prot_H-elongata_contig149282.3298.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig149282.3298.1
Unique Nameprot_H-elongata_contig149282.3298.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length236
Homology
BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.050e-11
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0
Query:    2 VSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLGKSCHRLRRLDAFGC 54
            VSD G A++A+    LT LN+SHC RVGEYGD AL+ LG+ C RLRRL+A GC
Sbjct:  269 VSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGC 321          
BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: K3X4C0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4C0_GLOUD)

HSP 1 Score: 72.0 bits (175), Expect = 8.270e-11
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    2 VSDSGIAEVAKTCT-GLTYLNISHCERVGEYGDRALIQLGKSCHRLRRLDAFGCSHAQDPGL 62
            +SD+GI ++A+ C   L ++++S CE VGEYGD+AL+++GK C +L  LD FGC H  D G+
Sbjct:  136 ISDAGIVKIAQCCKQNLRHVDVSECEHVGEYGDKALVEIGKWCPQLTHLDLFGCRHVHDAGV 197          
BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: D7G8U9_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U9_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 9.040e-7
Identity = 151/217 (69.59%), Postives = 156/217 (71.89%), Query Frame = 0
Query:   31 YGDRALIQLGKSCHRLRRLDAFGCSHAQ-----------DPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAALRSLCDMNAHSLXXXXXXXXXXXXXXXIAVNCTALXXXXXXXXPSIGRRFMAKLCGDMKFSEPAYSFFGFQ 236
            YGDRALIQLG+SCH+L  LDAFGCSHAQ           DPGL                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ALR+LC MNA  LXXXXXXXXXXXXXXX        XXXXXXXX  IGRRFMA+LC  MK SEPA +FFGFQ
Sbjct:  324 YGDRALIQLGRSCHQLTGLDAFGCSHAQVWLLHVGVITLDPGLLSVARGCPKLEKLMLTGCGGITGKSVRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRALCSMNAQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGRRFMAELCHSMKLSEPAQAFFGFQ 540          
BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A1V9Z6R7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z6R7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.950e-6
Identity = 24/40 (60.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    2 VSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLGK 41
            V+D GIA+VA+ C GLTY+++S C+ VGE+GD+AL +LGK
Sbjct:  240 VTDVGIAKVAQCCKGLTYIDVSECQHVGEFGDKALTELGK 279          
BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A6G0XPV4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPV4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.580e-6
Identity = 23/39 (58.97%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    2 VSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLG 40
            V+D+GI+++A+ C GLTYL++S C  VGE+GD+ALI+LG
Sbjct:  240 VTDAGISKIAQCCKGLTYLDVSDCAHVGEFGDKALIELG 278          
BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A6A3NV34_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NV34_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.770e-5
Identity = 24/61 (39.34%), Postives = 34/61 (55.74%), Query Frame = 0
Query:    2 VSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLGKSCHRLRRLDAFGCSHAQDPGL 62
            VSD+GI ++A+ C  L +L++S C R+GEYGD+A                 GC H  DPG+
Sbjct:  356 VSDAGIVKIAQCCKDLRHLDVSECSRLGEYGDKAXXXXXXXXXXXXXXXXXGCQHVHDPGV 416          
BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: F0Y3K0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3K0_AURAN)

HSP 1 Score: 53.5 bits (127), Expect = 3.660e-5
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 0
Query:   27 RVGEYGDRALIQLGKSCHRLRRLDAFGCSHAQD 59
            R+GE+GDRAL+ LG+ C RL RLD FGC+H QD
Sbjct:  115 RLGEFGDRALLALGRFCGRLERLDMFGCAHVQD 147          
BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A482S5N3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5N3_9ARCH)

HSP 1 Score: 53.5 bits (127), Expect = 9.850e-5
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 0
Query:    6 GIAEVAKTCTG-LTYLNISHCERVGEYGDRALIQLGKSCHRLRRLDAFGCSHAQDPG 61
            G+A +A+  T  L YLN++ C  +GE+GDRAL +LG +CH L  L        +DPG
Sbjct:  162 GVARIAQGMTSHLIYLNVNGCPNIGEFGDRALRELGANCHNLEELYMGETKRIEDPG 218          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CGM1_9STRA6.050e-1162.26WW domain-containing protein n=1 Tax=Tribonema min... [more]
K3X4C0_GLOUD8.270e-1148.39Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D7G8U9_ECTSI9.040e-769.59Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A1V9Z6R7_9STRA3.950e-660.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0XPV4_9STRA9.580e-658.97Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A3NV34_9STRA1.770e-539.34Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
F0Y3K0_AURAN3.660e-566.67Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A482S5N3_9ARCH9.850e-543.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 121..146
e-value: 0.69
score: 18.9
coord: 43..68
e-value: 8.7
score: 15.0
coord: 95..120
e-value: 0.003
score: 26.8
coord: 14..42
e-value: 0.034
score: 23.3
coord: 176..196
e-value: 74.0
score: 7.8
coord: 197..222
e-value: 110.0
score: 6.3
coord: 69..94
e-value: 3.6E-4
score: 29.9
coord: 147..172
e-value: 0.074
score: 22.2
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 148..170
e-value: 0.11
score: 12.6
coord: 95..118
e-value: 0.82
score: 9.9
coord: 69..92
e-value: 1.1
score: 9.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..173
e-value: 1.8E-41
score: 144.0
coord: 174..226
e-value: 2.5E-6
score: 28.0
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 46..224
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 2..77
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 46..224
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 2..77
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 3..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149282contigH-elongata_contig149282:352..1518 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149282.3298.1mRNA_H-elongata_contig149282.3298.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig149282 352..1548 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig149282.3298.1 ID=prot_H-elongata_contig149282.3298.1|Name=mRNA_H-elongata_contig149282.3298.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
MVSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLGKSCHRLRRLD
AFGCSHAQDPGLLAVARGCPKLEKLMLTGCGGITGKSVRALARGCTALRH
LSLSGCGGVGNGDLKELAKGCTELRHLNIAHCAQANANGLAALARGLKNL
TELDVGGCERINDAALRSLCDMNAHSLNLSGCTAISEAGVTSIAVNCTAL
SSLNVTGCPSIGRRFMAKLCGDMKFSEPAYSFFGFQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf