mRNA_H-elongata_contig14925.3297.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14925.3297.1
Unique NamemRNA_H-elongata_contig14925.3297.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14925.3297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14925contigH-elongata_contig14925:2213..3397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_004800.2
Exons1
Model size1185
Cds size1185
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.864908-CDS-H-elongata_contig14925:2212..33971622929882.864908-CDS-H-elongata_contig14925:2212..3397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14925 2213..3397 -
1691679194.3212545-CDS-H-elongata_contig14925:2212..33971691679194.3212545-CDS-H-elongata_contig14925:2212..3397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14925 2213..3397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14925.3297.1prot_H-elongata_contig14925.3297.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14925 2213..3397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14925.3297.1

>prot_H-elongata_contig14925.3297.1 ID=prot_H-elongata_contig14925.3297.1|Name=mRNA_H-elongata_contig14925.3297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=395bp
LEALLVALESARGGKRWYVPASPLQVVCFSLCVACREHFQWQVVITTDFQ
RRLWTNKRFRLHQGDTKSSRIPEARVRSMTWDVVLTKETFLSESDRLIDF
FEWPASLQELTFGWYFNRPIKSISWPTSLKLLTFFGYFDKPIEGVLWPES
LRQLRFSMRFNKPINRVVWPASLEHLIFGRCFDQPIDGIIWPASLKQLAF
GDCFNHPINNVKWPASLEKLTFGDRFNQPIDNVVWPESLPELSFPWSFNQ
TIDNNVTWPMSLRRLTFGRSFNNKIDGTTWPSSLQRLTLGTYFDRPIDTV
LWPVSLQKLTFGWKFNQPIEGVVWPISLQQLTFGTCFNQPVKYVLWPESL
QQLTFGTCFDQPIDMVIWPSSLRKMTFGWEFNQLIENVVWPESLR
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mRNA from alignment at H-elongata_contig14925:2213..3397-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14925.3297.1 ID=mRNA_H-elongata_contig14925.3297.1|Name=mRNA_H-elongata_contig14925.3297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1185bp|location=Sequence derived from alignment at H-elongata_contig14925:2213..3397- (Himanthalia elongata Himel1 dioecious)
CTAGAGGCCTTGCTCGTAGCCCTCGAAAGCGCTAGGGGCGGGAAGCGATG
GTACGTTCCAGCTTCACCGTTGCAGGTCGTGTGTTTCAGTTTGTGTGTGG
CCTGCCGCGAGCATTTCCAGTGGCAGGTTGTCATTACGACGGATTTCCAG
CGACGTCTTTGGACGAATAAACGTTTCAGGCTACATCAGGGCGATACAAA
GAGCTCACGAATACCTGAGGCACGGGTTCGTTCGATGACGTGGGACGTGG
TGCTTACCAAAGAAACCTTTCTTAGCGAAAGCGATCGGCTAATCGACTTT
TTCGAATGGCCAGCTTCACTGCAAGAACTTACGTTTGGGTGGTATTTCAA
TAGACCAATAAAAAGCATCTCGTGGCCCACGTCTTTGAAGCTACTAACGT
TCTTCGGATATTTTGACAAGCCTATTGAAGGTGTTCTATGGCCAGAATCG
CTACGGCAGCTGAGGTTTAGTATGCGCTTCAACAAGCCGATCAACCGCGT
TGTCTGGCCGGCCTCCTTGGAGCATTTGATATTCGGACGATGCTTTGATC
AGCCGATTGACGGTATCATATGGCCAGCTTCATTGAAGCAACTGGCTTTT
GGAGACTGTTTCAACCACCCTATTAATAACGTGAAATGGCCCGCTTCGCT
GGAAAAGCTTACATTTGGAGATCGGTTCAATCAGCCAATTGATAACGTTG
TTTGGCCGGAGTCGTTGCCGGAGCTGAGTTTTCCTTGGAGCTTTAACCAA
ACGATCGACAACAACGTAACGTGGCCGATGTCGCTGCGGCGGCTGACCTT
TGGACGAAGCTTCAACAATAAAATCGATGGAACGACGTGGCCGTCGTCGC
TTCAGCGGCTGACGCTTGGAACATACTTCGACAGACCGATCGACACCGTG
TTGTGGCCGGTATCTCTGCAAAAGCTAACCTTCGGATGGAAGTTTAATCA
GCCGATCGAGGGTGTCGTATGGCCGATTTCGTTGCAACAGCTTACGTTCG
GGACTTGCTTTAACCAGCCCGTCAAATATGTTTTGTGGCCCGAGTCATTG
CAACAATTGACCTTTGGGACCTGTTTCGACCAACCCATCGATATGGTGAT
TTGGCCGTCGTCGCTGCGGAAAATGACATTCGGATGGGAGTTTAACCAAC
TTATCGAGAATGTCGTGTGGCCGGAGTCCCTGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig14925:2213..3397-

>mRNA_H-elongata_contig14925.3297.1 ID=mRNA_H-elongata_contig14925.3297.1|Name=mRNA_H-elongata_contig14925.3297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2370bp|location=Sequence derived from alignment at H-elongata_contig14925:2213..3397- (Himanthalia elongata Himel1 dioecious)
CTAGAGGCCTTGCTCGTAGCCCTCGAAAGCGCTAGGGGCGGGAAGCGATG
GTACGTTCCAGCTTCACCGTTGCAGGTCGTGTGTTTCAGTTTGTGTGTGG
CCTGCCGCGAGCATTTCCAGTGGCAGGTTGTCATTACGACGGATTTCCAG
CGACGTCTTTGGACGAATAAACGTTTCAGGCTACATCAGGGCGATACAAA
GAGCTCACGAATACCTGAGGCACGGGTTCGTTCGATGACGTGGGACGTGG
TGCTTACCAAAGAAACCTTTCTTAGCGAAAGCGATCGGCTAATCGACTTT
TTCGAATGGCCAGCTTCACTGCAAGAACTTACGTTTGGGTGGTATTTCAA
TAGACCAATAAAAAGCATCTCGTGGCCCACGTCTTTGAAGCTACTAACGT
TCTTCGGATATTTTGACAAGCCTATTGAAGGTGTTCTATGGCCAGAATCG
CTACGGCAGCTGAGGTTTAGTATGCGCTTCAACAAGCCGATCAACCGCGT
TGTCTGGCCGGCCTCCTTGGAGCATTTGATATTCGGACGATGCTTTGATC
AGCCGATTGACGGTATCATATGGCCAGCTTCATTGAAGCAACTGGCTTTT
GGAGACTGTTTCAACCACCCTATTAATAACGTGAAATGGCCCGCTTCGCT
GGAAAAGCTTACATTTGGAGATCGGTTCAATCAGCCAATTGATAACGTTG
TTTGGCCGGAGTCGTTGCCGGAGCTGAGTTTTCCTTGGAGCTTTAACCAA
ACGATCGACAACAACGTAACGTGGCCGATGTCGCTGCGGCGGCTGACCTT
TGGACGAAGCTTCAACAATAAAATCGATGGAACGACGTGGCCGTCGTCGC
TTCAGCGGCTGACGCTTGGAACATACTTCGACAGACCGATCGACACCGTG
TTGTGGCCGGTATCTCTGCAAAAGCTAACCTTCGGATGGAAGTTTAATCA
GCCGATCGAGGGTGTCGTATGGCCGATTTCGTTGCAACAGCTTACGTTCG
GGACTTGCTTTAACCAGCCCGTCAAATATGTTTTGTGGCCCGAGTCATTG
CAACAATTGACCTTTGGGACCTGTTTCGACCAACCCATCGATATGGTGAT
TTGGCCGTCGTCGCTGCGGAAAATGACATTCGGATGGGAGTTTAACCAAC
TTATCGAGAATGTCGTGTGGCCGGAGTCCCTGCGGCTAGAGGCCTTGCTC
GTAGCCCTCGAAAGCGCTAGGGGCGGGAAGCGATGGTACGTTCCAGCTTC
ACCGTTGCAGGTCGTGTGTTTCAGTTTGTGTGTGGCCTGCCGCGAGCATT
TCCAGTGGCAGGTTGTCATTACGACGGATTTCCAGCGACGTCTTTGGACG
AATAAACGTTTCAGGCTACATCAGGGCGATACAAAGAGCTCACGAATACC
TGAGGCACGGGTTCGTTCGATGACGTGGGACGTGGTGCTTACCAAAGAAA
CCTTTCTTAGCGAAAGCGATCGGCTAATCGACTTTTTCGAATGGCCAGCT
TCACTGCAAGAACTTACGTTTGGGTGGTATTTCAATAGACCAATAAAAAG
CATCTCGTGGCCCACGTCTTTGAAGCTACTAACGTTCTTCGGATATTTTG
ACAAGCCTATTGAAGGTGTTCTATGGCCAGAATCGCTACGGCAGCTGAGG
TTTAGTATGCGCTTCAACAAGCCGATCAACCGCGTTGTCTGGCCGGCCTC
CTTGGAGCATTTGATATTCGGACGATGCTTTGATCAGCCGATTGACGGTA
TCATATGGCCAGCTTCATTGAAGCAACTGGCTTTTGGAGACTGTTTCAAC
CACCCTATTAATAACGTGAAATGGCCCGCTTCGCTGGAAAAGCTTACATT
TGGAGATCGGTTCAATCAGCCAATTGATAACGTTGTTTGGCCGGAGTCGT
TGCCGGAGCTGAGTTTTCCTTGGAGCTTTAACCAAACGATCGACAACAAC
GTAACGTGGCCGATGTCGCTGCGGCGGCTGACCTTTGGACGAAGCTTCAA
CAATAAAATCGATGGAACGACGTGGCCGTCGTCGCTTCAGCGGCTGACGC
TTGGAACATACTTCGACAGACCGATCGACACCGTGTTGTGGCCGGTATCT
CTGCAAAAGCTAACCTTCGGATGGAAGTTTAATCAGCCGATCGAGGGTGT
CGTATGGCCGATTTCGTTGCAACAGCTTACGTTCGGGACTTGCTTTAACC
AGCCCGTCAAATATGTTTTGTGGCCCGAGTCATTGCAACAATTGACCTTT
GGGACCTGTTTCGACCAACCCATCGATATGGTGATTTGGCCGTCGTCGCT
GCGGAAAATGACATTCGGATGGGAGTTTAACCAACTTATCGAGAATGTCG
TGTGGCCGGAGTCCCTGCGG
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