mRNA_H-elongata_contig148850.3275.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148850.3275.1
Unique NamemRNA_H-elongata_contig148850.3275.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Match: A0A6H5LB27_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB27_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.970e-14
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:   13 QVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQ 129
            QV DLS EDPLEVL+RFRNV NLRLL CGGDGTVAWLLQ
Sbjct:  916 QVIDLSQEDPLEVLQRFRNVANLRLLACGGDGTVAWLLQ 954
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BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Match: D8LHV0_ECTSI (Diacylglycerol kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV0_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.980e-14
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:   13 QVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQ 129
            QV DLS EDPLEVL+RFRNV NLRLL CGGDGTVAWLLQ
Sbjct:  178 QVIDLSQEDPLEVLQRFRNVANLRLLACGGDGTVAWLLQ 216
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BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Match: A0A836CH11_9STRA (Diacylglycerol kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH11_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.110e-9
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   13 QVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQ 129
            QVADL +EDP + L+RF  VR+LR+L CGGDGTV W+L 
Sbjct:  435 QVADLGAEDPADFLRRFARVRDLRVLCCGGDGTVGWVLH 473
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BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Match: K7FC78_PELSI (Diacylglycerol kinase n=51 Tax=Archelosauria TaxID=1329799 RepID=K7FC78_PELSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.490e-8
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 LDEGQVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQV 132
            L+  QV DLS E P E L+ +R V NLRLL CGGDGTV W+L +
Sbjct:  264 LNPRQVFDLSQEGPREALELYRKVPNLRLLACGGDGTVGWILSI 307
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BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Match: UPI0006D91022 (diacylglycerol kinase iota n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D91022)

HSP 1 Score: 57.4 bits (137), Expect = 1.970e-8
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 LDEGQVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQV 132
            L+  QV DLS E P E L+ +R V NLR+L CGGDGTV W+L V
Sbjct:   30 LNPRQVFDLSKEGPKEALELYRKVPNLRILACGGDGTVGWILSV 73
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BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Match: UPI001ABED18C (diacylglycerol kinase iota isoform X1 n=5 Tax=Bufo TaxID=8383 RepID=UPI001ABED18C)

HSP 1 Score: 57.4 bits (137), Expect = 2.030e-8
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 LDEGQVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQV 132
            L+  QV DLS E P E L+ +R V NLR+L CGGDGTV W+L V
Sbjct:  417 LNPRQVFDLSQEGPREALELYRKVPNLRILACGGDGTVGWILSV 460
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BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Match: UPI001CF49BD6 (diacylglycerol kinase iota isoform X2 n=1 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF49BD6)

HSP 1 Score: 57.4 bits (137), Expect = 2.030e-8
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 LDEGQVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQV 132
            L+  QV DLS E P E L+ +R V NLR+L CGGDGTV W+L V
Sbjct:  412 LNPRQVFDLSQEGPREALELYRKVPNLRILACGGDGTVGWILSV 455
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BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Match: UPI001CF338B5 (diacylglycerol kinase iota isoform X3 n=1 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF338B5)

HSP 1 Score: 57.4 bits (137), Expect = 2.030e-8
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 LDEGQVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQV 132
            L+  QV DLS E P E L+ +R V NLR+L CGGDGTV W+L V
Sbjct:  407 LNPRQVFDLSQEGPREALELYRKVPNLRILACGGDGTVGWILSV 450
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BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Match: UPI000854F103 (diacylglycerol kinase iota isoform X1 n=5 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854F103)

HSP 1 Score: 57.4 bits (137), Expect = 2.030e-8
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 LDEGQVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQV 132
            L+  QV DLS E P E L+ +R V NLR+L CGGDGTV W+L V
Sbjct:  371 LNPRQVFDLSQEGPREALELYRKVPNLRILACGGDGTVGWILSV 414
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BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Match: H3AUT3_LATCH (Diacylglycerol kinase n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AUT3_LATCH)

HSP 1 Score: 57.4 bits (137), Expect = 2.040e-8
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 LDEGQVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQV 132
            L+  QV DLS E P E L+ +R V NLR+L CGGDGTV W+L V
Sbjct:  277 LNPRQVFDLSKEGPKEALELYRKVPNLRILACGGDGTVGWILSV 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148850.3275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB27_9PHAE2.970e-1487.18Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LHV0_ECTSI2.980e-1487.18Diacylglycerol kinase n=1 Tax=Ectocarpus siliculos... [more]
A0A836CH11_9STRA3.110e-964.10Diacylglycerol kinase n=1 Tax=Tribonema minus TaxI... [more]
K7FC78_PELSI1.490e-859.09Diacylglycerol kinase n=51 Tax=Archelosauria TaxID... [more]
UPI0006D910221.970e-859.09diacylglycerol kinase iota n=1 Tax=Latimeria chalu... [more]
UPI001ABED18C2.030e-859.09diacylglycerol kinase iota isoform X1 n=5 Tax=Bufo... [more]
UPI001CF49BD62.030e-859.09diacylglycerol kinase iota isoform X2 n=1 Tax=Bufo... [more]
UPI001CF338B52.030e-859.09diacylglycerol kinase iota isoform X3 n=1 Tax=Bufo... [more]
UPI000854F1032.030e-859.09diacylglycerol kinase iota isoform X1 n=5 Tax=Nano... [more]
H3AUT3_LATCH2.040e-859.09Diacylglycerol kinase n=2 Tax=Latimeria chalumnae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148850contigH-elongata_contig148850:396..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2e-11
Seed eggNOG ortholog2880.D8LHV0
KEGG rclassRC00002,RC00017
KEGG koko:K00901
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005488,GO:0005509,GO:0006793,GO:0006796,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009611,GO:0009628,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0022622,GO:0032501,GO:0032502,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0048364,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0099402
EggNOG free text desc.protein kinase C-activating G-protein coupled receptor signaling pathway
EggNOG OGsKOG1169@1,KOG1169@2759
EC2.7.1.107
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.1999874-CDS-H-elongata_contig148850:395..5271622929881.1999874-CDS-H-elongata_contig148850:395..527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148850 396..527 -
1691679193.730904-CDS-H-elongata_contig148850:395..5271691679193.730904-CDS-H-elongata_contig148850:395..527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148850 396..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148850.3275.1prot_H-elongata_contig148850.3275.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148850 396..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148850.3275.1

>prot_H-elongata_contig148850.3275.1 ID=prot_H-elongata_contig148850.3275.1|Name=mRNA_H-elongata_contig148850.3275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
LDEGQVADLSSEDPLEVLKRFRNVRNLRLLVCGGDGTVAWLLQV
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mRNA from alignment at H-elongata_contig148850:396..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148850.3275.1 ID=mRNA_H-elongata_contig148850.3275.1|Name=mRNA_H-elongata_contig148850.3275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig148850:396..527- (Himanthalia elongata Himel1 dioecious)
TTGGATGAGGGACAGGTCGCGGATCTCAGCTCGGAAGATCCGTTGGAAGT
GCTGAAGCGCTTTCGCAACGTTCGGAACCTGAGGCTGCTGGTGTGCGGCG
GAGATGGAACTGTGGCTTGGCTGTTGCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig148850:396..527-

>mRNA_H-elongata_contig148850.3275.1 ID=mRNA_H-elongata_contig148850.3275.1|Name=mRNA_H-elongata_contig148850.3275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig148850:396..527- (Himanthalia elongata Himel1 dioecious)
TTGGATGAGGGACAGGTCGCGGATCTCAGCTCGGAAGATCCGTTGGAAGT
GCTGAAGCGCTTTCGCAACGTTCGGAACCTGAGGCTGCTGGTGTGCGGCG
GAGATGGAACTGTGGCTTGGCTGTTGCAGGTATTGGATGAGGGACAGGTC
GCGGATCTCAGCTCGGAAGATCCGTTGGAAGTGCTGAAGCGCTTTCGCAA
CGTTCGGAACCTGAGGCTGCTGGTGTGCGGCGGAGATGGAACTGTGGCTT
GGCTGTTGCAGGTA
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