mRNA_H-elongata_contig14897.3282.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.310e-71 Identity = 113/130 (86.92%), Postives = 123/130 (94.62%), Query Frame = 1
Query: 7 NLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
NL+LK++VL LSKK+IL +EQTYIKKNI +FVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIG+ERKFLIHSPKFES+EIIKSARVRRSKLYYLRK+TTTKG+RLKQRF K
Sbjct: 5 NLNLKEKVLSLSKKKILALVEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 134
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A6B9TNS0_SARFS (50S ribosomal protein L19, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TNS0_SARFS) HSP 1 Score: 219 bits (557), Expect = 1.740e-71 Identity = 111/132 (84.09%), Postives = 126/132 (95.45%), Query Frame = 1
Query: 1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
MKNL+LK++VL+LSKK+IL +EQTYIKK+I +FVGDTVKIGVLIKEGNKERIQYYQGIIL+KTNSGINLTISVRKIFQGIG+ERKFLIHSPKFES+++IKSARVRRSKLYYLRK+TTTKG+RLKQRF K
Sbjct: 1 MKNLNLKEKVLYLSKKKILALVEQTYIKKSIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILSKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESLQVIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 132
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A2R4QPR9_9PHAE (50S ribosomal protein L19 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPR9_9PHAE) HSP 1 Score: 207 bits (526), Expect = 8.650e-67 Identity = 107/128 (83.59%), Postives = 118/128 (92.19%), Query Frame = 1
Query: 13 SLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
+LK+EV LS+KRILD +E+ Y KKN +N+FVGDTVKIGVLIKEGNKER+QYYQGIILAK NSGINLTI VRK+FQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRK TTTKG+RLKQRF +K
Sbjct: 3 NLKEEVPSLSRKRILDLVEENYKKKNTANLFVGDTVKIGVLIKEGNKERVQYYQGIILAKKNSGINLTIYVRKVFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKITTTKGSRLKQRFNSK 130
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE) HSP 1 Score: 188 bits (477), Expect = 2.530e-59 Identity = 101/132 (76.52%), Postives = 114/132 (86.36%), Query Frame = 1
Query: 1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
MKN +L++ L L +I+DF+E TYIKK++S IFVGDTVKIGV IKEGNKERIQYYQGIIL K NSG+NLTISVRK+FQGIGVER+FLIHSPKFESIEIIKS+RVRRSKLYYLR S KG+RLKQRF K
Sbjct: 1 MKNSNLRQVPL-LPTAKIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLR-SIVGKGSRLKQRFRTK 130
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE) HSP 1 Score: 184 bits (468), Expect = 5.940e-58 Identity = 97/132 (73.48%), Postives = 112/132 (84.85%), Query Frame = 1
Query: 1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
MKNL LK+ + LS K+I+D +E Y KKN+S IFVGDT+K+GV IKEGNKER+QYYQGIIL K NSGINLTISVRK+FQGIGVERKFL+HSPK ESIE+IKS+RVRRSKLYYLR + KG+RLKQRF K
Sbjct: 1 MKNLKLKRPSV-LSTKKIMDSVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLR-NIIGKGSRLKQRFRTK 130
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI) HSP 1 Score: 184 bits (467), Expect = 7.920e-58 Identity = 99/132 (75.00%), Postives = 110/132 (83.33%), Query Frame = 1
Query: 1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
MKNL K+ L+ K ++D +E +IKKN+S IFVGDTVKIGV IKEGNKERIQYYQGIIL K NSGINLTISVRK+FQGIGVER FLIHSPKFESIE+IKS+RVRRSKLYYLR S KG+RLKQRF K
Sbjct: 1 MKNL---KQTTFLNDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLR-SIVGKGSRLKQRFRTK 128
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE) HSP 1 Score: 170 bits (430), Expect = 3.640e-52 Identity = 92/132 (69.70%), Postives = 110/132 (83.33%), Query Frame = 1
Query: 1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
M+NL+LK + L+ ++I++ +E+ KK+I IFVGDTVKIG+LIKEGNKERIQYYQGIIL K NSGINL ISVRK+FQGIGVER FLIHSPKFESI +IKS+RVRRSKLYYLR + K +RLK+RF NK
Sbjct: 1 MENLNLK-HLPSLNSEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLR-NIIGKKSRLKERFRNK 130
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A8F0F724_9PHAE (Ribosomal protein L19 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F724_9PHAE) HSP 1 Score: 160 bits (404), Expect = 1.260e-47 Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1
Query: 43 KKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRF 387
K + IE+ Y+K +S I +GD VKIGV IKEGNK+RIQYYQG+I+ K N+GINLTI+VRK+FQGIGVERKFLIHSPKFESIEI+KS+RVRRSKLYYLRK + KG+RLK RF
Sbjct: 58 KSDFISSIEKLYLKNQVSKIQIGDLVKIGVYIKEGNKDRIQYYQGLIIGKNNAGINLTITVRKVFQGIGVERKFLIHSPKFESIEILKSSRVRRSKLYYLRKFSE-KGSRLKPRF 171
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A2I4Q2C7_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C7_9PHAE) HSP 1 Score: 154 bits (389), Expect = 6.710e-46 Identity = 77/131 (58.78%), Postives = 103/131 (78.63%), Query Frame = 1
Query: 1 MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTN 393
MK L + + K ++D +E+ Y K +I + VGDTVKIG+ IKEGNK+RIQYYQGI+++K N+GINL I VRK FQGIGVER+FL+HSPKF+S++++KSAR+RRSKLYYLR + + K +RLKQ+F N
Sbjct: 1 MKQLRKTNKQFSKNYKTLIDSVEKLYCKNDIKMVLVGDTVKIGISIKEGNKDRIQYYQGIVISKKNTGINLKIVVRKTFQGIGVERQFLLHSPKFQSVQVLKSARIRRSKLYYLR-NISGKASRLKQKFIN 130
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.630e-45 Identity = 75/116 (64.66%), Postives = 97/116 (83.62%), Query Frame = 1
Query: 49 RILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKSTTTKGNRLKQRFTNK 396
R ++ +E+ +IKKN+ +FVGDTVK+GV ++EGNKER+Q+Y+GIILAK+ S IN TISVRK+FQGIGVER FL++SPKF SIE+IKS+R+RRSKLYYLR + K RLK+RF K
Sbjct: 24 RFIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLR-NIIGKAGRLKERFKKK 138 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14897.3282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14897.3282.1 >prot_H-elongata_contig14897.3282.1 ID=prot_H-elongata_contig14897.3282.1|Name=mRNA_H-elongata_contig14897.3282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp MKNLSLKKEVLHLSKKRILDFIEQTYIKKNISNIFVGDTVKIGVLIKEGNback to top mRNA from alignment at H-elongata_contig14897:4776..5174- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14897.3282.1 ID=mRNA_H-elongata_contig14897.3282.1|Name=mRNA_H-elongata_contig14897.3282.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig14897:4776..5174- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14897:4776..5174- >mRNA_H-elongata_contig14897.3282.1 ID=mRNA_H-elongata_contig14897.3282.1|Name=mRNA_H-elongata_contig14897.3282.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig14897:4776..5174- (Himanthalia elongata Himel1 dioecious)back to top |