mRNA_H-elongata_contig148991.3289.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148991.3289.1
Unique NamemRNA_H-elongata_contig148991.3289.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Match: A0A6H5KVK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.690e-16
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    7 LDMSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGAS 156
            LDM P+VAGVTFLAFGNGAPDVFS+FVA+TSS DR   L+VG+G LLG++
Sbjct:    5 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSSTDREDGLLVGMGSLLGST 54
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BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Match: D7G0Z1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z1_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.760e-16
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    7 LDMSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGAS 156
            LDM P+VAGVTFLAFGNGAPDVFS+FVA+TSS DR   L+VG+G LLG++
Sbjct:   46 LDMPPEVAGVTFLAFGNGAPDVFSAFVALTSSADREDGLLVGMGSLLGST 95
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BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Match: A0A835ZHX1_9STRA (Sodium/calcium exchanger protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.410e-13
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    4 KLDMSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGASEFV 165
            ++D+SP+VAGVTFLAFGNGAPDVFSS  A+T  N  A  L+VG+G LLGA+ F+
Sbjct:   41 RMDLSPEVAGVTFLAFGNGAPDVFSSIAAVTGPNG-AENLLVGVGALLGAAMFI 93
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BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Match: A0A3P8ISJ7_9TREM (Na_Ca_ex domain-containing protein n=2 Tax=Schistosoma margrebowiei TaxID=48269 RepID=A0A3P8ISJ7_9TREM)

HSP 1 Score: 58.9 bits (141), Expect = 2.320e-10
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 RKLDMSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGASEFV 165
            R L MS ++AGVT LAFGNGAPDVFS+  A+T+ +  A    +GLG LLG   F+
Sbjct:    3 RSLRMSQNLAGVTLLAFGNGAPDVFSAVTAITTGDPDAPDEGLGLGFLLGKYIFI 57
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BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Match: UPI001454E79B (mitochondrial sodium/calcium exchanger protein-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001454E79B)

HSP 1 Score: 62.0 bits (149), Expect = 8.090e-10
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 RKLDMSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGASEFV 165
            + L +S +VAGVTFLAFGNGAPDV S+ VA+T+SND  + L +G   L GA+ F+
Sbjct:  127 KALKLSDNVAGVTFLAFGNGAPDVISAIVAITNSNDGDAGLAIGA--LFGAAVFI 179
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BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Match: A0A6P8H7L4_ACTTE (LOW QUALITY PROTEIN: mitochondrial sodium/calcium exchanger protein-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H7L4_ACTTE)

HSP 1 Score: 62.0 bits (149), Expect = 8.100e-10
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 RKLDMSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGASEFV 165
            + L MS +VAGVTFLA+GNGAPD+FS+  A T S+   SA  +G+  L GA  FV
Sbjct:  146 KTLKMSQNVAGVTFLAYGNGAPDIFSAIAAFTHSDKENSAAELGIQALFGAGVFV 200
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BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Match: A0A8B7XNN8_ACAPL (mitochondrial sodium/calcium exchanger protein-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XNN8_ACAPL)

HSP 1 Score: 61.6 bits (148), Expect = 1.110e-9
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 RKLDMSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGASEFV 165
            + L +S +VAGVTFLAFGNGAPDVFS+ VA+T+S D  + L +G   L GA+ F+
Sbjct:  130 KALKLSDNVAGVTFLAFGNGAPDVFSAVVAITNSKDGDAGLAIGA--LFGAAVFI 182
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BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Match: UPI000A2A457A (mitochondrial sodium/calcium exchanger protein isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A457A)

HSP 1 Score: 61.2 bits (147), Expect = 1.510e-9
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 RKLDMSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGASEFV 165
            R L MS +VAGVTFLA+GNGAPD+FS+  A + S    SA  +G+  LLGA  FV
Sbjct:  134 RTLRMSQNVAGVTFLAYGNGAPDIFSTIAAFSHSQGDNSAAELGIEALLGAGIFV 188
[Close]
BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Match: W7T6L0_9STRA (Ca2: cation antiporter family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6L0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.840e-9
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 KLDMSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGASEFV 165
            KL+++ DVAGVTFLA GNGAPDVFSS  A +SS+   S ++VG+  +LGA+ FV
Sbjct:   77 KLNLTYDVAGVTFLALGNGAPDVFSSIAAFSSSDP--SVVLVGVCEILGAAVFV 128
[Close]
BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Match: A0A0R3T9Q4_RODNA (Na_Ca_ex domain-containing protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3T9Q4_RODNA)

HSP 1 Score: 60.1 bits (144), Expect = 3.760e-9
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 RKLDMSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGASEFV 165
            R + MS ++AGVT LAFGNGAPDVFS+  A+T+ N  A    +GLG L+G+   V
Sbjct:  161 RSMHMSQNLAGVTLLAFGNGAPDVFSAVTAITTGNPEAPDEGLGLGFLMGSGLLV 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148991.3289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVK8_9PHAE4.690e-1674.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Z1_ECTSI8.760e-1674.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZHX1_9STRA2.410e-1364.81Sodium/calcium exchanger protein-domain-containing... [more]
A0A3P8ISJ7_9TREM2.320e-1054.55Na_Ca_ex domain-containing protein n=2 Tax=Schisto... [more]
UPI001454E79B8.090e-1056.36mitochondrial sodium/calcium exchanger protein-lik... [more]
A0A6P8H7L4_ACTTE8.100e-1054.55LOW QUALITY PROTEIN: mitochondrial sodium/calcium ... [more]
A0A8B7XNN8_ACAPL1.110e-956.36mitochondrial sodium/calcium exchanger protein-lik... [more]
UPI000A2A457A1.510e-956.36mitochondrial sodium/calcium exchanger protein iso... [more]
W7T6L0_9STRA2.840e-959.26Ca2: cation antiporter family n=2 Tax=Monodopsidac... [more]
A0A0R3T9Q4_RODNA3.760e-952.73Na_Ca_ex domain-containing protein n=1 Tax=Rodento... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148991contigH-elongata_contig148991:552..719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D7G0Z1
KEGG koko:K13754
KEGG TC2.A.19.4.4
GOsGO:0000003,GO:0000041,GO:0001101,GO:0003006,GO:0003674,GO:0003700,GO:0003712,GO:0005215,GO:0005384,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006355,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006828,GO:0006873,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008324,GO:0009314,GO:0009416,GO:0009628,GO:0009648,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009739,GO:0009740,GO:0009755,GO:0009791,GO:0009889,GO:0009987,GO:0010029,GO:0010033,GO:0010099,GO:0010228,GO:0010468,GO:0010476,GO:0010556,GO:0012505,GO:0012506,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015318,GO:0015672,GO:0016020,GO:0019219,GO:0019222,GO:0019725,GO:0022414,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030659,GO:0031090,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032870,GO:0033993,GO:0034220,GO:0034399,GO:0035725,GO:0042221,GO:0042592,GO:0043157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0048518,GO:0048571,GO:0048573,GO:0048574,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048608,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051252,GO:0051716,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071370,GO:0071396,GO:0071421,GO:0071495,GO:0071804,GO:0071805,GO:0071944,GO:0080090,GO:0097305,GO:0097306,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805,GO:0140110,GO:1900140,GO:1901700,GO:1901701,GO:1903506,GO:2000026,GO:2000030,GO:2000112,GO:2000306,GO:2001141
EggNOG free text desc.calcium:sodium antiporter activity involved in regulation of cardiac muscle cell membrane potential
EggNOG OGsCOG0530@1,KOG2399@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.0687356-CDS-H-elongata_contig148991:551..7071622929882.0687356-CDS-H-elongata_contig148991:551..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148991 552..707 -
1691679194.0256588-CDS-H-elongata_contig148991:551..7071691679194.0256588-CDS-H-elongata_contig148991:551..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148991 552..707 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.0867105-UTR-H-elongata_contig148991:707..7191622929882.0867105-UTR-H-elongata_contig148991:707..719Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148991 708..719 -
1691679194.0366495-UTR-H-elongata_contig148991:707..7191691679194.0366495-UTR-H-elongata_contig148991:707..719Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148991 708..719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148991.3289.1prot_H-elongata_contig148991.3289.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148991 552..707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148991.3289.1

>prot_H-elongata_contig148991.3289.1 ID=prot_H-elongata_contig148991.3289.1|Name=mRNA_H-elongata_contig148991.3289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MSPDVAGVTFLAFGNGAPDVFSSFVAMTSSNDRASALMVGLGLLLGASEF
V*
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mRNA from alignment at H-elongata_contig148991:552..719-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148991.3289.1 ID=mRNA_H-elongata_contig148991.3289.1|Name=mRNA_H-elongata_contig148991.3289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig148991:552..719- (Himanthalia elongata Himel1 dioecious)
CGAAAGCTCGATATGTCTCCCGACGTGGCCGGCGTGACGTTCCTGGCCTT
CGGCAACGGAGCCCCCGACGTCTTTTCTTCGTTCGTGGCGATGACTAGCT
CCAACGATCGTGCATCCGCCCTCATGGTGGGCTTGGGTCTGCTTCTGGGA
GCAAGTGAGTTCGTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig148991:552..719-

>mRNA_H-elongata_contig148991.3289.1 ID=mRNA_H-elongata_contig148991.3289.1|Name=mRNA_H-elongata_contig148991.3289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig148991:552..719- (Himanthalia elongata Himel1 dioecious)
ATGTCTCCCGACGTGGCCGGCGTGACGTTCCTGGCCTTCGGCAACGGAGC
CCCCGACGTCTTTTCTTCGTTCGTGGCGATGACTAGCTCCAACGATCGTG
CATCCGCCCTCATGGTGGGCTTGGGTCTGCTTCTGGGAGCAAGTGAGTTC
GTCTGAATGTCTCCCGACGTGGCCGGCGTGACGTTCCTGGCCTTCGGCAA
CGGAGCCCCCGACGTCTTTTCTTCGTTCGTGGCGATGACTAGCTCCAACG
ATCGTGCATCCGCCCTCATGGTGGGCTTGGGTCTGCTTCTGGGAGCAAGT
GAGTTCGTCTGA
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