mRNA_H-elongata_contig14897.3282.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14897.3282.1
Unique NamemRNA_H-elongata_contig14897.3282.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.310e-71
Identity = 113/130 (86.92%), Postives = 123/130 (94.62%), Query Frame = 1
Query:    7 NLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
            NL+LK++VL LSKK+IL  +EQTYIKKNI  +FVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIG+ERKFLIHSPKFES+EIIKSARVRRSKLYYLRK+TTTKG+RLKQRF  K
Sbjct:    5 NLNLKEKVLSLSKKKILALVEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 134          
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A6B9TNS0_SARFS (50S ribosomal protein L19, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TNS0_SARFS)

HSP 1 Score: 219 bits (557), Expect = 1.740e-71
Identity = 111/132 (84.09%), Postives = 126/132 (95.45%), Query Frame = 1
Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
            MKNL+LK++VL+LSKK+IL  +EQTYIKK+I  +FVGDTVKIGVLIKEGNKERIQYYQGIIL+KTNSGINLTISVRKIFQGIG+ERKFLIHSPKFES+++IKSARVRRSKLYYLRK+TTTKG+RLKQRF  K
Sbjct:    1 MKNLNLKEKVLYLSKKKILALVEQTYIKKSIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILSKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESLQVIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 132          
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A2R4QPR9_9PHAE (50S ribosomal protein L19 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPR9_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 8.650e-67
Identity = 107/128 (83.59%), Postives = 118/128 (92.19%), Query Frame = 1
Query:   13 SLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
            +LK+EV  LS+KRILD +E+ Y KKN +N+FVGDTVKIGVLIKEGNKER+QYYQGIILAK NSGINLTI VRK+FQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRK TTTKG+RLKQRF +K
Sbjct:    3 NLKEEVPSLSRKRILDLVEENYKKKNTANLFVGDTVKIGVLIKEGNKERVQYYQGIILAKKNSGINLTIYVRKVFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKITTTKGSRLKQRFNSK 130          
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.530e-59
Identity = 101/132 (76.52%), Postives = 114/132 (86.36%), Query Frame = 1
Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
            MKN +L++  L L   +I+DF+E TYIKK++S IFVGDTVKIGV IKEGNKERIQYYQGIIL K NSG+NLTISVRK+FQGIGVER+FLIHSPKFESIEIIKS+RVRRSKLYYLR S   KG+RLKQRF  K
Sbjct:    1 MKNSNLRQVPL-LPTAKIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLR-SIVGKGSRLKQRFRTK 130          
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 5.940e-58
Identity = 97/132 (73.48%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
            MKNL LK+  + LS K+I+D +E  Y KKN+S IFVGDT+K+GV IKEGNKER+QYYQGIIL K NSGINLTISVRK+FQGIGVERKFL+HSPK ESIE+IKS+RVRRSKLYYLR +   KG+RLKQRF  K
Sbjct:    1 MKNLKLKRPSV-LSTKKIMDSVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLR-NIIGKGSRLKQRFRTK 130          
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI)

HSP 1 Score: 184 bits (467), Expect = 7.920e-58
Identity = 99/132 (75.00%), Postives = 110/132 (83.33%), Query Frame = 1
Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
            MKNL   K+   L+ K ++D +E  +IKKN+S IFVGDTVKIGV IKEGNKERIQYYQGIIL K NSGINLTISVRK+FQGIGVER FLIHSPKFESIE+IKS+RVRRSKLYYLR S   KG+RLKQRF  K
Sbjct:    1 MKNL---KQTTFLNDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLR-SIVGKGSRLKQRFRTK 128          
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 3.640e-52
Identity = 92/132 (69.70%), Postives = 110/132 (83.33%), Query Frame = 1
Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
            M+NL+LK  +  L+ ++I++ +E+   KK+I  IFVGDTVKIG+LIKEGNKERIQYYQGIIL K NSGINL ISVRK+FQGIGVER FLIHSPKFESI +IKS+RVRRSKLYYLR +   K +RLK+RF NK
Sbjct:    1 MENLNLK-HLPSLNSEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLR-NIIGKKSRLKERFRNK 130          
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0F724_9PHAE (Ribosomal protein L19 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F724_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.260e-47
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1
Query:   43 KKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRF 387
            K   +  IE+ Y+K  +S I +GD VKIGV IKEGNK+RIQYYQG+I+ K N+GINLTI+VRK+FQGIGVERKFLIHSPKFESIEI+KS+RVRRSKLYYLRK +  KG+RLK RF
Sbjct:   58 KSDFISSIEKLYLKNQVSKIQIGDLVKIGVYIKEGNKDRIQYYQGLIIGKNNAGINLTITVRKVFQGIGVERKFLIHSPKFESIEILKSSRVRRSKLYYLRKFSE-KGSRLKPRF 171          
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A2I4Q2C7_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C7_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 6.710e-46
Identity = 77/131 (58.78%), Postives = 103/131 (78.63%), Query Frame = 1
Query:    1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTN 393
            MK L    +    + K ++D +E+ Y K +I  + VGDTVKIG+ IKEGNK+RIQYYQGI+++K N+GINL I VRK FQGIGVER+FL+HSPKF+S++++KSAR+RRSKLYYLR + + K +RLKQ+F N
Sbjct:    1 MKQLRKTNKQFSKNYKTLIDSVEKLYCKNDIKMVLVGDTVKIGISIKEGNKDRIQYYQGIVISKKNTGINLKIVVRKTFQGIGVERQFLLHSPKFQSVQVLKSARIRRSKLYYLR-NISGKASRLKQKFIN 130          
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.630e-45
Identity = 75/116 (64.66%), Postives = 97/116 (83.62%), Query Frame = 1
Query:   49 RILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
            R ++ +E+ +IKKN+  +FVGDTVK+GV ++EGNKER+Q+Y+GIILAK+ S IN TISVRK+FQGIGVER FL++SPKF SIE+IKS+R+RRSKLYYLR +   K  RLK+RF  K
Sbjct:   24 RFIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLR-NIIGKAGRLKERFKKK 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A141BSB2_9PHAE1.310e-7186.9250S ribosomal protein L19, chloroplastic n=1 Tax=S... [more]
A0A6B9TNS0_SARFS1.740e-7184.0950S ribosomal protein L19, chloroplastic n=13 Tax=... [more]
A0A2R4QPR9_9PHAE8.650e-6783.5950S ribosomal protein L19 n=3 Tax=Fucaceae TaxID=3... [more]
A0A8F0F7M0_9PHAE2.530e-5976.52Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2... [more]
A0A8F0JYX3_9PHAE5.940e-5873.48Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxI... [more]
A0A0R6LUN6_UNDPI7.920e-5875.0050S ribosomal protein L19, chloroplastic n=25 Tax=... [more]
A0A8F0FAK4_9PHAE3.640e-5269.70Ribosomal protein L19 n=1 Tax=Desmarestia aculeata... [more]
A0A8F0F724_9PHAE1.260e-4771.30Ribosomal protein L19 n=1 Tax=Protohalopteris sp. ... [more]
A0A2I4Q2C7_9PHAE6.710e-4658.7850S ribosomal protein L19, chloroplastic n=1 Tax=D... [more]
A0A1I9LVW4_9PHAE1.630e-4564.6650S ribosomal protein L19, chloroplastic n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14897contigH-elongata_contig14897:4776..5174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue2.3e-34
Seed eggNOG ortholog2880.D1J767
Preferred namerpl19
KEGG koko:K02884
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0335@1,KOG1698@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.6499684-CDS-H-elongata_contig14897:4775..51741622929881.6499684-CDS-H-elongata_contig14897:4775..5174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 4776..5174 -
1691679193.9090562-CDS-H-elongata_contig14897:4775..51741691679193.9090562-CDS-H-elongata_contig14897:4775..5174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 4776..5174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14897.3282.1prot_H-elongata_contig14897.3282.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14897 4776..5174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14897.3282.1

>prot_H-elongata_contig14897.3282.1 ID=prot_H-elongata_contig14897.3282.1|Name=mRNA_H-elongata_contig14897.3282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGN
KERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEI
IKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK*
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mRNA from alignment at H-elongata_contig14897:4776..5174-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14897.3282.1 ID=mRNA_H-elongata_contig14897.3282.1|Name=mRNA_H-elongata_contig14897.3282.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig14897:4776..5174- (Himanthalia elongata Himel1 dioecious)
ATGAAAAACCTAAGTTTAAAAAAAGAAGTTCTACATTTATCAAAAAAAAG AATCCTAGATTTTATTGAACAAACTTATATTAAAAAAAATATCTCAAATA TATTTGTAGGGGACACTGTAAAAATAGGAGTATTAATTAAAGAAGGAAAT AAAGAAAGAATCCAATATTATCAAGGTATTATTCTTGCTAAAACTAATAG TGGAATTAATTTAACAATTTCTGTTCGAAAAATATTTCAAGGTATTGGTG TTGAAAGAAAATTTCTAATACACTCACCTAAATTTGAATCTATTGAAATA ATTAAATCTGCTCGTGTACGAAGATCTAAATTATACTATTTACGCAAAAG TACTACAACTAAAGGAAATCGTTTAAAACAAAGATTTACTAATAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig14897:4776..5174-

>mRNA_H-elongata_contig14897.3282.1 ID=mRNA_H-elongata_contig14897.3282.1|Name=mRNA_H-elongata_contig14897.3282.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig14897:4776..5174- (Himanthalia elongata Himel1 dioecious)
ATGAAAAACCTAAGTTTAAAAAAAGAAGTTCTACATTTATCAAAAAAAAG
AATCCTAGATTTTATTGAACAAACTTATATTAAAAAAAATATCTCAAATA
TATTTGTAGGGGACACTGTAAAAATAGGAGTATTAATTAAAGAAGGAAAT
AAAGAAAGAATCCAATATTATCAAGGTATTATTCTTGCTAAAACTAATAG
TGGAATTAATTTAACAATTTCTGTTCGAAAAATATTTCAAGGTATTGGTG
TTGAAAGAAAATTTCTAATACACTCACCTAAATTTGAATCTATTGAAATA
ATTAAATCTGCTCGTGTACGAAGATCTAAATTATACTATTTACGCAAAAG
TACTACAACTAAAGGAAATCGTTTAAAACAAAGATTTACTAATAAATAAA
TGAAAAACCTAAGTTTAAAAAAAGAAGTTCTACATTTATCAAAAAAAAGA
ATCCTAGATTTTATTGAACAAACTTATATTAAAAAAAATATCTCAAATAT
ATTTGTAGGGGACACTGTAAAAATAGGAGTATTAATTAAAGAAGGAAATA
AAGAAAGAATCCAATATTATCAAGGTATTATTCTTGCTAAAACTAATAGT
GGAATTAATTTAACAATTTCTGTTCGAAAAATATTTCAAGGTATTGGTGT
TGAAAGAAAATTTCTAATACACTCACCTAAATTTGAATCTATTGAAATAA
TTAAATCTGCTCGTGTACGAAGATCTAAATTATACTATTTACGCAAAAGT
ACTACAACTAAAGGAAATCGTTTAAAACAAAGATTTACTAATAAATAA
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