mRNA_H-elongata_contig149282.3298.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149282.3298.1
Unique NamemRNA_H-elongata_contig149282.3298.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.250e-16
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 LRSLSLEGCPMVSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLGKSCHRLRRLDAFGC 192
            LR+LSLEGC  VSD G A++A+    LT LN+SHC RVGEYGD AL+ LG+ C RLRRL+A GC
Sbjct:  258 LRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGC 321
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BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: K3X4C0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4C0_GLOUD)

HSP 1 Score: 78.2 bits (191), Expect = 8.290e-13
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 LRSLSLEGCPMVSDSGIAEVAKTCT-GLTYLNISHCERVGEYGDRALIQLGKSCHRLRRLDAFGCSHAQDPGL 216
            L +L L  C  +SD+GI ++A+ C   L ++++S CE VGEYGD+AL+++GK C +L  LD FGC H  D G+
Sbjct:  125 LHTLVLRRCARISDAGIVKIAQCCKQNLRHVDVSECEHVGEYGDKALVEIGKWCPQLTHLDLFGCRHVHDAGV 197
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BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A1V9Z6R7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z6R7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.050e-8
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 LRSLSLEGCPMVSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLGK 153
            + +  L  CP V+D GIA+VA+ C GLTY+++S C+ VGE+GD+AL +LGK
Sbjct:  229 IETFILARCPNVTDVGIAKVAQCCKGLTYIDVSECQHVGEFGDKALTELGK 279
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BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A6G0XPV4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPV4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.400e-7
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 LRSLSLEGCPMVSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLG 150
            +  L L  C  V+D+GI+++A+ C GLTYL++S C  VGE+GD+ALI+LG
Sbjct:  229 IEKLILARCKQVTDAGISKIAQCCKGLTYLDVSDCAHVGEFGDKALIELG 278
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BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: D7G8U9_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U9_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.080e-6
Identity = 151/217 (69.59%), Postives = 156/217 (71.89%), Query Frame = 1 
Query:  121 YGDRALIQLGKSCHRLRRLDAFGCSHAQ-----------DPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAALRSLCDMNAHSLXXXXXXXXXXXXXXXIAVNCTALXXXXXXXXPSIGRRFMAKLCGDMKFSEPAYSFFGFQ 738
            YGDRALIQLG+SCH+L  LDAFGCSHAQ           DPGL                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ALR+LC MNA  LXXXXXXXXXXXXXXX        XXXXXXXX  IGRRFMA+LC  MK SEPA +FFGFQ
Sbjct:  324 YGDRALIQLGRSCHQLTGLDAFGCSHAQVWLLHVGVITLDPGLLSVARGCPKLEKLMLTGCGGITGKSVRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRALCSMNAQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGRRFMAELCHSMKLSEPAQAFFGFQ 540
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BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A1V9ZDB6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDB6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.570e-6
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 LRSLSLEGCPMVSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRAL 138
            + +  L  CP V+D+GIA++A+ C GLTY+++S C+ VGE+GD+AL
Sbjct:  192 IETFLLARCPNVTDAGIAKIAQCCKGLTYIDVSECQHVGEFGDKAL 237
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BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A024USX1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USX1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.680e-6
Identity = 23/50 (46.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 LRSLSLEGCPMVSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLG 150
            + +L L  C  ++D+GIA++A+ C  LT+L++S C  VGE+GD+AL++LG
Sbjct:  235 IETLVLARCVAITDAGIAKIAQCCKSLTHLDVSECAHVGEFGDKALVELG 284
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BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: A0A2J7ZV99_9CHLO (Thioredoxin-like protein CDSP32, chloroplastic n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZV99_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-5
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    1 LRSLSLEGCPMVSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLGKSCHRLRRLDAFGCSHA 201
            LRSLS+ GCP+V+D GIA +   C  L+ L++  C R+      AL+ L    H LRR+ A GCS A
Sbjct:  519 LRSLSIAGCPLVTDRGIAAIVAACPILSELDVDQCVRLNAASASALLAL----HELRRVSAEGCSAA 581
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BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Match: F0Y3K0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3K0_AURAN)

HSP 1 Score: 53.5 bits (127), Expect = 4.100e-5
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:  109 RVGEYGDRALIQLGKSCHRLRRLDAFGCSHAQD 207
            R+GE+GDRAL+ LG+ C RL RLD FGC+H QD
Sbjct:  115 RLGEFGDRALLALGRFCGRLERLDMFGCAHVQD 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149282.3298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CGM1_9STRA4.250e-1664.06WW domain-containing protein n=1 Tax=Tribonema min... [more]
K3X4C0_GLOUD8.290e-1346.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9Z6R7_9STRA4.050e-852.94Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0XPV4_9STRA2.400e-752.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D7G8U9_ECTSI1.080e-669.59Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A1V9ZDB6_9STRA2.570e-650.00Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A024USX1_9STRA4.680e-646.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A2J7ZV99_9CHLO1.060e-544.78Thioredoxin-like protein CDSP32, chloroplastic n=1... [more]
F0Y3K0_AURAN4.100e-566.67Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149282contigH-elongata_contig149282:352..1548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue2.4e-10
Seed eggNOG ortholog65071.PYU1_T012069
Preferred nameWAC
KEGG koko:K19613
KEGG Pathwayko04014,map04014
GOsGO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
EggNOG free text desc.leucine rich repeat calmodulin binding protein. Source PGD
EggNOG OGs1MEWD@121069,COG5104@1,KOG0152@2759,KOG4341@1,KOG4341@2759
COG Functional cat.A
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat calmodulin binding protein
Ec32 orthologEc-15_004330.1
Exons3
Model size738
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149282.3298.1prot_H-elongata_contig149282.3298.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149282 352..1518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.914142-CDS-H-elongata_contig149282:351..6571622929882.914142-CDS-H-elongata_contig149282:351..657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149282 352..657 -
1691679194.3335454-CDS-H-elongata_contig149282:351..6571691679194.3335454-CDS-H-elongata_contig149282:351..657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149282 352..657 -
1622929882.9432957-CDS-H-elongata_contig149282:945..11731622929882.9432957-CDS-H-elongata_contig149282:945..1173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149282 946..1173 -
1691679194.347495-CDS-H-elongata_contig149282:945..11731691679194.347495-CDS-H-elongata_contig149282:945..1173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149282 946..1173 -
1622929882.9634337-CDS-H-elongata_contig149282:1344..15181622929882.9634337-CDS-H-elongata_contig149282:1344..1518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149282 1345..1518 -
1691679194.3555734-CDS-H-elongata_contig149282:1344..15181691679194.3555734-CDS-H-elongata_contig149282:1344..1518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149282 1345..1518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.977297-UTR-H-elongata_contig149282:1518..15481622929882.977297-UTR-H-elongata_contig149282:1518..1548Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149282 1519..1548 -
1691679194.3650036-UTR-H-elongata_contig149282:1518..15481691679194.3650036-UTR-H-elongata_contig149282:1518..1548Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149282 1519..1548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149282.3298.1

>prot_H-elongata_contig149282.3298.1 ID=prot_H-elongata_contig149282.3298.1|Name=mRNA_H-elongata_contig149282.3298.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
MVSDSGIAEVAKTCTGLTYLNISHCERVGEYGDRALIQLGKSCHRLRRLD
AFGCSHAQDPGLLAVARGCPKLEKLMLTGCGGITGKSVRALARGCTALRH
LSLSGCGGVGNGDLKELAKGCTELRHLNIAHCAQANANGLAALARGLKNL
TELDVGGCERINDAALRSLCDMNAHSLNLSGCTAISEAGVTSIAVNCTAL
SSLNVTGCPSIGRRFMAKLCGDMKFSEPAYSFFGFQ
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mRNA from alignment at H-elongata_contig149282:352..1548-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149282.3298.1 ID=mRNA_H-elongata_contig149282.3298.1|Name=mRNA_H-elongata_contig149282.3298.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-elongata_contig149282:352..1548- (Himanthalia elongata Himel1 dioecious)
CTGAGGTCACTATCACTCGAGGGCTGCCCAATGGTAAGCGACTCCGGGAT
AGCGGAAGTGGCAAAAACGTGCACGGGACTGACCTACCTGAATATCAGCC
ACTGCGAGCGAGTCGGAGAGTATGGGGATCGGGCTCTGATCCAGCTCGGC
AAAAGTTGTCATCGGCTCAGGAGGCTTGACGCGTTCGGATGCTCCCATGC
TCAGGTAAATATTCGCCCACGAAAACGGTGCAAATACCGCCTCTGTCTCC
AGCGTGGCTCTAAGTAAAAAGGAAGAGAGGGGAAAATGTATCTCCATCCC
GGTGGTGCAACTGTCTACAACTTCGCGCTCGCGTTCGCTCGAACAACGCA
CAACTGTATATAACGACTAATACAGGATCCCGGACTTTTGGCAGTAGCGC
GTGGCTGTCCGAAGCTGGAGAAGCTAATGTTGACAGGGTGCGGTGGTATT
ACGGGTAAGAGTGTTCGTGCGCTGGCACGAGGGTGCACGGCACTACGACA
CCTCAGCCTTTCGGGATGCGGCGGTGTGGGCAATGGTGATCTCAAGGAGC
TTGCCAAGGGCTGCACGGAGCTCCGCCATCTGAACATCGCGCATTGCGCG
CAGGTGAAAGGAGAGAGTGCGTTGAGAAAGAGGATATTTTTGACTCGTTG
CGCTAGATGTCAAACACGAACACCTCCTCATAAGAGTAACGTCCCCCAAG
ACTTGAACGCATGCTTAATGGGAGCGTACGAAACTTTACCCGCCAATTAA
CGCACGCGATCACAAACGTAATGTCTTTCACCAGAAAGGAAAACAAATCG
TCCTTCGTCGCATTCGAAGGCATCCCTTACCGCCTTTTGCGATTGCACTT
TCTCCGAACGTATGCATGTGCAAAAACCTATCGACGAAAAGGCGAATGCC
AATGGACTAGCGGCGCTCGCACGGGGGTTAAAGAACTTGACTGAACTTGA
TGTCGGGGGATGCGAGCGCATCAACGACGCGGCCTTACGTTCGCTCTGTG
ACATGAACGCGCATTCCCTCAACCTTTCCGGGTGTACGGCCATATCTGAG
GCCGGTGTCACCAGTATCGCCGTGAACTGCACCGCTCTATCGAGTCTTAA
CGTCACTGGGTGCCCCTCGATAGGGAGGCGCTTCATGGCGAAGCTCTGCG
GCGACATGAAGTTCTCGGAGCCCGCATATTCCTTTTTTGGCTTTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig149282:352..1548-

>mRNA_H-elongata_contig149282.3298.1 ID=mRNA_H-elongata_contig149282.3298.1|Name=mRNA_H-elongata_contig149282.3298.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig149282:352..1548- (Himanthalia elongata Himel1 dioecious)
ATGGTAAGCGACTCCGGGATAGCGGAAGTGGCAAAAACGTGCACGGGACT
GACCTACCTGAATATCAGCCACTGCGAGCGAGTCGGAGAGTATGGGGATC
GGGCTCTGATCCAGCTCGGCAAAAGTTGTCATCGGCTCAGGAGGCTTGAC
GCGTTCGGATGCTCCCATGCTCAGATGGTAAGCGACTCCGGGATAGCGGA
AGTGGCAAAAACGTGCACGGGACTGACCTACCTGAATATCAGCCACTGCG
AGCGAGTCGGAGAGTATGGGGATCGGGCTCTGATCCAGCTCGGCAAAAGT
TGTCATCGGCTCAGGAGGCTTGACGCGTTCGGATGCTCCCATGCTCAGGA
TCCCGGACTTTTGGCAGTAGCGCGTGGCTGTCCGAAGCTGGAGAAGCTAA
TGTTGACAGGGTGCGGTGGTATTACGGGTAAGAGTGTTCGTGCGCTGGCA
CGAGGGTGCACGGCACTACGACACCTCAGCCTTTCGGGATGCGGCGGTGT
GGGCAATGGTGATCTCAAGGAGCTTGCCAAGGGCTGCACGGAGCTCCGCC
ATCTGAACATCGCGCATTGCGCGCAGGATCCCGGACTTTTGGCAGTAGCG
CGTGGCTGTCCGAAGCTGGAGAAGCTAATGTTGACAGGGTGCGGTGGTAT
TACGGGTAAGAGTGTTCGTGCGCTGGCACGAGGGTGCACGGCACTACGAC
ACCTCAGCCTTTCGGGATGCGGCGGTGTGGGCAATGGTGATCTCAAGGAG
CTTGCCAAGGGCTGCACGGAGCTCCGCCATCTGAACATCGCGCATTGCGC
GCAGGCGAATGCCAATGGACTAGCGGCGCTCGCACGGGGGTTAAAGAACT
TGACTGAACTTGATGTCGGGGGATGCGAGCGCATCAACGACGCGGCCTTA
CGTTCGCTCTGTGACATGAACGCGCATTCCCTCAACCTTTCCGGGTGTAC
GGCCATATCTGAGGCCGGTGTCACCAGTATCGCCGTGAACTGCACCGCTC
TATCGAGTCTTAACGTCACTGGGTGCCCCTCGATAGGGAGGCGCTTCATG
GCGAAGCTCTGCGGCGACATGAAGTTCTCGGAGCCCGCATATTCCTTTTT
TGGCTTTCAGGCGAATGCCAATGGACTAGCGGCGCTCGCACGGGGGTTAA
AGAACTTGACTGAACTTGATGTCGGGGGATGCGAGCGCATCAACGACGCG
GCCTTACGTTCGCTCTGTGACATGAACGCGCATTCCCTCAACCTTTCCGG
GTGTACGGCCATATCTGAGGCCGGTGTCACCAGTATCGCCGTGAACTGCA
CCGCTCTATCGAGTCTTAACGTCACTGGGTGCCCCTCGATAGGGAGGCGC
TTCATGGCGAAGCTCTGCGGCGACATGAAGTTCTCGGAGCCCGCATATTC
CTTTTTTGGCTTTCAG
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