mRNA_H-elongata_contig14897.3283.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14897.3283.1
Unique NamemRNA_H-elongata_contig14897.3283.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A2R4QPT1_9PHAE (50S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPT1_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.970e-44
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISIFN 246
            MAHKKGAGSTKNGRDSK KRLGVKCFHGHQVK GNILIRQRGLTFKPGDNVGIGKDYTLYA + G V+FKKSN  TSISI N
Sbjct:    1 MAHKKGAGSTKNGRDSKPKRLGVKCFHGHQVKAGNILIRQRGLTFKPGDNVGIGKDYTLYALKEGMVYFKKSNTTTSISISN 82          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A141BSB3_9PHAE (50S ribosomal protein L27, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB3_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.480e-41
Identity = 66/81 (81.48%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISIF 243
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQV+ GNILIRQRGL FKPG NVGIG+DYTLYA + G V FKK+  +TSIS+F
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVRAGNILIRQRGLKFKPGQNVGIGRDYTLYALKEGLVFFKKTTKDTSISVF 81          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A0R6MBY3_UNDPI (50S ribosomal protein L27, chloroplastic n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6MBY3_UNDPI)

HSP 1 Score: 132 bits (333), Expect = 9.210e-39
Identity = 65/80 (81.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISI 240
            MAHKKGAGSTKNGRDSKSKRLGVKCF GH V+ GNILIRQRGL+FKPGDNVGIGKDYTLYA  AG V FKK    T IS+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVEAGNILIRQRGLSFKPGDNVGIGKDYTLYALTAGLVSFKKKKKQTCISV 80          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: D1J768_ECTSI (50S ribosomal protein L27, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J768_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.730e-38
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISIFNHNQ 255
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGH+V+ GNILIRQRG++F+PG NVG+G+DYTLYA   G V FKK N  T ISI   N+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGISFEPGKNVGVGRDYTLYASVEGVVSFKKKNKKTFISIIELNE 85          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A8F0F6S3_AKKLU (Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F6S3_AKKLU)

HSP 1 Score: 130 bits (328), Expect = 5.030e-38
Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISI 240
            MAHKKGAGSTKNGRDSKSKRLGVKCF GH+V+ GNILIRQRGL++KPG+NVGIG+DYTLYA + G V FKK N  T IS+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHKVQAGNILIRQRGLSYKPGENVGIGRDYTLYALKEGLVSFKKKNKKTCISV 80          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A8F0F9K0_9PHAE (Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F9K0_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.110e-37
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISI 240
            MAHKKGAGSTKNGRDSKSKRLGVKCF GH V+ GNILIRQRGL+FKPG NVG+G+DYTLYA + G V FKK N  T IS+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVQAGNILIRQRGLSFKPGSNVGVGRDYTLYALKEGLVSFKKVNKKTCISV 80          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A7T8JKF2_SCYLO (50S ribosomal protein L27, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JKF2_SCYLO)

HSP 1 Score: 127 bits (320), Expect = 1.860e-36
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISI 240
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGH+V+ GNILIRQRG++F+PG NVG+G+DYTLYA   G V FKK    T ISI
Sbjct:    3 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGVSFEPGKNVGVGRDYTLYACVEGVVSFKKKKKKTCISI 82          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A1I9LVY3_9PHAE (50S ribosomal protein L27, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY3_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 7.550e-36
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISIF 243
            MAHKKGAGSTKNGRDS+SKRLGVKCFHGH+V+ GNILIRQRG++F+PG NVG+G+DYTLYA   G V FKK+   T ISI 
Sbjct:    1 MAHKKGAGSTKNGRDSRSKRLGVKCFHGHKVQAGNILIRQRGVSFEPGKNVGMGRDYTLYASIEGIVSFKKTKKKTYISII 81          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A8F0F794_9PHAE (Ribosomal protein L27 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F794_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.970e-35
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKK 213
            MAHKKGAGSTKNGRDSKSKRLGVKCF GHQV+ GNILIRQRGL+FKPG+NVG GKDYTLYA + G+V F+K
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHQVQAGNILIRQRGLSFKPGENVGTGKDYTLYALKEGSVFFQK 71          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: B2XTB2_HETAK (50S ribosomal protein L2 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTB2_HETAK)

HSP 1 Score: 123 bits (308), Expect = 7.120e-35
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISIFNHN 252
            MAHKKGAGSTKNGRDS SKRLGVKCF  H+V  G+I+IRQRGL  K G+N+GIGKD+TLYA EAG V FKKS N T +SI N N
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFQNHKVSKGSIIIRQRGLRVKAGENIGIGKDFTLYALEAGLVKFKKSRNKTIVSIENCN 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QPT1_9PHAE1.970e-4487.8050S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSB3_9PHAE4.480e-4181.4850S ribosomal protein L27, chloroplastic n=14 Tax=... [more]
A0A0R6MBY3_UNDPI9.210e-3981.2550S ribosomal protein L27, chloroplastic n=23 Tax=... [more]
D1J768_ECTSI3.730e-3874.1250S ribosomal protein L27, chloroplastic n=2 Tax=E... [more]
A0A8F0F6S3_AKKLU5.030e-3877.50Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2... [more]
A0A8F0F9K0_9PHAE2.110e-3777.50Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2... [more]
A0A7T8JKF2_SCYLO1.860e-3676.2550S ribosomal protein L27, chloroplastic n=4 Tax=S... [more]
A0A1I9LVY3_9PHAE7.550e-3674.0750S ribosomal protein L27, chloroplastic n=1 Tax=P... [more]
A0A8F0F794_9PHAE1.970e-3583.10Ribosomal protein L27 n=1 Tax=Protohalopteris sp. ... [more]
B2XTB2_HETAK7.120e-3572.6250S ribosomal protein L2 n=2 Tax=Heterosigma akash... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14897contigH-elongata_contig14897:5572..5838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog2880.D1J768
Preferred namerpl27
KEGG koko:K02899
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0010033,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0211@1,KOG4600@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.6934667-CDS-H-elongata_contig14897:5571..58381622929881.6934667-CDS-H-elongata_contig14897:5571..5838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 5572..5838 +
1691679193.92343-CDS-H-elongata_contig14897:5571..58381691679193.92343-CDS-H-elongata_contig14897:5571..5838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 5572..5838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14897.3283.1prot_H-elongata_contig14897.3283.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14897 5572..5838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14897.3283.1

>prot_H-elongata_contig14897.3283.1 ID=prot_H-elongata_contig14897.3283.1|Name=mRNA_H-elongata_contig14897.3283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDN
VGIGKDYTLYAREAGTVHFKKSNNNTSISIFNHNQKVT*
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mRNA from alignment at H-elongata_contig14897:5572..5838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14897.3283.1 ID=mRNA_H-elongata_contig14897.3283.1|Name=mRNA_H-elongata_contig14897.3283.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig14897:5572..5838+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCATAAGAAAGGTGCAGGAAGTACCAAAAATGGACGAGATTCTAA GTCCAAACGACTTGGAGTAAAATGTTTTCATGGTCATCAAGTTAAAGTTG GTAATATTTTAATAAGACAACGAGGTTTAACATTTAAGCCAGGTGATAAT GTTGGTATAGGAAAAGATTATACTTTATATGCACGCGAAGCAGGGACAGT TCATTTTAAAAAAAGCAATAATAATACATCTATTTCAATTTTTAATCATA ATCAAAAGGTAACATAA
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Coding sequence (CDS) from alignment at H-elongata_contig14897:5572..5838+

>mRNA_H-elongata_contig14897.3283.1 ID=mRNA_H-elongata_contig14897.3283.1|Name=mRNA_H-elongata_contig14897.3283.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig14897:5572..5838+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCATAAGAAAGGTGCAGGAAGTACCAAAAATGGACGAGATTCTAA
GTCCAAACGACTTGGAGTAAAATGTTTTCATGGTCATCAAGTTAAAGTTG
GTAATATTTTAATAAGACAACGAGGTTTAACATTTAAGCCAGGTGATAAT
GTTGGTATAGGAAAAGATTATACTTTATATGCACGCGAAGCAGGGACAGT
TCATTTTAAAAAAAGCAATAATAATACATCTATTTCAATTTTTAATCATA
ATCAAAAGGTAACATAAATGGCCCATAAGAAAGGTGCAGGAAGTACCAAA
AATGGACGAGATTCTAAGTCCAAACGACTTGGAGTAAAATGTTTTCATGG
TCATCAAGTTAAAGTTGGTAATATTTTAATAAGACAACGAGGTTTAACAT
TTAAGCCAGGTGATAATGTTGGTATAGGAAAAGATTATACTTTATATGCA
CGCGAAGCAGGGACAGTTCATTTTAAAAAAAGCAATAATAATACATCTAT
TTCAATTTTTAATCATAATCAAAAGGTAACATAA
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