mRNA_H-elongata_contig149316.3304.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149316.3304.1
Unique NamemRNA_H-elongata_contig149316.3304.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Match: D7FZG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZG0_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 4.660e-45
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 QTSQLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQECPFWEEDGQCMMRDCSVCECSREEIPKPWLEQVKAQSDKGQTPL 282
            +TSQLTGTV+DCCVDYSTVD ATKSSFMPLL +LQ+R FFKY+KVNL +ECPFWEEDGQCMMRDCSVCECS EEIPKPWLE+ +  S KG   +
Sbjct:   67 KTSQLTGTVDDCCVDYSTVDTATKSSFMPLLTKLQKRNFFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIPKPWLEEDERSSAKGAVDV 160
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BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Match: A0A835YS22_9STRA (Putative endoplasmic oxidoreductin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS22_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.970e-33
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 QTSQLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQECPFWEEDGQCMMRDCSVCECSREEIPKPWLEQVKAQSDK-GQTPLFFL 291
            +TSQLTGTV DCC+++ TVD AT+  F+PLL  LQ   FFKY+KV+L + CPFW+EDGQCM RDCSVCEC  +EIPK WLE+     DK  QTP+  L
Sbjct:   42 KTSQLTGTVGDCCIEFDTVDHATRDFFLPLLTSLQRTTFFKYFKVDLNKPCPFWQEDGQCMYRDCSVCECDPKEIPKKWLEE----DDKLKQTPISKL 135
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BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Match: A0A1W0A9D1_9STRA (Endoplasmic oxidoreductin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9D1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.580e-27
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 QTSQLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQECPFWEEDGQCMMRDCSVCECSREEIPKPWLEQVKAQSDKGQTPL 282
            +T +LTGTV D C +Y TVD AT++ F PLL +L+   FF+YYK +L +ECPFW  + QC  RDCSVCECS+EEIP  W EQ  A  +  +  L
Sbjct:   39 KTPELTGTVTDSCCNYETVDVATQAHFHPLLDELRTLSFFRYYKADLTKECPFWASNNQCANRDCSVCECSKEEIPAKWFEQDAAMREAKEKAL 132
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BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Match: T0S979_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S979_SAPDV)

HSP 1 Score: 108 bits (269), Expect = 3.760e-26
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    1 QTSQLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQECPFWEEDGQCMMRDCSVCECSREEIPKPWLEQVKAQSD 264
            +T +LTGTV D C +Y TVD AT++ F PLL +L+   FF+Y+K +L +ECPFW  + QC  RDCSVCEC++EEIP  W  Q +A  +
Sbjct:   43 KTPELTGTVTDSCCNYETVDVATQAHFHPLLDELRTLSFFRYFKADLTKECPFWHSNNQCANRDCSVCECAKEEIPAKWYAQDEAAKE 130
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BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Match: A0A1V9ZLB8_9STRA (Endoplasmic oxidoreductin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLB8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.190e-25
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 QTSQLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQECPFWEEDGQCMMRDCSVCECSREEIPKPWLEQVKAQSDKGQTPL 282
            +T +LTGTV D C +Y TVD AT++ F PLL +L+   FF+Y+K +L +ECPFW  + QC  RDCSVCEC +EEIP  W  Q +A  +  +  L
Sbjct:   42 KTPELTGTVTDSCCNYETVDIATQAHFHPLLDELRTLSFFRYFKADLTKECPFWHSNNQCANRDCSVCECPKEEIPSKWYAQDEAAREAREAEL 135
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BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Match: A0A067DAD7_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067DAD7_SAPPC)

HSP 1 Score: 108 bits (269), Expect = 1.560e-25
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:    1 QTSQLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQECPFWEEDGQCMMRDCSVCECSREEIPKPWLEQVKAQSD 264
            +T +LTGTV D C +Y TVD AT++ F PLL +L+   FF+Y+K +L +ECPFW  + QC  RDCSVCEC+++EIP  W  Q +A+ +
Sbjct:   43 KTPELTGTVTDSCCNYETVDVATQAHFHPLLDELRTLSFFRYFKADLTKECPFWHSNNQCANRDCSVCECAKDEIPAKWYAQDEAEKE 130
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BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Match: A0A6G0XA54_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XA54_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.480e-25
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:    1 QTSQLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQECPFWEEDGQCMMRDCSVCECSREEIPKPWLEQVKAQSDK 267
            +T +LTG+V+D C +Y TV+ AT + F PLL +L+   FF+Y+KV+L +ECPFW  +  CM RDCSVCECS +EIP  W EQ K + ++
Sbjct:   39 RTPELTGSVQDSCCNYETVNTATIAHFHPLLDELRTLSFFRYFKVDLNKECPFWRANNVCMNRDCSVCECSADEIPAKWYEQDKEEKER 127
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BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Match: A0A7S1CNX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNX9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.330e-24
Identity = 40/78 (51.28%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   10 QLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQECPFWEEDGQCMMRDCSVCECSREEIPKPWLE 243
            +L+GT++DCC D  TVD+  +  F+P+L+QL    +FKY+KV+L ++CPFW+EDG CM RDC+VCEC   EIP+  ++
Sbjct:   12 ELSGTIDDCCCDVETVDSTNEEHFLPILQQLTNTTYFKYFKVDLWRDCPFWQEDGMCMARDCAVCECDPNEIPQELID 89
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BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Match: A0A024UB18_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UB18_9STRA)

HSP 1 Score: 103 bits (257), Expect = 8.230e-24
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 QTSQLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQECPFWEEDGQCMMRDCSVCECSREEIPKPWLEQVKAQSDKGQT 276
            +T +LTG+V D C +Y TV+ AT   F PLL +L++  FF+Y+KV+L +ECPFW  +  CM RDCSVCEC  EEIP  W  Q +A+ ++ ++
Sbjct:   50 RTPELTGSVGDSCCNYETVNTATIEHFHPLLDELRKLSFFRYFKVDLNRECPFWSVNNVCMNRDCSVCECPSEEIPSKWYAQDQAEKEQRES 141
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BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Match: A0A485KZ54_9STRA (Aste57867_13825 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZ54_9STRA)

HSP 1 Score: 103 bits (257), Expect = 9.150e-24
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 QTSQLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQECPFWEEDGQCMMRDCSVCECSREEIPKPWLEQVKAQSDK 267
            +T +LTG+V D C +Y TV+ AT   F PLL +L+   FF+Y+KV+L +ECPFW  +  CM RDCSVCEC  EEIP  W  Q +A+ ++
Sbjct:   67 RTPELTGSVSDSCCNYETVNTATIEHFHPLLDELRTLSFFRYFKVDLSRECPFWNANSVCMNRDCSVCECPTEEIPSKWYAQDQAEKEQ 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149316.3304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZG0_ECTSI4.660e-4577.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YS22_9STRA6.970e-3361.22Putative endoplasmic oxidoreductin n=1 Tax=Tribone... [more]
A0A1W0A9D1_9STRA1.580e-2753.19Endoplasmic oxidoreductin n=1 Tax=Thraustotheca cl... [more]
T0S979_SAPDV3.760e-2652.27Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9ZLB8_9STRA1.190e-2550.00Endoplasmic oxidoreductin n=1 Tax=Achlya hypogyna ... [more]
A0A067DAD7_SAPPC1.560e-2551.14Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A6G0XA54_9STRA4.480e-2551.69Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1CNX9_9STRA1.330e-2451.28Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A024UB18_9STRA8.230e-2448.91Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A485KZ54_9STRA9.150e-2450.56Aste57867_13825 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149316contigH-elongata_contig149316:700..1424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue2.9e-37
Seed eggNOG ortholog2880.D7FZG0
Preferred nameERO1LB
KEGG koko:K10950,ko:K10976
KEGG Pathwayko04141,ko05110,map04141,map05110
GOsGO:0001666,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0006082,GO:0006457,GO:0006458,GO:0006464,GO:0006508,GO:0006518,GO:0006520,GO:0006575,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006915,GO:0006950,GO:0006979,GO:0006986,GO:0007154,GO:0007165,GO:0007204,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008219,GO:0008593,GO:0009266,GO:0009628,GO:0009966,GO:0009987,GO:0010033,GO:0010260,GO:0010467,GO:0010646,GO:0010817,GO:0012501,GO:0012505,GO:0015035,GO:0015036,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0016486,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0019471,GO:0019538,GO:0019725,GO:0019752,GO:0022417,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030070,GO:0030154,GO:0030176,GO:0030198,GO:0030425,GO:0030968,GO:0031224,GO:0031227,GO:0031974,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0033500,GO:0033554,GO:0034220,GO:0034599,GO:0034620,GO:0034641,GO:0034975,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036477,GO:0042175,GO:0042221,GO:0042445,GO:0042592,GO:0042593,GO:0042995,GO:0043005,GO:0043062,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045444,GO:0045454,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050873,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051179,GO:0051209,GO:0051234,GO:0051282,GO:0051283,GO:0051480,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0055114,GO:0060401,GO:0060402,GO:0061077,GO:0065007,GO:0065008,GO:0070013,GO:0070059,GO:0070482,GO:0070588,GO:0070838,GO:0070887,GO:0071310,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0097190,GO:0097193,GO:0097447,GO:0097458,GO:0097553,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098827,GO:0120025,GO:0120038,GO:0140096,GO:1901142,GO:1901564,GO:1901605
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsCOG5061@1,KOG2608@2759
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.6005056-CDS-H-elongata_contig149316:699..8091622929883.6005056-CDS-H-elongata_contig149316:699..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149316 700..809 +
1691679194.5249872-CDS-H-elongata_contig149316:699..8091691679194.5249872-CDS-H-elongata_contig149316:699..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149316 700..809 +
1622929883.6192102-CDS-H-elongata_contig149316:1231..14241622929883.6192102-CDS-H-elongata_contig149316:1231..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149316 1232..1424 +
1691679194.5383701-CDS-H-elongata_contig149316:1231..14241691679194.5383701-CDS-H-elongata_contig149316:1231..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149316 1232..1424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149316.3304.1prot_H-elongata_contig149316.3304.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149316 700..1424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149316.3304.1

>prot_H-elongata_contig149316.3304.1 ID=prot_H-elongata_contig149316.3304.1|Name=mRNA_H-elongata_contig149316.3304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
QTSQLTGTVEDCCVDYSTVDAATKSSFMPLLKQLQERIFFKYYKVNLLQE
CPFWEEDGQCMMRDCSVCECSREEIPKPWLEQVKAQSDKGQTPLFFLGGG
*
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mRNA from alignment at H-elongata_contig149316:700..1424+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149316.3304.1 ID=mRNA_H-elongata_contig149316.3304.1|Name=mRNA_H-elongata_contig149316.3304.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=725bp|location=Sequence derived from alignment at H-elongata_contig149316:700..1424+ (Himanthalia elongata Himel1 dioecious)
CAGACCTCTCAACTGACGGGAACCGTCGAGGACTGCTGCGTGGACTACAG
CACCGTCGACGCCGCGACGAAAAGTTCCTTTATGCCACTTCTCAAGCAGC
TTCAGGAGAGGTACGTAAGGTCGAGGGAAAGTTGAAGTCAGCGAAGAGCA
ACACGACCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTTTCGCCCGT
TGACGGTAGCTACGTGTGTACGTGTGTGCCATCACTCGCACGTAGGGGGA
GGATATTTTGTTTAATTTTCTCTCTAGCTGCTAAATGAAGCTAAAGCGAA
CGTTGCGCGAGTGAAAAGAAAGAGCTTTGTACTCTATTTTGAAGGTGTAC
GGGTGTTCATAGCTGTAATGAGGGGTCAAAAGATGGAAAGAGGTGCAGTC
CTTTTGGCACGACCCAGAGTATGAAGCCTAGGAATGCCGGTGTTTCTGAC
CCCCCGGACGCTTTTCAATCGGTTTTGCTTCTTTTCCCGGCCCCTCCCCC
CCCCCCCCCCCACACCGAATCCCTATTAATAGGATTTTCTTCAAGTACTA
CAAAGTGAATCTGTTACAGGAGTGCCCGTTCTGGGAAGAGGACGGGCAGT
GCATGATGCGAGACTGTAGCGTGTGCGAGTGCAGCCGGGAGGAAATTCCC
AAGCCGTGGCTAGAGCAGGTAAAGGCACAGAGTGACAAGGGGCAGACGCC
CTTGTTTTTTTTGGGGGGGGGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig149316:700..1424+

>mRNA_H-elongata_contig149316.3304.1 ID=mRNA_H-elongata_contig149316.3304.1|Name=mRNA_H-elongata_contig149316.3304.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig149316:700..1424+ (Himanthalia elongata Himel1 dioecious)
CAGACCTCTCAACTGACGGGAACCGTCGAGGACTGCTGCGTGGACTACAG
CACCGTCGACGCCGCGACGAAAAGTTCCTTTATGCCACTTCTCAAGCAGC
TTCAGGAGAGCAGACCTCTCAACTGACGGGAACCGTCGAGGACTGCTGCG
TGGACTACAGCACCGTCGACGCCGCGACGAAAAGTTCCTTTATGCCACTT
CTCAAGCAGCTTCAGGAGAGGATTTTCTTCAAGTACTACAAAGTGAATCT
GTTACAGGAGTGCCCGTTCTGGGAAGAGGACGGGCAGTGCATGATGCGAG
ACTGTAGCGTGTGCGAGTGCAGCCGGGAGGAAATTCCCAAGCCGTGGCTA
GAGCAGGTAAAGGCACAGAGTGACAAGGGGCAGACGCCCTTGTTTTTTTT
GGGGGGGGGTTAAGATTTTCTTCAAGTACTACAAAGTGAATCTGTTACAG
GAGTGCCCGTTCTGGGAAGAGGACGGGCAGTGCATGATGCGAGACTGTAG
CGTGTGCGAGTGCAGCCGGGAGGAAATTCCCAAGCCGTGGCTAGAGCAGG
TAAAGGCACAGAGTGACAAGGGGCAGACGCCCTTGTTTTTTTTGGGGGGG
GGTTAA
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