mRNA_H-elongata_contig149315.3303.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149315.3303.1
Unique NamemRNA_H-elongata_contig149315.3303.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: D7FK17_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.310e-11
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHE 120
            VKSWGTEGR E    IPP+D LH  V FRGEDIKDLHVHE
Sbjct:   39 VKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHE 78
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BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A6H5KDD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-11
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHE 120
            VKSWGTEGR E    IPP+D LH  V FRGEDIKDLHVHE
Sbjct:   39 VKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHE 78
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BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A835CZP5_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835CZP5_9MAGN)

HSP 1 Score: 55.8 bits (133), Expect = 7.450e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHEVRPCK 135
            VKS+GTEGR E+G  +PP+D+++E + FRG DIKDL V    P +
Sbjct:   49 VKSFGTEGRKEDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPVQ 93
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BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A6J1IHM2_CUCMA (protein decapping 5-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IHM2_CUCMA)

HSP 1 Score: 53.5 bits (127), Expect = 4.870e-7
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHEVRPCK 135
            V+S+GTEGR +EG  +PP+D++ E + FRG DIKDL V    P +
Sbjct:   50 VRSFGTEGRKQEGPQVPPSDKVFEFILFRGSDIKDLQVKSSPPVQ 94
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BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A8J5LFJ0_ZINOF (Uncharacterized protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LFJ0_ZINOF)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHV 114
            V+S+GTEGR ++G  IPP+D+++E + FRG DIKDL V
Sbjct:   49 VRSFGTEGRKQDGPQIPPSDKIYEYILFRGTDIKDLQV 86
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BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.290e-6
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHE 120
            VKSWGTE R E G  +P +D++   + FRG+DIKDLHVH+
Sbjct:   40 VKSWGTENRVE-GPQVPASDEIFGCIVFRGQDIKDLHVHD 78
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BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A1S3ZWV4_TOBAC (protein decapping 5-like isoform X4 n=3 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZWV4_TOBAC)

HSP 1 Score: 51.6 bits (122), Expect = 2.330e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHV 114
            VKS+GTEGR ++G  I P+D+++E + FRG DIKDL V
Sbjct:  105 VKSYGTEGRKQDGPQISPSDKIYEYIFFRGSDIKDLQV 142
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BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A1S3ZX97_TOBAC (protein decapping 5-like isoform X1 n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZX97_TOBAC)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHV 114
            VKS+GTEGR ++G  I P+D+++E + FRG DIKDL V
Sbjct:  105 VKSYGTEGRKQDGPQISPSDKIYEYIFFRGSDIKDLQV 142
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BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A388LKT5_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388LKT5_CHABU)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-6
Identity = 21/38 (55.26%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHV 114
            V+S+GTEGR ++G  IPP+D++++ + FRG DIKDL V
Sbjct:   49 VRSFGTEGRKQDGPEIPPSDKVYDYIIFRGSDIKDLQV 86
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BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A1Z5JPN3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPN3_FISSO)

HSP 1 Score: 51.2 bits (121), Expect = 3.090e-6
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 VKSWGTEGR--SEEG-MHIPPADQLHEMVQFRGEDIKDLHVHE 120
            VK++GTEGR  +EEG + + PAD +H  + FRG+DIKDLHVHE
Sbjct:   39 VKTFGTEGRELAEEGCIFVAPADTVHPYLLFRGQDIKDLHVHE 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FK17_ECTSI1.310e-1175.00Novel Sm-like protein with long N-and C-terminal d... [more]
A0A6H5KDD7_9PHAE1.600e-1175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835CZP5_9MAGN7.450e-853.33Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A6J1IHM2_CUCMA4.870e-751.11protein decapping 5-like n=3 Tax=Cucurbita TaxID=3... [more]
A0A8J5LFJ0_ZINOF6.670e-757.89Uncharacterized protein n=4 Tax=Zingiber officinal... [more]
A0A836C876_9STRA2.290e-657.50Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]
A0A1S3ZWV4_TOBAC2.330e-657.89protein decapping 5-like isoform X4 n=3 Tax=Nicoti... [more]
A0A1S3ZX97_TOBAC2.340e-657.89protein decapping 5-like isoform X1 n=5 Tax=Nicoti... [more]
A0A388LKT5_CHABU2.340e-655.26Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A0A1Z5JPN3_FISSO3.090e-660.47Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149315contigH-elongata_contig149315:564..698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog2880.D7FK17
Preferred nameLSM14A
KEGG koko:K18749
GOsGO:0000226,GO:0000242,GO:0000932,GO:0001817,GO:0001819,GO:0001959,GO:0001961,GO:0002218,GO:0002221,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006417,GO:0006446,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010647,GO:0015630,GO:0016043,GO:0017148,GO:0017151,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030522,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031349,GO:0031369,GO:0031370,GO:0032268,GO:0032269,GO:0032991,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0035556,GO:0035770,GO:0036464,GO:0039528,GO:0039529,GO:0043186,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044764,GO:0045088,GO:0045089,GO:0045169,GO:0045495,GO:0045947,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051233,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0060338,GO:0060340,GO:0060759,GO:0060760,GO:0065003,GO:0065007,GO:0070925,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0097159,GO:0098542,GO:0098586,GO:1901363,GO:1904688,GO:1904689,GO:1990124,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
EggNOG free text desc.cytoplasmic mRNA processing body assembly
EggNOG OGsKOG1073@1,KOG1073@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.5549414-CDS-H-elongata_contig149315:563..6981622929883.5549414-CDS-H-elongata_contig149315:563..698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149315 564..698 -
1691679194.5119412-CDS-H-elongata_contig149315:563..6981691679194.5119412-CDS-H-elongata_contig149315:563..698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149315 564..698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149315.3303.1prot_H-elongata_contig149315.3303.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149315 564..698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149315.3303.1

>prot_H-elongata_contig149315.3303.1 ID=prot_H-elongata_contig149315.3303.1|Name=mRNA_H-elongata_contig149315.3303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHEVRPCK
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mRNA from alignment at H-elongata_contig149315:564..698-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149315.3303.1 ID=mRNA_H-elongata_contig149315.3303.1|Name=mRNA_H-elongata_contig149315.3303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig149315:564..698- (Himanthalia elongata Himel1 dioecious)
GTGAAGAGCTGGGGCACCGAGGGGCGCAGCGAGGAGGGCATGCACATCCC
TCCTGCGGATCAGCTCCACGAGATGGTCCAGTTCAGGGGAGAGGACATCA
AGGACCTCCACGTGCACGAGGTTAGGCCCTGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig149315:564..698-

>mRNA_H-elongata_contig149315.3303.1 ID=mRNA_H-elongata_contig149315.3303.1|Name=mRNA_H-elongata_contig149315.3303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig149315:564..698- (Himanthalia elongata Himel1 dioecious)
GTGAAGAGCTGGGGCACCGAGGGGCGCAGCGAGGAGGGCATGCACATCCC
TCCTGCGGATCAGCTCCACGAGATGGTCCAGTTCAGGGGAGAGGACATCA
AGGACCTCCACGTGCACGAGGTTAGGCCCTGCAAGGTGAAGAGCTGGGGC
ACCGAGGGGCGCAGCGAGGAGGGCATGCACATCCCTCCTGCGGATCAGCT
CCACGAGATGGTCCAGTTCAGGGGAGAGGACATCAAGGACCTCCACGTGC
ACGAGGTTAGGCCCTGCAAG
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