mRNA_H-elongata_contig14899.3287.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14899.3287.1
Unique NamemRNA_H-elongata_contig14899.3287.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14899.3287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14899contigH-elongata_contig14899:16..1624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1219
Cds size1218
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.9098258-CDS-H-elongata_contig14899:16..4911622929881.9098258-CDS-H-elongata_contig14899:16..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14899 17..491 -
1691679193.9659865-CDS-H-elongata_contig14899:16..4911691679193.9659865-CDS-H-elongata_contig14899:16..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14899 17..491 -
1622929881.9254682-CDS-H-elongata_contig14899:881..16241622929881.9254682-CDS-H-elongata_contig14899:881..1624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14899 882..1624 -
1691679193.9743707-CDS-H-elongata_contig14899:881..16241691679193.9743707-CDS-H-elongata_contig14899:881..1624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14899 882..1624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14899.3287.1prot_H-elongata_contig14899.3287.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14899 17..1624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14899.3287.1

>prot_H-elongata_contig14899.3287.1 ID=prot_H-elongata_contig14899.3287.1|Name=mRNA_H-elongata_contig14899.3287.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=406bp
LLPPPFAPLWKSGGERHRHRDRGRDREERSSSRQQQHARRERDGEKHWPD
GDSRNNRGRARERGRSKERRGKDRNRHQEGRRGGRLSADGDGYTEVSGDG
NGDSETSSVSSSGKGDRRRPATDADANANANADTNPERVRVLDRDPRGGE
GFRLSAVKAPTSITSSRISSSDSRSSSVGAVVLVVGRIPRKTGVGPFTGV
EKRDKEDSVADRHASEGGGGDRGRSKNSSLSSSSSSSLPASTAVPPSRSR
ANQRPGAGTATATDPRPKSVPQRHVGDRYKSPSVQWWTPPPGQPPPPTSP
PPSPLSSSPSSRTTFPSAKIRSADDDMDIDDAPSPPPSPLPPPPPPPPPL
PLPSTQLPNPGPIQLPIQRQQHHQSLSPPAKTLQTARSQYPARHRAPTAR
RQHLLP
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mRNA from alignment at H-elongata_contig14899:16..1624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14899.3287.1 ID=mRNA_H-elongata_contig14899.3287.1|Name=mRNA_H-elongata_contig14899.3287.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1609bp|location=Sequence derived from alignment at H-elongata_contig14899:16..1624- (Himanthalia elongata Himel1 dioecious)
CTTCTGCCGCCGCCTTTCGCTCCACTCTGGAAGTCCGGAGGTGAACGGCA
TCGTCACAGAGACAGAGGCCGCGATCGCGAGGAGCGGTCGTCGTCCAGGC
AGCAGCAGCATGCAAGGCGAGAAAGAGACGGAGAGAAGCACTGGCCGGAT
GGAGATTCTCGCAACAATCGGGGGCGGGCTCGGGAGCGGGGCCGAAGCAA
GGAAAGACGGGGAAAAGATCGTAATCGACACCAGGAGGGTCGCCGCGGCG
GACGTCTATCCGCAGATGGCGACGGTTACACCGAGGTTAGCGGTGATGGC
AACGGTGACAGTGAAACTTCTTCTGTCTCCTCGAGCGGCAAGGGCGATCG
CCGCCGCCCTGCCACAGACGCGGACGCGAATGCGAATGCGAACGCCGACA
CCAACCCCGAGCGCGTTCGAGTTCTAGATCGAGATCCGCGTGGTGGTGAG
GGCTTTAGGCTGTCTGCGGTGAAAGCGCCCACGTCTATCACCAGTAGTAG
AATTAGTAGTAGTGATAGTCGTAGCAGCAGCGTTGGTGCTGTTGTTCTCG
TTGTCGGTCGGATTCCCAGGAAGACGGGAGTCGGACCTTTTACGGGGGTG
GAAAAGCGCGACAAGGAGGACTCGGTCGCGGACAGGCATGCCAGCGAAGG
TGGCGGTGGTGATCGCGGTCGCAGCAAGAACTCTTCATTATCTTCCTCGT
CCTCCTCATCCCTTCCCGCTTCAACAGCGGTTCCGCCGTCGCGGTAAGAG
CGGGTAACAAGTTTTGCGCGCTCGTGGCAAAGTTGTGGGAGAAGGCGGGG
AGATAAGGCGTGTCTTTTTTTTTCTATCCCCAATGGCGAAAATGGTGGTA
CGTGCTGGTGTTTTTGCGCGTCCAGCCCGGGGCGACTGGTTTCTGTCATG
TAGAGATGGAAGTATTTTATTGTTTTTGCCTGATTTGTCTAATTATTTTT
GAACTATTTTATTGTTACAACCTCACTGTTGTTTCCCTCCCTCTCTCAAT
GTTTCAGGATGTTGATACGCATTCATCCACACGTTATGTGTGGCACCCAT
TTGCGTATATTTGTGTGTTTTAGTGTATTTTCTTTGTATTCAAGTACCTG
CCTTTTTTTAATCTTTGACGAACCTTGGGACAGATCTCGCGCCAACCAGC
GGCCGGGAGCGGGAACAGCAACAGCAACAGACCCCCGCCCAAAAAGCGTT
CCGCAACGTCATGTCGGCGACCGCTACAAGTCGCCGTCCGTGCAGTGGTG
GACGCCGCCTCCGGGGCAACCCCCGCCGCCGACATCTCCCCCGCCCTCGC
CGCTGTCGAGCTCGCCTTCGTCGCGGACAACCTTCCCATCGGCGAAGATC
AGGTCTGCCGATGACGACATGGACATCGATGACGCTCCTTCACCGCCACC
ATCACCGTTGCCGCCTCCCCCTCCGCCGCCACCGCCGCTGCCGCTGCCAT
CGACTCAGCTGCCGAATCCGGGGCCGATCCAACTACCCATCCAACGACAG
CAGCATCATCAGTCTTTGTCGCCGCCGGCCAAAACTTTGCAGACGGCGCG
GTCCCAGTACCCAGCGCGGCACCGCGCGCCCACGGCGCGAAGACAACATT
TGCTCCCTA
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Coding sequence (CDS) from alignment at H-elongata_contig14899:16..1624-

>mRNA_H-elongata_contig14899.3287.1 ID=mRNA_H-elongata_contig14899.3287.1|Name=mRNA_H-elongata_contig14899.3287.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2436bp|location=Sequence derived from alignment at H-elongata_contig14899:16..1624- (Himanthalia elongata Himel1 dioecious)
CTTCTGCCGCCGCCTTTCGCTCCACTCTGGAAGTCCGGAGGTGAACGGCA
TCGTCACAGAGACAGAGGCCGCGATCGCGAGGAGCGGTCGTCGTCCAGGC
AGCAGCAGCATGCAAGGCGAGAAAGAGACGGAGAGAAGCACTGGCCGGAT
GGAGATTCTCGCAACAATCGGGGGCGGGCTCGGGAGCGGGGCCGAAGCAA
GGAAAGACGGGGAAAAGATCGTAATCGACACCAGGAGGGTCGCCGCGGCG
GACGTCTATCCGCAGATGGCGACGGTTACACCGAGGTTAGCGGTGATGGC
AACGGTGACAGTGAAACTTCTTCTGTCTCCTCGAGCGGCAAGGGCGATCG
CCGCCGCCCTGCCACAGACGCGGACGCGAATGCGAATGCGAACGCCGACA
CCAACCCCGAGCGCGTTCGAGTTCTAGATCGAGATCCGCGTGGTGGTGAG
GGCTTTAGGCTGTCTGCGGTGAAAGCGCCCACGTCTATCACCAGTAGTAG
AATTAGTAGTAGTGATAGTCGTAGCAGCAGCGTTGGTGCTGTTGTTCTCG
TTGTCGGTCGGATTCCCAGGAAGACGGGAGTCGGACCTTTTACGGGGGTG
GAAAAGCGCGACAAGGAGGACTCGGTCGCGGACAGGCATGCCAGCGAAGG
TGGCGGTGGTGATCGCGGTCGCAGCAAGAACTCTTCATTATCTTCCTCGT
CCTCCTCATCCCTTCCCGCTTCAACAGCGGTTCCGCCGTCGCGCTTCTGC
CGCCGCCTTTCGCTCCACTCTGGAAGTCCGGAGGTGAACGGCATCGTCAC
AGAGACAGAGGCCGCGATCGCGAGGAGCGGTCGTCGTCCAGGCAGCAGCA
GCATGCAAGGCGAGAAAGAGACGGAGAGAAGCACTGGCCGGATGGAGATT
CTCGCAACAATCGGGGGCGGGCTCGGGAGCGGGGCCGAAGCAAGGAAAGA
CGGGGAAAAGATCGTAATCGACACCAGGAGGGTCGCCGCGGCGGACGTCT
ATCCGCAGATGGCGACGGTTACACCGAGGTTAGCGGTGATGGCAACGGTG
ACAGTGAAACTTCTTCTGTCTCCTCGAGCGGCAAGGGCGATCGCCGCCGC
CCTGCCACAGACGCGGACGCGAATGCGAATGCGAACGCCGACACCAACCC
CGAGCGCGTTCGAGTTCTAGATCGAGATCCGCGTGGTGGTGAGGGCTTTA
GGCTGTCTGCGGTGAAAGCGCCCACGTCTATCACCAGTAGTAGAATTAGT
AGTAGTGATAGTCGTAGCAGCAGCGTTGGTGCTGTTGTTCTCGTTGTCGG
TCGGATTCCCAGGAAGACGGGAGTCGGACCTTTTACGGGGGTGGAAAAGC
GCGACAAGGAGGACTCGGTCGCGGACAGGCATGCCAGCGAAGGTGGCGGT
GGTGATCGCGGTCGCAGCAAGAACTCTTCATTATCTTCCTCGTCCTCCTC
ATCCCTTCCCGCTTCAACAGCGGTTCCGCCGTCGCGATCTCGCGCCAACC
AGCGGCCGGGAGCGGGAACAGCAACAGCAACAGACCCCCGCCCAAAAAGC
GTTCCGCAACGTCATGTCGGCGACCGCTACAAGTCGCCGTCCGTGCAGTG
GTGGACGCCGCCTCCGGGGCAACCCCCGCCGCCGACATCTCCCCCGCCCT
CGCCGCTGTCGAGCTCGCCTTCGTCGCGGACAACCTTCCCATCGGCGAAG
ATCAGGTCTGCCGATGACGACATGGACATCGATGACGCTCCTTCACCGCC
ACCATCACCGTTGCCGCCTCCCCCTCCGCCGCCACCGCCGCTGCCGCTGC
CATCGACTCAGCTGCCGAATCCGGGGCCGATCCAACTACCCATCCAACGA
CAGCAGCATCATCAGTCTTTGTCGCCGCCGGCCAAAACTTTGCAGACGGC
GCGGTCCCAGTACCCAGCGCGGCACCGCGCGCCCACGGCGCGAAGACAAC
ATTTGCTCCCTATCTCGCGCCAACCAGCGGCCGGGAGCGGGAACAGCAAC
AGCAACAGACCCCCGCCCAAAAAGCGTTCCGCAACGTCATGTCGGCGACC
GCTACAAGTCGCCGTCCGTGCAGTGGTGGACGCCGCCTCCGGGGCAACCC
CCGCCGCCGACATCTCCCCCGCCCTCGCCGCTGTCGAGCTCGCCTTCGTC
GCGGACAACCTTCCCATCGGCGAAGATCAGGTCTGCCGATGACGACATGG
ACATCGATGACGCTCCTTCACCGCCACCATCACCGTTGCCGCCTCCCCCT
CCGCCGCCACCGCCGCTGCCGCTGCCATCGACTCAGCTGCCGAATCCGGG
GCCGATCCAACTACCCATCCAACGACAGCAGCATCATCAGTCTTTGTCGC
CGCCGGCCAAAACTTTGCAGACGGCGCGGTCCCAGTACCCAGCGCGGCAC
CGCGCGCCCACGGCGCGAAGACAACATTTGCTCCCT
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