mRNA_H-elongata_contig148838.3273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148838.3273.1
Unique NamemRNA_H-elongata_contig148838.3273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig148838.3273.1 vs. uniprot
Match: D7FZ15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ15_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.710e-24
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 AIAADERAYERTVRDRRRFAQQEKSEQEAFLRERERLKAVHQMFGKKYRTPVERLEDREIDRFLEAAFAV 213
            AIAADERAYERTVRDR+ FAQQE+SEQEAFLRERER KA+HQMFGKKYRTPVE+  DRE++R L+A   +
Sbjct: 1030 AIAADERAYERTVRDRQSFAQQERSEQEAFLRERERQKALHQMFGKKYRTPVEKCRDREMERLLDATIEI 1099
[Close]
BLAST of mRNA_H-elongata_contig148838.3273.1 vs. uniprot
Match: A0A6H5KQ85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ85_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.710e-24
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 AIAADERAYERTVRDRRRFAQQEKSEQEAFLRERERLKAVHQMFGKKYRTPVERLEDREIDRFLEAAFAV 213
            AIAADERAYERTVRDR+ FAQQE+SEQEAFLRERER KA+HQMFGKKYRTPVE+  DRE++R L+A   +
Sbjct: 1290 AIAADERAYERTVRDRQSFAQQERSEQEAFLRERERQKALHQMFGKKYRTPVEKCRDREMERLLDATIEI 1359
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148838.3273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ15_ECTSI3.710e-2477.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ85_9PHAE3.710e-2477.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148838contigH-elongata_contig148838:430..1189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929880.8061829-CDS-H-elongata_contig148838:429..5731622929880.8061829-CDS-H-elongata_contig148838:429..573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148838 430..573 +
1691679193.6103866-CDS-H-elongata_contig148838:429..5731691679193.6103866-CDS-H-elongata_contig148838:429..573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148838 430..573 +
1622929880.837252-CDS-H-elongata_contig148838:1120..11891622929880.837252-CDS-H-elongata_contig148838:1120..1189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148838 1121..1189 +
1691679193.6191132-CDS-H-elongata_contig148838:1120..11891691679193.6191132-CDS-H-elongata_contig148838:1120..1189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148838 1121..1189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148838.3273.1prot_H-elongata_contig148838.3273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148838 430..1189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148838.3273.1

>prot_H-elongata_contig148838.3273.1 ID=prot_H-elongata_contig148838.3273.1|Name=mRNA_H-elongata_contig148838.3273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
KAIAADERAYERTVRDRRRFAQQEKSEQEAFLRERERLKAVHQMFGKKYR
TPVERLEDREIDRFLEAAFAV
back to top

mRNA from alignment at H-elongata_contig148838:430..1189+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148838.3273.1 ID=mRNA_H-elongata_contig148838.3273.1|Name=mRNA_H-elongata_contig148838.3273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=760bp|location=Sequence derived from alignment at H-elongata_contig148838:430..1189+ (Himanthalia elongata Himel1 dioecious)
AAGGCTATCGCTGCAGACGAGCGCGCTTACGAGCGAACTGTTCGAGACAG
GCGGAGGTTCGCGCAGCAAGAGAAGAGCGAGCAGGAGGCGTTTTTGAGGG
AGAGGGAGAGGTTGAAGGCGGTACACCAGATGTTCGGGAAGAAGGTTAGA
GACAGAAATATCATACGAATAGTAGAATAGAATAGAATTGAATAGTTGTT
GGTATGAATAGAATAGAATAATAGTTGTTAGTATGAATAGTTGATGATGC
AAGGTATTAATAGCACAGTAATAGGTGGTAACCTGCACTGAGTTGTTCGT
TTAAAGCAAGCAACCCCCCCGGCGTCATTAATTGATTGGTTGACGTGTGG
TGACGTTGCATCGCAAAAGCGGGAAGCGAACAAGCGAGGGAAGGGATGAG
CATATCGATATAATCGGGTCGAAGGGAGAAATGATGTATGGCTGTCAAGC
GTTGTGGGGTAAATAACGCTGGTACATGCAGCATCGGAACCGTCGGCAGA
GAGGGGAATTAAAATATATAAACAAATAAAATACCTTGTCTTTGAGGTTT
TTGCTCGTCGTGAGTCTCGGGAGTTCCATTCTTGCCAAGTTGCGTCCTCC
TTCCACGCCCCCGGCCGCCCCGAACGCTCAACTCACTTTTCTTGTCGTCT
TCCTCTTTCCCACCCCCCCGTTCGAAATACGCCTTTATCAGTATCGTACC
CCCGTGGAGAGACTTGAAGATCGGGAGATAGACAGGTTCCTGGAAGCCGC
CTTCGCGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig148838:430..1189+

>mRNA_H-elongata_contig148838.3273.1 ID=mRNA_H-elongata_contig148838.3273.1|Name=mRNA_H-elongata_contig148838.3273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig148838:430..1189+ (Himanthalia elongata Himel1 dioecious)
AAGGCTATCGCTGCAGACGAGCGCGCTTACGAGCGAACTGTTCGAGACAG
GCGGAGGTTCGCGCAGCAAGAGAAGAGCGAGCAGGAGGCGTTTTTGAGGG
AGAGGGAGAGGTTGAAGGCGGTACACCAGATGTTCGGGAAGAAGAAGGCT
ATCGCTGCAGACGAGCGCGCTTACGAGCGAACTGTTCGAGACAGGCGGAG
GTTCGCGCAGCAAGAGAAGAGCGAGCAGGAGGCGTTTTTGAGGGAGAGGG
AGAGGTTGAAGGCGGTACACCAGATGTTCGGGAAGAAGTATCGTACCCCC
GTGGAGAGACTTGAAGATCGGGAGATAGACAGGTTCCTGGAAGCCGCCTT
CGCGGTGTATCGTACCCCCGTGGAGAGACTTGAAGATCGGGAGATAGACA
GGTTCCTGGAAGCCGCCTTCGCGGTG
back to top