prot_H-elongata_contig14897.3282.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig14897.3282.1
Unique Name	prot_H-elongata_contig14897.3282.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	133

Homology

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BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.310e-71
Identity = 113/130 (86.92%), Postives = 123/130 (94.62%), Query Frame = 0

Query:    3 NLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 132
            NL+LK++VL LSKK+IL  +EQTYIKKNI  +FVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIG+ERKFLIHSPKFES+EIIKSARVRRSKLYYLRK+TTTKG+RLKQRF  K
Sbjct:    5 NLNLKEKVLSLSKKKILALVEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 134

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BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A6B9TNS0_SARFS (50S ribosomal protein L19, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TNS0_SARFS)

HSP 1 Score: 219 bits (557), Expect = 1.740e-71
Identity = 111/132 (84.09%), Postives = 126/132 (95.45%), Query Frame = 0

Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 132
            MKNL+LK++VL+LSKK+IL  +EQTYIKK+I  +FVGDTVKIGVLIKEGNKERIQYYQGIIL+KTNSGINLTISVRKIFQGIG+ERKFLIHSPKFES+++IKSARVRRSKLYYLRK+TTTKG+RLKQRF  K
Sbjct:    1 MKNLNLKEKVLYLSKKKILALVEQTYIKKSIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILSKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESLQVIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 132

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BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A2R4QPR9_9PHAE (50S ribosomal protein L19 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPR9_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 8.650e-67
Identity = 107/128 (83.59%), Postives = 118/128 (92.19%), Query Frame = 0

Query:    5 SLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 132
            +LK+EV  LS+KRILD +E+ Y KKN +N+FVGDTVKIGVLIKEGNKER+QYYQGIILAK NSGINLTI VRK+FQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRK TTTKG+RLKQRF +K
Sbjct:    3 NLKEEVPSLSRKRILDLVEENYKKKNTANLFVGDTVKIGVLIKEGNKERVQYYQGIILAKKNSGINLTIYVRKVFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKITTTKGSRLKQRFNSK 130

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BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.530e-59
Identity = 101/132 (76.52%), Postives = 114/132 (86.36%), Query Frame = 0

Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 132
            MKN +L++  L L   +I+DF+E TYIKK++S IFVGDTVKIGV IKEGNKERIQYYQGIIL K NSG+NLTISVRK+FQGIGVER+FLIHSPKFESIEIIKS+RVRRSKLYYLR S   KG+RLKQRF  K
Sbjct:    1 MKNSNLRQVPL-LPTAKIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLR-SIVGKGSRLKQRFRTK 130

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BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 5.940e-58
Identity = 97/132 (73.48%), Postives = 112/132 (84.85%), Query Frame = 0

Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 132
            MKNL LK+  + LS K+I+D +E  Y KKN+S IFVGDT+K+GV IKEGNKER+QYYQGIIL K NSGINLTISVRK+FQGIGVERKFL+HSPK ESIE+IKS+RVRRSKLYYLR +   KG+RLKQRF  K
Sbjct:    1 MKNLKLKRPSV-LSTKKIMDSVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLR-NIIGKGSRLKQRFRTK 130

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BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI)

HSP 1 Score: 184 bits (467), Expect = 7.920e-58
Identity = 99/132 (75.00%), Postives = 110/132 (83.33%), Query Frame = 0

Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 132
            MKNL   K+   L+ K ++D +E  +IKKN+S IFVGDTVKIGV IKEGNKERIQYYQGIIL K NSGINLTISVRK+FQGIGVER FLIHSPKFESIE+IKS+RVRRSKLYYLR S   KG+RLKQRF  K
Sbjct:    1 MKNL---KQTTFLNDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLR-SIVGKGSRLKQRFRTK 128

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BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 3.640e-52
Identity = 92/132 (69.70%), Postives = 110/132 (83.33%), Query Frame = 0

Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 132
            M+NL+LK  +  L+ ++I++ +E+   KK+I  IFVGDTVKIG+LIKEGNKERIQYYQGIIL K NSGINL ISVRK+FQGIGVER FLIHSPKFESI +IKS+RVRRSKLYYLR +   K +RLK+RF NK
Sbjct:    1 MENLNLK-HLPSLNSEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLR-NIIGKKSRLKERFRNK 130

[Close]

BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0F724_9PHAE (Ribosomal protein L19 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F724_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.260e-47
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 0

Query:   15 KKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRF 129
            K   +  IE+ Y+K  +S I +GD VKIGV IKEGNK+RIQYYQG+I+ K N+GINLTI+VRK+FQGIGVERKFLIHSPKFESIEI+KS+RVRRSKLYYLRK +  KG+RLK RF
Sbjct:   58 KSDFISSIEKLYLKNQVSKIQIGDLVKIGVYIKEGNKDRIQYYQGLIIGKNNAGINLTITVRKVFQGIGVERKFLIHSPKFESIEILKSSRVRRSKLYYLRKFSE-KGSRLKPRF 171

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BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A2I4Q2C7_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C7_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 6.710e-46
Identity = 77/131 (58.78%), Postives = 103/131 (78.63%), Query Frame = 0

Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTN 131
            MK L    +    + K ++D +E+ Y K +I  + VGDTVKIG+ IKEGNK+RIQYYQGI+++K N+GINL I VRK FQGIGVER+FL+HSPKF+S++++KSAR+RRSKLYYLR + + K +RLKQ+F N
Sbjct:    1 MKQLRKTNKQFSKNYKTLIDSVEKLYCKNDIKMVLVGDTVKIGISIKEGNKDRIQYYQGIVISKKNTGINLKIVVRKTFQGIGVERQFLLHSPKFQSVQVLKSARIRRSKLYYLR-NISGKASRLKQKFIN 130

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BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.630e-45
Identity = 75/116 (64.66%), Postives = 97/116 (83.62%), Query Frame = 0

Query:   17 RILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 132
            R ++ +E+ +IKKN+  +FVGDTVK+GV ++EGNKER+Q+Y+GIILAK+ S IN TISVRK+FQGIGVER FL++SPKF SIE+IKS+R+RRSKLYYLR +   K  RLK+RF  K
Sbjct:   24 RFIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLR-NIIGKAGRLKERFKKK 138

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A141BSB2_9PHAE	1.310e-71	86.92	50S ribosomal protein L19, chloroplastic n=1 Tax=S...	[more]
A0A6B9TNS0_SARFS	1.740e-71	84.09	50S ribosomal protein L19, chloroplastic n=13 Tax=...	[more]
A0A2R4QPR9_9PHAE	8.650e-67	83.59	50S ribosomal protein L19 n=3 Tax=Fucaceae TaxID=3...	[more]
A0A8F0F7M0_9PHAE	2.530e-59	76.52	Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2...	[more]
A0A8F0JYX3_9PHAE	5.940e-58	73.48	Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxI...	[more]
A0A0R6LUN6_UNDPI	7.920e-58	75.00	50S ribosomal protein L19, chloroplastic n=25 Tax=...	[more]
A0A8F0FAK4_9PHAE	3.640e-52	69.70	Ribosomal protein L19 n=1 Tax=Desmarestia aculeata...	[more]
A0A8F0F724_9PHAE	1.260e-47	71.30	Ribosomal protein L19 n=1 Tax=Protohalopteris sp. ...	[more]
A0A2I4Q2C7_9PHAE	6.710e-46	58.78	50S ribosomal protein L19, chloroplastic n=1 Tax=D...	[more]
A0A1I9LVW4_9PHAE	1.630e-45	64.66	50S ribosomal protein L19, chloroplastic n=1 Tax=P...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PRINTS	PR00061	RIBOSOMALL19	coord: 78..101 score: 47.22 coord: 18..47 score: 29.44 coord: 48..77 score: 44.03
IPR001857	Ribosomal protein L19	TIGRFAM	TIGR01024	TIGR01024	coord: 17..128 e-value: 2.4E-36 score: 122.3
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 18..127 e-value: 6.2E-36 score: 122.7
IPR001857	Ribosomal protein L19	PIRSF	PIRSF002191	Ribosomal_L19	coord: 1..132 e-value: 2.5E-40 score: 135.4
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 11..129
IPR001857	Ribosomal protein L19	HAMAP	MF_00402	Ribosomal_L19	coord: 16..129 score: 26.74
IPR038657	Ribosomal protein L19 superfamily	GENE3D	2.30.30.790		coord: 14..129 e-value: 1.6E-13 score: 52.5
None	No IPR available	PANTHER	PTHR15680:SF11		coord: 11..129
IPR018257	Ribosomal protein L19, conserved site	PROSITE	PS01015	RIBOSOMAL_L19	coord: 100..115
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 17..129

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14897	contig	H-elongata_contig14897:4776..5174 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14897.3282.1	mRNA_H-elongata_contig14897.3282.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig14897 4776..5174 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig14897.3282.1 ID=prot_H-elongata_contig14897.3282.1|Name=mRNA_H-elongata_contig14897.3282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGN
KERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEI
IKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001857	Ribosomal_L19
IPR038657	L19_sf
IPR018257	Ribosomal_L19_CS
IPR008991	Translation_prot_SH3-like_sf