CDS-H-elongata_contig149468:202..3611691679194.657322-CDS-H-elongata_contig149468:202..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149468 203..361 -
1622929883.958073-CDS-H-elongata_contig149468:680..8761622929883.958073-CDS-H-elongata_contig149468:680..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149468 681..876 -
1691679194.6695647-CDS-H-elongata_contig149468:680..8761691679194.6695647-CDS-H-elongata_contig149468:680..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149468 681..876 -
1622929883.9689493-CDS-H-elongata_contig149468:1408..14911622929883.9689493-CDS-H-elongata_contig149468:1408..1491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149468 1409..1491 -
1691679194.6806266-CDS-H-elongata_contig149468:1408..14911691679194.6806266-CDS-H-elongata_contig149468:1408..1491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149468 1409..1491 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.9825542-UTR-H-elongata_contig149468:1491..14941622929883.9825542-UTR-H-elongata_contig149468:1491..1494Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149468 1492..1494 -
1691679194.6905487-UTR-H-elongata_contig149468:1491..14941691679194.6905487-UTR-H-elongata_contig149468:1491..1494Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149468 1492..1494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149468.3309.1

>prot_H-elongata_contig149468.3309.1 ID=prot_H-elongata_contig149468.3309.1|Name=mRNA_H-elongata_contig149468.3309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MADWTAFTTIGTLYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQV
GMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWP
MMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMSQWCR*
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mRNA from alignment at H-elongata_contig149468:203..1494-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149468.3309.1 ID=mRNA_H-elongata_contig149468.3309.1|Name=mRNA_H-elongata_contig149468.3309.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1292bp|location=Sequence derived from alignment at H-elongata_contig149468:203..1494- (Himanthalia elongata Himel1 dioecious)
AGCATGGCCGACTGGACGGCGTTCACCACCATCGGGACGCTCTACCTCGG GACGCTCCTCCACATCTGGTTCAACTTCTTGGAAAGGTGAGGTGGCCCCC CACTGTATGGGAACCACTGGACTGTCATAGTTGGATAACGGCTGTATGGG AGCTACTGGCGACTCGCTGCGAAGGCACTGTTTTCCGATAGTGGTTTTAG CTCGTTTTAATATTATTATTATTATTTTCTTTTTCTTCAAATAAACAGAA ATCTGACTCCTAGCGAGCGATCCCGGATTTGACACGCTCTGGTAAAAAGA CGTGCGCGGACCTAAAGCGATCCGGTTAAATCAGGTTCAGTATATTTTGA AGGGCAAAGAGCACCATTCAGCGGTAATGAATAGTGTACTACTAATATAT TCCCTTAAGGCAGGCCTGTATCCGATAGAGCATTGTATTCCGGGGGAAAG CCTTTTCCGTGGTACTCTGGTAATCTACATTCACAAGTTGTGGAAGTACT GGCAACCATGCCCCGACCAGCATTATTTTATAGATCAGAAAAACTGCCCG CTGACTATTTAGATACGGTGGCACATACCCCCTACGCCCCCCCCCCCCGC GCACTCGACGCAATCCAGTCTTGCCCAATCGAAGGTGGTGAGGACTAGGG TGAAGACCAAGTTCGGGAGGGTGGTTCTGCAGGTCGGCATGGACTCGACA ATCGGCGCGGCCATGTTAAACACGGGAGTCTTCGCGATCAATACGATATT AGTCGCGGCGTTGACCGGACGTTTGTCCCCGCTCCCAGACCTCTGGTCGG CCGTCCGACACAGGGTGCGTCCCCTCCCATAGATTCGTGCAACCTGCTAC TCTAACAACACGGTATTTCTATGACGCGCACGCACGCCCTCAGCATATTT TTTCAGAAGGGGCCTCCTTGAATGTCCTCCCACCGCACCGACTTGTTTAT CGGCAAGTGCTCTTCATCGAATCCAACGTCGCCGAACGTACTTCCGTGGT CCAACAGGCCTGCGATTTTTCAGTTATTTTCACAACCAGAATCGTCGCCA TCATACGATGGTGTTATCGTGGGAAAAAGGCCCCGAAACGTTTGCCCCCC CCCTACTTCCCCTCCCTCGCGACCGCCAAACAGGTCTCGAGCAATTTTTG GCCTATGATGATGGAAAACTTGAAGCTCTGGCCGTGGGTTAGCTTCATCA ACTTCCGCTACGTTCCCGCCAAGTTCAGGGTCCTTGTGACGAACCTGGTT GCAGTTTTCTGGAACTACCTCATGTCGCAGTGGTGCAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig149468:203..1494-

>mRNA_H-elongata_contig149468.3309.1 ID=mRNA_H-elongata_contig149468.3309.1|Name=mRNA_H-elongata_contig149468.3309.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig149468:203..1494- (Himanthalia elongata Himel1 dioecious)
ATGGCCGACTGGACGGCGTTCACCACCATCGGGACGCTCTACCTCGGGAC
GCTCCTCCACATCTGGTTCAACTTCTTGGAAAGATGGCCGACTGGACGGC
GTTCACCACCATCGGGACGCTCTACCTCGGGACGCTCCTCCACATCTGGT
TCAACTTCTTGGAAAGTCTTGCCCAATCGAAGGTGGTGAGGACTAGGGTG
AAGACCAAGTTCGGGAGGGTGGTTCTGCAGGTCGGCATGGACTCGACAAT
CGGCGCGGCCATGTTAAACACGGGAGTCTTCGCGATCAATACGATATTAG
TCGCGGCGTTGACCGGACGTTTGTCCCCGCTCCCAGACCTCTGGTCGGCC
GTCCGACACAGGTCTTGCCCAATCGAAGGTGGTGAGGACTAGGGTGAAGA
CCAAGTTCGGGAGGGTGGTTCTGCAGGTCGGCATGGACTCGACAATCGGC
GCGGCCATGTTAAACACGGGAGTCTTCGCGATCAATACGATATTAGTCGC
GGCGTTGACCGGACGTTTGTCCCCGCTCCCAGACCTCTGGTCGGCCGTCC
GACACAGGGTCTCGAGCAATTTTTGGCCTATGATGATGGAAAACTTGAAG
CTCTGGCCGTGGGTTAGCTTCATCAACTTCCGCTACGTTCCCGCCAAGTT
CAGGGTCCTTGTGACGAACCTGGTTGCAGTTTTCTGGAACTACCTCATGT
CGCAGTGGTGCAGATGAGTCTCGAGCAATTTTTGGCCTATGATGATGGAA
AACTTGAAGCTCTGGCCGTGGGTTAGCTTCATCAACTTCCGCTACGTTCC
CGCCAAGTTCAGGGTCCTTGTGACGAACCTGGTTGCAGTTTTCTGGAACT
ACCTCATGTCGCAGTGGTGCAGATGA
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