mRNA_H-elongata_contig14897.3284.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14897.3284.1
Unique NamemRNA_H-elongata_contig14897.3284.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Match: A0A2R4QPT4_9PHAE (Photosystem II reaction center X protein n=2 Tax=Fucus TaxID=3011 RepID=A0A2R4QPT4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.550e-16
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK 129
            MTPSLTNF  SLIAGGLIVVLPITLALSFVSQKDSLTRVP KK
Sbjct:    1 MTPSLTNFFYSLIAGGLIVVLPITLALSFVSQKDSLTRVPPKK 43
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BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Match: A0A8F0F7I0_9PHAE (Photosystem II reaction center X protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7I0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.580e-15
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK 129
            MTPSLTNFLSSL+AGGLIVVLPI+LAL FVSQKD+LTR+P KK
Sbjct:    1 MTPSLTNFLSSLLAGGLIVVLPISLALFFVSQKDALTRIPIKK 43
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BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Match: A0A1L2F1S9_9PHAE (Photosystem II reaction center X protein n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1S9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 7.410e-15
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK 129
            MTPSL NFL SLIAGG+IVVLPIT+ALSFVSQKD++TRVP KK
Sbjct:    1 MTPSLANFLYSLIAGGIIVVLPITVALSFVSQKDAITRVPPKK 43
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BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Match: A0A344PF83_9PHAE (Photosystem II reaction center X protein n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A344PF83_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.130e-14
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK 129
            MTPSLTNFLSSL+AGGLIVVLPI+LAL FVSQKD++TRV  KK
Sbjct:    1 MTPSLTNFLSSLVAGGLIVVLPISLALFFVSQKDAITRVSPKK 43
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BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Match: A0A6G6D7E9_ECTSI (Photosystem II reaction center X protein n=29 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7E9_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.020e-14
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK 129
            MTPSLTNFLSSLIAGGL+VVLPI+LAL FVS+KD+LTRV  KK
Sbjct:    1 MTPSLTNFLSSLIAGGLVVVLPISLALFFVSKKDALTRVSSKK 43
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BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Match: D1J769_ECTSI (Photosystem II reaction center X protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J769_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.230e-13
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK 129
            MTPSLTNFLSSLIAGGL+VVLPI+ AL FVS+KD+LTRV  KK
Sbjct:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 43
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BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Match: A0A8E5XRE8_9PHAE (Photosystem II reaction center X protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRE8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.550e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK 129
            MT SLTNFL SL+AG  IVV+PI+LAL FVSQKDSLTR+PQKK
Sbjct:    1 MTSSLTNFLFSLVAGAFIVVIPISLALLFVSQKDSLTRIPQKK 43
[Close]
BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Match: A0A6P0NFK4_9CYAN (Photosystem II reaction center X protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NFK4_9CYAN)

HSP 1 Score: 62.0 bits (149), Expect = 6.560e-12
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK 129
            MT SLTNFL SL+AGG IVV+PITLAL FVSQKD++ RVPQ K
Sbjct:    1 MTSSLTNFLLSLVAGGAIVVIPITLALLFVSQKDAIIRVPQGK 43
[Close]
BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Match: A0A2I4Q2Y0_9PHAE (Photosystem II reaction center X protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2Y0_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.410e-11
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK 129
            MT SLTNFL SLIAGG+IVV PITLAL FVS+KD++ RVPQ K
Sbjct:    1 MTSSLTNFLLSLIAGGIIVVGPITLALLFVSKKDAIIRVPQGK 43
[Close]
BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Match: A0A7S6U9U3_9STRA (Photosystem II reaction center X protein n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9U3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.530e-9
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK 129
            MT SL+NFL SLI GGL+VV+PI+LAL FVSQKD +TR P  K
Sbjct:    1 MTASLSNFLLSLITGGLVVVVPISLALIFVSQKDQVTRRPPVK 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14897.3284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QPT4_9PHAE1.550e-1693.02Photosystem II reaction center X protein n=2 Tax=F... [more]
A0A8F0F7I0_9PHAE2.580e-1586.05Photosystem II reaction center X protein n=1 Tax=P... [more]
A0A1L2F1S9_9PHAE7.410e-1583.72Photosystem II reaction center X protein n=14 Tax=... [more]
A0A344PF83_9PHAE2.130e-1483.72Photosystem II reaction center X protein n=5 Tax=E... [more]
A0A6G6D7E9_ECTSI3.020e-1483.72Photosystem II reaction center X protein n=29 Tax=... [more]
D1J769_ECTSI1.230e-1381.40Photosystem II reaction center X protein n=1 Tax=E... [more]
A0A8E5XRE8_9PHAE3.550e-1379.07Photosystem II reaction center X protein n=1 Tax=I... [more]
A0A6P0NFK4_9CYAN6.560e-1276.74Photosystem II reaction center X protein n=1 Tax=M... [more]
A0A2I4Q2Y0_9PHAE5.410e-1176.74Photosystem II reaction center X protein n=1 Tax=D... [more]
A0A7S6U9U3_9STRA2.530e-969.77Photosystem II reaction center X protein n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14897contigH-elongata_contig14897:6049..6180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.7441204-CDS-H-elongata_contig14897:6048..61801622929881.7441204-CDS-H-elongata_contig14897:6048..6180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 6049..6180 +
1691679193.9340792-CDS-H-elongata_contig14897:6048..61801691679193.9340792-CDS-H-elongata_contig14897:6048..6180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 6049..6180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14897.3284.1prot_H-elongata_contig14897.3284.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14897 6049..6180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14897.3284.1

>prot_H-elongata_contig14897.3284.1 ID=prot_H-elongata_contig14897.3284.1|Name=mRNA_H-elongata_contig14897.3284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MTPSLTNFLSSLIAGGLIVVLPITLALSFVSQKDSLTRVPQKK*
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mRNA from alignment at H-elongata_contig14897:6049..6180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14897.3284.1 ID=mRNA_H-elongata_contig14897.3284.1|Name=mRNA_H-elongata_contig14897.3284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig14897:6049..6180+ (Himanthalia elongata Himel1 dioecious)
ATGACACCTTCCTTAACAAATTTTTTATCTAGCTTAATTGCTGGTGGACT
TATTGTAGTTTTACCTATTACACTTGCCCTATCGTTTGTAAGTCAAAAAG
ATTCTCTTACTCGTGTGCCACAAAAAAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig14897:6049..6180+

>mRNA_H-elongata_contig14897.3284.1 ID=mRNA_H-elongata_contig14897.3284.1|Name=mRNA_H-elongata_contig14897.3284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig14897:6049..6180+ (Himanthalia elongata Himel1 dioecious)
ATGACACCTTCCTTAACAAATTTTTTATCTAGCTTAATTGCTGGTGGACT
TATTGTAGTTTTACCTATTACACTTGCCCTATCGTTTGTAAGTCAAAAAG
ATTCTCTTACTCGTGTGCCACAAAAAAAATAAATGACACCTTCCTTAACA
AATTTTTTATCTAGCTTAATTGCTGGTGGACTTATTGTAGTTTTACCTAT
TACACTTGCCCTATCGTTTGTAAGTCAAAAAGATTCTCTTACTCGTGTGC
CACAAAAAAAATAA
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