mRNA_H-elongata_contig148978.3286.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148978.3286.1
Unique NamemRNA_H-elongata_contig148978.3286.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148978.3286.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.090e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:    4 CNITDNNFQIATLRDPRAVTVSTYFHIARTNLPRLASEEIESVNDFCIKYIDVITQWISLRYFLFSEIIPDRSEIFWYEDAVADPIEWHGRYYAFIGLRPP 306
            C ITDN  Q   +RDPRAV VSTYFH  R +      +   S++   ++ + V+  + +LR+ LF  ++ +R+E+FWYE  V DP +WH R+ +F GL  P
Sbjct:   61 CEITDNRLQFVPIRDPRAVAVSTYFH--RVHKDNNYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILP 159
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BLAST of mRNA_H-elongata_contig148978.3286.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.400e-16
Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:   16 DNNFQIATLRDPRAVTVSTYFHIARTNLPRLASEEI---ESVNDFCIKYIDVITQWISLRYFLFSEIIPDRSEIFWYEDAVADPIEWHGRYYAFIGLR-PPLWV 315
            D++ Q A LRDPRAV VSTYF++   + P   S+ +   +S+++  +  +  + Q+ ++R+ LF   + D+SEIFWYEDA+ DP+ WH R+ +F G   P  W+
Sbjct:   27 DDSLQFAVLRDPRAVAVSTYFYVK--SHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWI 128
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BLAST of mRNA_H-elongata_contig148978.3286.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.160e-15
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:    4 CNITDNNFQIATLRDPRAVTVSTYFHIARTNLPRLASEEIESVNDFCIKYIDVITQWISLRYFLFSEIIPDRSEIFWYEDAVADPIEWHGRYYAFIGLRPPLWVI 318
            C I D+  Q+  LRDPRAV VS++FH+   + P       ESV+ F ++ +  I  +I LRY +  E +  ++  F Y++++ADP++WH R+ + +GL PP  V+
Sbjct:  254 CRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVV 358
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BLAST of mRNA_H-elongata_contig148978.3286.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 7.750e-15
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   40 LRDPRAVTVSTYFHIARTNLPRLASEEIESVNDFCIKYIDVITQWISLRYFLFSEIIPDRSEIFWYEDAVADPIEWHGRYYAFIGLR-PPLWV 315
            +RDPRAV VSTYF+I R+ +        +S+++  +  +  I Q+ ++R+ LF   + DRSEIFWYEDA+ DP+ W+ R+ +  G   P  W+
Sbjct:    1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWI 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148978.3286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KDV7_9PHAE2.090e-1740.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG38_9PHAE2.400e-1639.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJE4_ECTSI1.160e-1537.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2T4_ECTSI7.750e-1539.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148978contigH-elongata_contig148978:1173..1517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.8579905-CDS-H-elongata_contig148978:1172..15171622929881.8579905-CDS-H-elongata_contig148978:1172..1517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148978 1173..1517 -
1691679193.957073-CDS-H-elongata_contig148978:1172..15171691679193.957073-CDS-H-elongata_contig148978:1172..1517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148978 1173..1517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148978.3286.1prot_H-elongata_contig148978.3286.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148978 1173..1517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148978.3286.1

>prot_H-elongata_contig148978.3286.1 ID=prot_H-elongata_contig148978.3286.1|Name=mRNA_H-elongata_contig148978.3286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MCNITDNNFQIATLRDPRAVTVSTYFHIARTNLPRLASEEIESVNDFCIK
YIDVITQWISLRYFLFSEIIPDRSEIFWYEDAVADPIEWHGRYYAFIGLR
PPLWVIHYSAAAAIQ
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mRNA from alignment at H-elongata_contig148978:1173..1517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148978.3286.1 ID=mRNA_H-elongata_contig148978.3286.1|Name=mRNA_H-elongata_contig148978.3286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig148978:1173..1517- (Himanthalia elongata Himel1 dioecious)
ATGTGTAACATCACGGACAATAATTTCCAGATAGCGACACTTCGCGACCC
GCGCGCCGTGACGGTCAGCACCTACTTCCATATCGCTCGGACAAATTTGC
CGAGATTGGCCAGCGAAGAAATCGAGTCTGTCAACGACTTTTGTATCAAA
TATATAGACGTCATAACACAGTGGATTAGCCTCCGCTACTTTCTCTTTAG
CGAGATAATTCCCGATAGGTCAGAGATTTTCTGGTACGAGGACGCGGTTG
CTGACCCGATTGAGTGGCACGGTCGTTACTACGCCTTCATTGGTCTGCGG
CCGCCTCTTTGGGTGATTCACTACTCTGCAGCTGCAGCTATCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig148978:1173..1517-

>mRNA_H-elongata_contig148978.3286.1 ID=mRNA_H-elongata_contig148978.3286.1|Name=mRNA_H-elongata_contig148978.3286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig148978:1173..1517- (Himanthalia elongata Himel1 dioecious)
ATGTGTAACATCACGGACAATAATTTCCAGATAGCGACACTTCGCGACCC
GCGCGCCGTGACGGTCAGCACCTACTTCCATATCGCTCGGACAAATTTGC
CGAGATTGGCCAGCGAAGAAATCGAGTCTGTCAACGACTTTTGTATCAAA
TATATAGACGTCATAACACAGTGGATTAGCCTCCGCTACTTTCTCTTTAG
CGAGATAATTCCCGATAGGTCAGAGATTTTCTGGTACGAGGACGCGGTTG
CTGACCCGATTGAGTGGCACGGTCGTTACTACGCCTTCATTGGTCTGCGG
CCGCCTCTTTGGGTGATTCACTACTCTGCAGCTGCAGCTATCCAGATGTG
TAACATCACGGACAATAATTTCCAGATAGCGACACTTCGCGACCCGCGCG
CCGTGACGGTCAGCACCTACTTCCATATCGCTCGGACAAATTTGCCGAGA
TTGGCCAGCGAAGAAATCGAGTCTGTCAACGACTTTTGTATCAAATATAT
AGACGTCATAACACAGTGGATTAGCCTCCGCTACTTTCTCTTTAGCGAGA
TAATTCCCGATAGGTCAGAGATTTTCTGGTACGAGGACGCGGTTGCTGAC
CCGATTGAGTGGCACGGTCGTTACTACGCCTTCATTGGTCTGCGGCCGCC
TCTTTGGGTGATTCACTACTCTGCAGCTGCAGCTATCCAG
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