mRNA_H-elongata_contig14938.3307.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: D7FPF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF1_ECTSI) HSP 1 Score: 345 bits (884), Expect = 7.530e-117 Identity = 178/224 (79.46%), Postives = 196/224 (87.50%), Query Frame = 1
Query: 31 VQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKRSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLKNAS 702
++RGL VEPRN DLKKNLKEI+ELIR +KVSQ V QA++QLK GDYG A+K +AGMRLDAGN DLQ V DRAKP+FEAAER+R+SGLS T LLKEKGDDFY+KASFEDAI KYTECL+ LPDKRS LAIKCYSNR+ACYKQLSNFDATVEDTTAV+EVEP NVKALVRRA YRFALQDVRTVL+MP D+VG+ANLSLANGMQHRL RVVQQLKNAS
Sbjct: 97 IKRGLCVEPRNADLKKNLKEIDELIRGEKVSQFVAQAEAQLKAGDYGAAMKAVEAGMRLDAGNKDLQAVQDRAKPKFEAAERSRKSGLSSTALLKEKGDDFYRKASFEDAIVKYTECLDSLPDKRSELAIKCYSNRSACYKQLSNFDATVEDTTAVLEVEPENVKALVRRA--------YRFALQDVRTVLTMPQDKVGSANLSLANGMQHRLNRVVQQLKNAS 312
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A836CLV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV7_9STRA) HSP 1 Score: 336 bits (861), Expect = 3.080e-113 Identity = 166/225 (73.78%), Postives = 198/225 (88.00%), Query Frame = 1
Query: 28 SVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKRSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLKNAS 702
++ RGLAVEPRN DLKKNLKEI+EL+RADKV++L+ QA++ LK GDYG AVK CD+ +RLDAGNSD+Q +L A+P+FEA E+AR+SGLS TE LKE+GDDFYK+A FEDAI KYT+C++ L D+ LA+KC+SNR+ACYKQLSNFD +EDT+AV+EVEP NVKALVRRAQAFEAIERYR+ALQDVRTVL+MPPDQVGAAN+SLANGMQHRL RVVQQLK S
Sbjct: 96 TLNRGLAVEPRNADLKKNLKEIDELLRADKVAKLIGQAETALKLGDYGDAVKLCDSALRLDAGNSDVQRILRVAQPKFEAQEKARKSGLSRTEHLKEEGDDFYKRAQFEDAIKKYTQCIDALGDRHHALALKCFSNRSACYKQLSNFDGVIEDTSAVLEVEPGNVKALVRRAQAFEAIERYRYALQDVRTVLAMPPDQVGAANISLANGMQHRLNRVVQQLKQDS 320
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A6V1KEM3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KEM3_HETAK) HSP 1 Score: 285 bits (730), Expect = 2.350e-93 Identity = 144/225 (64.00%), Postives = 179/225 (79.56%), Query Frame = 1
Query: 28 SVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKRSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLKNAS 702
++++GLA++P+N DLKK + ++EE IR KV + QA++ K GDYG AV++ + G+RLDAGNS L +++DR +P +EA E++RR+GLS TE LKE+GDD YK A+FE AI KYT+CL+ L DK S LAIKCYSNR+ACYKQLSNFD + D T VIE +P NVKALVRRAQAFEA ERYRFALQDVRTVL+ P + VG AN LANGMQHRL RVVQQLK+AS
Sbjct: 96 TLRQGLAIQPQNADLKKLVSDVEEEIRLKKVETFLQQAQAHNKAGDYGAAVRSLENGLRLDAGNSQLTSLMDRVRPLWEAEEKSRRAGLSRTEQLKEQGDDCYKAANFEGAIQKYTQCLDALSDKSSELAIKCYSNRSACYKQLSNFDGVISDCTMVIEAQPENVKALVRRAQAFEACERYRFALQDVRTVLAQPFELVGQANYQLANGMQHRLNRVVQQLKSAS 320
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S2DVE1_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2DVE1_9STRA) HSP 1 Score: 264 bits (674), Expect = 8.100e-85 Identity = 132/231 (57.14%), Postives = 177/231 (76.62%), Query Frame = 1
Query: 10 LSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDK---RSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
L+ C +++ GLAV+ N DLK+ KE++EL+R ++V+ ++A+ Q+++GD GA KT + R+DAGN D++ ++ R KP++EA E R++GLS TE+ KE+GD+ YKKA FE AI +YT+C++ L +S LA+K YSNRAACYKQ+SNFD TVED TAV+EV+P NVKAL+RRAQA E +ERYRFALQD++TVLSMP D+VG AN LANGMQHRL R VQQLK
Sbjct: 91 LAGCIKTLESGLAVQSSNPDLKRMKKEVQELLRGEQVAGYCSRAEEQMQSGDIAGAYKTLELASRIDAGNPDIERMMSRVKPKYEAMEARRKAGLSATEIYKERGDERYKKADFEGAIEEYTKCIDTLRADGKGQSELAMKAYSNRAACYKQISNFDGTVEDCTAVLEVDPENVKALIRRAQALEGLERYRFALQDIKTVLSMPFDKVGKANFDLANGMQHRLNRTVQQLK 321
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S3P6E4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6E4_9STRA) HSP 1 Score: 259 bits (663), Expect = 3.860e-83 Identity = 132/231 (57.14%), Postives = 170/231 (73.59%), Query Frame = 1
Query: 10 LSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKR---SPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
L C +++ GLA+E N DLKK K+++E++R ++V+ QA+ Q + G G A+KT + RLDAGN +Q + + KP F+ E+AR++ LSG EL KEKGD+ YK A FE+AI++YT+CL +L K SPLA+K YSNRAACYKQ+SNFD T+ D TAV+EVEP+NVKAL+RRAQAFE +ERYRFALQDV+TVL MP QVG AN L NGMQHRL+R V QLK
Sbjct: 90 LDGCTKTLESGLAIEASNPDLKKMKKDVQEMLRQEQVAGYAKQAEEQFRGGQIGEAMKTLELASRLDAGNPTIQALQAKVKPAFDKQEKARKAKLSGAELYKEKGDECYKNAQFENAIAEYTKCLKQLESKGQQGSPLAVKTYSNRAACYKQISNFDGTIADCTAVLEVEPDNVKALIRRAQAFEGVERYRFALQDVKTVLQMPSAQVGKANFDLCNGMQHRLQRTVNQLK 320
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S1CX05_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CX05_CYCTE) HSP 1 Score: 256 bits (653), Expect = 1.180e-81 Identity = 130/232 (56.03%), Postives = 170/232 (73.28%), Query Frame = 1
Query: 7 RLSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDK---RSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
+L+ C +++ GLAV+ N DLK+ KEI+E R D+V +A+ Q++ GD GA+KT + RLDAGN ++ + R +P+F+ ER R+S LS TEL KEKGD++YK A+FE AI +YT+CL+ L + SPLA+K YSNRAACYKQ+SNFD T+ D T V+E+EP NVKAL+RRAQAFE +ERYRFALQD++TVLSMP +VG +N L NGMQHRL R VQQLK
Sbjct: 89 QLAECIKTLESGLAVQSSNPDLKRMKKEIQEQQRHDQVKAYCAKAEEQMQNGDIAGAMKTLELASRLDAGNPSVEAMKKRVQPKFDQMERQRKSSLSATELYKEKGDEYYKAANFELAIEEYTKCLDNLQKEGKAESPLALKAYSNRAACYKQISNFDGTISDCTMVLEIEPENVKALIRRAQAFEGVERYRFALQDIKTVLSMPFAKVGKSNFDLCNGMQHRLNRTVQQLK 320
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S4K7I6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K7I6_9STRA) HSP 1 Score: 249 bits (637), Expect = 1.240e-78 Identity = 125/234 (53.42%), Postives = 172/234 (73.50%), Query Frame = 1
Query: 1 MPRLSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDK---RSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
M ++ C +++ GLAV+ N DLKK K+++EL R ++V+ +A+ Q+++GD GA KT + RLDAGN D++ ++ + KP+FEA E R++GLS TE+ KE+GD+ YK A+FE A+ Y +C+ L + +S LA+K +SNRAACYKQ+SNFD +ED TAV+E+EP NVKAL+RRAQAFE +ERYRFALQDV+TVL+MP D+VG +N L N MQHRL R VQQLK
Sbjct: 133 MNDIAGCIKTLESGLAVQSSNPDLKKMKKDVQELQRGEQVASYCRKAEEQMQSGDIPGAYKTLELASRLDAGNPDIERMMSKVKPKFEAMESRRKAGLSSTEIFKERGDEAYKSANFEGAVELYGKCIEGLKREGKDQSELALKAHSNRAACYKQISNFDGVIEDCTAVLEIEPENVKALIRRAQAFEGVERYRFALQDVKTVLAMPFDKVGKSNFDLCNMMQHRLNRTVQQLK 366
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S0ACZ8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ACZ8_9STRA) HSP 1 Score: 245 bits (626), Expect = 1.570e-78 Identity = 127/234 (54.27%), Postives = 167/234 (71.37%), Query Frame = 1
Query: 1 MPRLSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKR---SPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
M L C +++ GLA++ N DLKK K+I EL R ++V+ +A Q++ GD GA KT + RLDAGN D++ ++ + KPR+E E R++GLSG E KEKGD+ YK A+FE A+ +YT+CLN L + S LA+K +SNRAACYKQ+SNFD T+ED TAV+E++P+NVKAL+RRAQAFE +ERYRFALQDV+ VLSMP +VG N L N MQHRL+R V QLK
Sbjct: 17 MNDLDGCIKTLESGLAIQSSNPDLKKMKKDIAELQRGEQVASYCRKADEQMQGGDIAGAYKTLELASRLDAGNPDIERMMSKVKPRYEKMEAQRKAGLSGAEAHKEKGDEKYKNANFEGAVEEYTKCLNDLKKEGKELSELALKAHSNRAACYKQISNFDGTIEDCTAVLEIDPDNVKALIRRAQAFEGMERYRFALQDVKQVLSMPYHKVGKQNFELCNMMQHRLQRTVNQLK 250
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S1VMY9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMY9_9STRA) HSP 1 Score: 247 bits (631), Expect = 2.510e-78 Identity = 128/231 (55.41%), Postives = 165/231 (71.43%), Query Frame = 1
Query: 10 LSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDK---RSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
L C +++ GL V+ N DLK+ KEI+E R +V T+A+ Q++ GD G++KT D RLDAGN L+ ++ + KP++EA E R++ LSG EL KEKGD+ YK A+FE AI+ Y++ L+ L + SP+A+K YSNRAACYKQ+SNFD T+ D TAV+EVEP NVKAL+RRAQAFE +ERYRFALQDV+TVL MP +VG AN L NGMQHRL R V QLK
Sbjct: 90 LPACIKTLENGLGVQSTNPDLKRMKKEIQESQRQAQVKAYCTKAEEQMQNGDIAGSMKTLDLASRLDAGNPQLEAMIGKVKPKYEAMEAKRKANLSGPELWKEKGDEEYKAANFEGAITHYSKALSALENSGKASSPIALKAYSNRAACYKQISNFDGTISDCTAVLEVEPENVKALIRRAQAFEGVERYRFALQDVKTVLQMPFHKVGKANFDLCNGMQHRLNRTVAQLK 320
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Match: A0A7S1BD40_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BD40_9STRA) HSP 1 Score: 246 bits (627), Expect = 8.920e-78 Identity = 125/222 (56.31%), Postives = 161/222 (72.52%), Query Frame = 1
Query: 28 SVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQLKTGDYGGAVKTCDAGMRLDAGNSDLQTVLDRAKPRFEAAERARRSGLSGTELLKEKGDDFYKKASFEDAISKYTECLNRLPDKRSPLAIKCYSNRAACYKQLSNFDATVEDTTAVIEVEPNNVKALVRRAQAFEAIERYRFALQDVRTVLSMPPDQVGAANLSLANGMQHRLKRVVQQLK 693
+++ GL + N DLKK ++ E RADKVS +A Q+ GD GA KT + RL AGN +++ ++ + +PR+EA ER R++GLSGTE LKEKGD+ YK A FE+A+ Y++CL+ L + S LAIKC SNRAACYKQ+SNFD T+ D T V+EVEP NVKALVRRAQAFEA+E+YR+ALQDV+ VLSMP + +G N L NG+QHRL RVV QLK
Sbjct: 96 TLEEGLVYDANNKDLKKMKADLVEKQRADKVSSYCRKADEQMANGDIPGAYKTLELASRLGAGNVEIERMMSKVRPRYEAIERKRKAGLSGTEGLKEKGDEAYKAAQFENAVCFYSKCLDSLGEFSSSLAIKCLSNRAACYKQISNFDGTISDCTYVLEVEPENVKALVRRAQAFEAVEKYRYALQDVKQVLSMPFNSIGRVNYELCNGLQHRLNRVVAQLK 317 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14938.3307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14938.3307.1 >prot_H-elongata_contig14938.3307.1 ID=prot_H-elongata_contig14938.3307.1|Name=mRNA_H-elongata_contig14938.3307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp MPRLSFCHFSVQRGLAVEPRNVDLKKNLKEIEELIRADKVSQLVTQAKSQback to top mRNA from alignment at H-elongata_contig14938:210..2380+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14938.3307.1 ID=mRNA_H-elongata_contig14938.3307.1|Name=mRNA_H-elongata_contig14938.3307.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2171bp|location=Sequence derived from alignment at H-elongata_contig14938:210..2380+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14938:210..2380+ >mRNA_H-elongata_contig14938.3307.1 ID=mRNA_H-elongata_contig14938.3307.1|Name=mRNA_H-elongata_contig14938.3307.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig14938:210..2380+ (Himanthalia elongata Himel1 dioecious)back to top |