prot_H-elongata_contig14897.3280.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig14897.3280.1
Unique Name	prot_H-elongata_contig14897.3280.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	161

Homology

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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A1L2F1Q1_9PHAE (Cytochrome b6-f complex subunit 4 n=58 Tax=Stramenopiles TaxID=33634 RepID=A0A1L2F1Q1_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 2.830e-113
Identity = 155/160 (96.88%), Postives = 160/160 (100.00%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 160
            MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSA+GEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMA+VPAGLITVPFIENVNKFQNPFRRPVAST+FLIGTF+AIWLGIGACLPI+KALTLGLF
Sbjct:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSAIGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPAGLITVPFIENVNKFQNPFRRPVASTVFLIGTFIAIWLGIGACLPINKALTLGLF 160

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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A7U0KT28_OLILU (Cytochrome b6-f complex subunit 4 n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KT28_OLILU)

HSP 1 Score: 302 bits (774), Expect = 1.150e-103
Identity = 139/160 (86.88%), Postives = 154/160 (96.25%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 160
            MSI+KKPDL+DPKLRAKLAKGMGHNYYGEPAWPND+ Y+FP+CILGTF I+IGLA++EPSALGEKA+PFATPLEILPEWYFFPTFN+LRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRP+AS +FL+GT +AIWLGIGA +PI KALTLGLF
Sbjct:    1 MSIIKKPDLSDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVCILGTFSILIGLAILEPSALGEKADPFATPLEILPEWYFFPTFNILRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPIASIVFLLGTVIAIWLGIGATMPIDKALTLGLF 160

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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: B2XTC2_HETAK (Cytochrome b6-f complex subunit 4 n=4 Tax=Ochrophyta TaxID=2696291 RepID=B2XTC2_HETAK)

HSP 1 Score: 300 bits (769), Expect = 6.640e-103
Identity = 139/160 (86.88%), Postives = 152/160 (95.00%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 160
            MS++KKPDLTDPKLRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGTF IV GLAV+EPSALGE ANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVL+MAAVP GLITVPFIEN+NKFQNPFRRP+AST+FL GT VAIWLGIGACLPI++A+TLGLF
Sbjct:    1 MSVIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTFSIVTGLAVLEPSALGEPANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLSMAAVPLGLITVPFIENINKFQNPFRRPIASTVFLFGTVVAIWLGIGACLPINQAVTLGLF 160

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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A516ZA44_9STRA (Cytochrome b6-f complex subunit 4 n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA44_9STRA)

HSP 1 Score: 295 bits (756), Expect = 6.370e-101
Identity = 137/160 (85.62%), Postives = 149/160 (93.12%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 160
            MS++KKPDLTDPKLRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGTF I+IGLAV+EPSALGEKA+PFATPLEILPEWYFFPTFNLLRVLPNKLLGV+AMAAVPAGLITVPFIENVNKFQNPFRRP+A  +FL GT  AIW GIGACLPI  A+TLGLF
Sbjct:    1 MSVIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTFAILIGLAVLEPSALGEKADPFATPLEILPEWYFFPTFNLLRVLPNKLLGVIAMAAVPAGLITVPFIENVNKFQNPFRRPLAMAVFLFGTAFAIWFGIGACLPIKDAVTLGLF 160

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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A1X9PVG8_9RHOD (Cytochrome b6-f complex subunit 4 n=1 Tax=Bulboplastis apyrenoidosa TaxID=1070855 RepID=A0A1X9PVG8_9RHOD)

HSP 1 Score: 293 bits (751), Expect = 3.690e-100
Identity = 135/160 (84.38%), Postives = 148/160 (92.50%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 160
            MS+LKKPDLTDPKLRAKLAKGMGHNYYGEPAWPND+ YMFP+CILGT    +GLAVMEPSALGE +NPFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MAAVPAGLITVPF+ENVNKFQNPFRRP+A  ++L GT  +IWLGIGA LPI+KALTLGLF
Sbjct:    1 MSVLKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYMFPVCILGTIACCVGLAVMEPSALGEPSNPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLITVPFLENVNKFQNPFRRPLAMAVYLTGTVTSIWLGIGATLPINKALTLGLF 160

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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A0D3M5D2_9STRA (Cytochrome b6-f complex subunit 4 n=17 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A0D3M5D2_9STRA)

HSP 1 Score: 292 bits (748), Expect = 1.060e-99
Identity = 133/160 (83.12%), Postives = 150/160 (93.75%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 160
            MS++KKPDLT+P LRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGTF +VIGL+ +EPSA+GEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGV+AMAAVPAGL+TVPFIEN+N FQNPFRRP+AS +FLIGT  AIW GIGAC+PISKA+TLGLF
Sbjct:    1 MSVIKKPDLTNPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTFALVIGLSTLEPSAIGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVIAMAAVPAGLLTVPFIENINTFQNPFRRPIASFMFLIGTVFAIWFGIGACMPISKAVTLGLF 160

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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: PETD_PORPU (Cytochrome b6-f complex subunit 4 n=14 Tax=Bangiaceae TaxID=31345 RepID=PETD_PORPU)

HSP 1 Score: 290 bits (742), Expect = 8.690e-99
Identity = 133/160 (83.12%), Postives = 149/160 (93.12%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 160
            MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT    IGLA++EPS+LGEK+NPFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MAAVPAGL+TVPFIENVNKFQNPFRRP+A+TIFLI T + IWLGIGA +PI+ A+TLGLF
Sbjct:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYVFPVVILGTIACSIGLAILEPSSLGEKSNPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLLTVPFIENVNKFQNPFRRPIATTIFLISTVITIWLGIGATMPINNAITLGLF 160

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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: M1K3S0_DIALT (Cytochrome b6-f complex subunit 4 n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1K3S0_DIALT)

HSP 1 Score: 290 bits (741), Expect = 1.230e-98
Identity = 132/160 (82.50%), Postives = 151/160 (94.38%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 160
            MSILKKPDLTD KLRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT   ++GL+V+EPS+LGEKA+PFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MAAVPAGLITVPF+ENVNKFQNPFRRP+AS  F++GTF+AIWLGIGA +PI++ALTLGLF
Sbjct:    1 MSILKKPDLTDAKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACIVGLSVLEPSSLGEKADPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLITVPFLENVNKFQNPFRRPIASLTFVLGTFIAIWLGIGATMPINQALTLGLF 160

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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A1C9CCJ2_9RHOD (Cytochrome b6-f complex subunit 4 n=7 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCJ2_9RHOD)

HSP 1 Score: 289 bits (739), Expect = 2.490e-98
Identity = 134/160 (83.75%), Postives = 148/160 (92.50%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 160
            MS+LKKPDLTDPKLRAKLAKGMGHNYYGEPAWPND+ Y FPI ILGT   +IGLA++EPSALGEK++PFATPLEILPEWY FPTFNLLRV+PNKL+GVL+MAAVPAGLI VPFIENVNKFQNPFRRPVAST+FL+GT  AIWLGIGA  PIS+A+TLGLF
Sbjct:    1 MSVLKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYTFPIVILGTIACLIGLAILEPSALGEKSDPFATPLEILPEWYLFPTFNLLRVIPNKLIGVLSMAAVPAGLIAVPFIENVNKFQNPFRRPVASTVFLVGTVAAIWLGIGATKPISEAITLGLF 160

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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: PETD_EMIHU (Cytochrome b6-f complex subunit 4 n=13 Tax=cellular organisms TaxID=131567 RepID=PETD_EMIHU)

HSP 1 Score: 288 bits (737), Expect = 5.030e-98
Identity = 133/160 (83.12%), Postives = 145/160 (90.62%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 160
            MSILKKPDL DPKLRAKLAKGMGHNYYGEPAWPND+ Y+FP+CILGT    IGL V+EP+ LGEKA+PFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MAAVP GLITVPFIENVNKFQNPFRRPVAS +FL GTF A WLGIGA +PI++ALTLG F
Sbjct:    1 MSILKKPDLADPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVCILGTIACCIGLGVLEPTPLGEKADPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPIGLITVPFIENVNKFQNPFRRPVASLVFLFGTFTAFWLGIGATMPITQALTLGFF 160

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1L2F1Q1_9PHAE	2.830e-113	96.88	Cytochrome b6-f complex subunit 4 n=58 Tax=Stramen...	[more]
A0A7U0KT28_OLILU	1.150e-103	86.88	Cytochrome b6-f complex subunit 4 n=1 Tax=Olisthod...	[more]
B2XTC2_HETAK	6.640e-103	86.88	Cytochrome b6-f complex subunit 4 n=4 Tax=Ochrophy...	[more]
A0A516ZA44_9STRA	6.370e-101	85.63	Cytochrome b6-f complex subunit 4 n=2 Tax=Dictyoch...	[more]
A0A1X9PVG8_9RHOD	3.690e-100	84.38	Cytochrome b6-f complex subunit 4 n=1 Tax=Bulbopla...	[more]
A0A0D3M5D2_9STRA	1.060e-99	83.13	Cytochrome b6-f complex subunit 4 n=17 Tax=Eustigm...	[more]
PETD_PORPU	8.690e-99	83.13	Cytochrome b6-f complex subunit 4 n=14 Tax=Bangiac...	[more]
M1K3S0_DIALT	1.230e-98	82.50	Cytochrome b6-f complex subunit 4 n=2 Tax=Pavlovac...	[more]
A0A1C9CCJ2_9RHOD	2.490e-98	83.75	Cytochrome b6-f complex subunit 4 n=7 Tax=Rhodophy...	[more]
PETD_EMIHU	5.030e-98	83.13	Cytochrome b6-f complex subunit 4 n=13 Tax=cellula...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.510		coord: 9..66 e-value: 7.1E-33 score: 114.1
None	No IPR available	GENE3D	1.10.287.980		coord: 67..160 e-value: 8.0E-36 score: 124.2
None	No IPR available	PANTHER	PTHR19271	CYTOCHROME B	coord: 45..160 coord: 4..36
None	No IPR available	PANTHER	PTHR19271:SF16		coord: 45..160 coord: 4..36
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 58..94
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 152..160
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 95..114
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 36..57
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 129..151
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 115..128
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..35
None	No IPR available	TMHMM	TMhelix		coord: 129..151
None	No IPR available	TMHMM	TMhelix		coord: 35..57
None	No IPR available	TMHMM	TMhelix		coord: 95..114
IPR005870	Cytochrome b6/f complex, subunit IV	PIRSF	PIRSF000033	Cytochrome_b6f_IV	coord: 1..160 e-value: 5.1E-95 score: 313.5
IPR005870	Cytochrome b6/f complex, subunit IV	TIGRFAM	TIGR01156	TIGR01156	coord: 1..160 e-value: 1.0E-91 score: 303.0
IPR005870	Cytochrome b6/f complex, subunit IV	HAMAP	MF_01344	Cytb6_f_subIV	coord: 1..160 score: 44.216
IPR005798	Cytochrome b/b6, C-terminal	PFAM	PF00032	Cytochrom_B_C	coord: 65..154 e-value: 2.5E-18 score: 66.3
IPR005798	Cytochrome b/b6, C-terminal	PROSITE	PS51003	CYTB_CTER	coord: 66..160 score: 15.2
IPR036150	Cytochrome b/b6, C-terminal domain superfamily	SUPERFAMILY	81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 2..158

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14897	contig	H-elongata_contig14897:3037..3519 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14897.3280.1	mRNA_H-elongata_contig14897.3280.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig14897 2408..3519 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig14897.3280.1 ID=prot_H-elongata_contig14897.3280.1|Name=mRNA_H-elongata_contig14897.3280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVI
VIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLA
MAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLP
ISKALTLGLF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005870	Cyt_b6/f_cplx_suIV
IPR005798	Cyt_b/b6_C
IPR036150	Cyt_b/b6_C_sf