mRNA_H-elongata_contig14875.3270.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14875.3270.1
Unique NamemRNA_H-elongata_contig14875.3270.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Match: D7G0X7_ECTSI (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.230e-14
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISPG 105
            L +PWWVLPAE+LHGLT+AAMWAA+TDYAH I+PG
Sbjct:   42 LSDPWWVLPAELLHGLTFAAMWAATTDYAHGIAPG 76
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BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Match: A0A6H5K6H4_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.500e-14
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISPGTS 111
            L EPWWVLPAEVLHGLT+AAMWAA+T+YAH I+PGTS
Sbjct:  430 LREPWWVLPAEVLHGLTFAAMWAATTEYAHGIAPGTS 466
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BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Match: A0A6H5JEM5_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.320e-13
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISPG 105
            L EPWWVLP+EVLHGLT+AAMWAA+TDYAH I+PG
Sbjct:  379 LREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAPG 413
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BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Match: A0A6H5JI17_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI17_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.130e-12
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISPGTSET 117
            L +PWWVLPAE+LHGLT+AAMWAA+TDYAH I+PG  +T
Sbjct:  267 LWDPWWVLPAELLHGLTFAAMWAATTDYAHGIAPGRDQT 305
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BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Match: D7G4M5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M5_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.480e-12
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISPGTSET 117
            L +PWWVLPAE+LHGLT+AAMWAA+TDYAH I+PG  +T
Sbjct:  326 LWDPWWVLPAELLHGLTFAAMWAATTDYAHGIAPGRDQT 364
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BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Match: D7G3W1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W1_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.920e-11
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISP 102
            L +PWWVLPAEVLHGLT+AAMWAA+T+YAH I+P
Sbjct:  375 LRKPWWVLPAEVLHGLTFAAMWAATTEYAHGIAP 408
[Close]
BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Match: D7G0X9_ECTSI (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X9_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.690e-11
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISP 102
            L +PWWVLPAE+ HGLT+AAMW+A+TDYAH I+P
Sbjct:   58 LSDPWWVLPAELFHGLTFAAMWSATTDYAHGIAP 91
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BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Match: A0A8B6BMF6_MYTGA (MFS domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BMF6_MYTGA)

HSP 1 Score: 51.6 bits (122), Expect = 2.040e-6
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISP-GTSETI 120
            LE  WWVLP E+LHG+T+  MWAA+T Y   ++P G S TI
Sbjct:  514 LENAWWVLPVELLHGVTFGIMWAAATSYGSILTPEGMSGTI 554
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BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Match: A0A7M7T197_STRPU (MFS domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7T197_STRPU)

HSP 1 Score: 50.8 bits (120), Expect = 3.810e-6
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISP 102
            L+ PW V+P E+LHG+TY +MW A T Y H ISP
Sbjct:  435 LQNPWAVIPIELLHGVTYGSMWPACTSYIHLISP 468
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BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Match: A0A7S4MNN8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNN8_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 4.930e-6
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISP 102
            L+ PWWVLP E+LHGLT+ AM+AA  +Y+  + P
Sbjct:   38 LQSPWWVLPLELLHGLTFGAMYAAGINYSSNLFP 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14875.3270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G0X7_ECTSI2.230e-1480.00MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5K6H4_9PHAE9.500e-1483.78MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JEM5_9PHAE4.320e-1382.86MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JI17_9PHAE1.130e-1274.36MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G4M5_ECTSI1.480e-1274.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3W1_ECTSI1.920e-1179.41MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0X9_ECTSI2.690e-1173.53MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A8B6BMF6_MYTGA2.040e-656.10MFS domain-containing protein n=1 Tax=Mytilus gall... [more]
A0A7M7T197_STRPU3.810e-658.82MFS domain-containing protein n=1 Tax=Strongylocen... [more]
A0A7S4MNN8_9EUKA4.930e-655.88Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14875contigH-elongata_contig14875:68..193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.1e-10
Seed eggNOG ortholog2880.D7G4M5
KEGG koko:K11367
EggNOG free text desc.MFS_1 like family
EggNOG OGsKOG3762@1,KOG3762@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929880.42636-CDS-H-elongata_contig14875:67..1931622929880.42636-CDS-H-elongata_contig14875:67..193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14875 68..193 +
1691679193.4348397-CDS-H-elongata_contig14875:67..1931691679193.4348397-CDS-H-elongata_contig14875:67..193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14875 68..193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14875.3270.1prot_H-elongata_contig14875.3270.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14875 68..193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14875.3270.1

>prot_H-elongata_contig14875.3270.1 ID=prot_H-elongata_contig14875.3270.1|Name=mRNA_H-elongata_contig14875.3270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
LEEPWWVLPAEVLHGLTYAAMWAASTDYAHTISPGTSETIS*
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mRNA from alignment at H-elongata_contig14875:68..193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14875.3270.1 ID=mRNA_H-elongata_contig14875.3270.1|Name=mRNA_H-elongata_contig14875.3270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig14875:68..193+ (Himanthalia elongata Himel1 dioecious)
CTCGAGGAGCCGTGGTGGGTACTCCCAGCAGAAGTGCTGCATGGGCTCAC
CTACGCCGCCATGTGGGCCGCGAGCACCGACTACGCGCACACAATCTCGC
CAGGTACGAGCGAGACGATATCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig14875:68..193+

>mRNA_H-elongata_contig14875.3270.1 ID=mRNA_H-elongata_contig14875.3270.1|Name=mRNA_H-elongata_contig14875.3270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig14875:68..193+ (Himanthalia elongata Himel1 dioecious)
CTCGAGGAGCCGTGGTGGGTACTCCCAGCAGAAGTGCTGCATGGGCTCAC
CTACGCCGCCATGTGGGCCGCGAGCACCGACTACGCGCACACAATCTCGC
CAGGTACGAGCGAGACGATATCGTAACTCGAGGAGCCGTGGTGGGTACTC
CCAGCAGAAGTGCTGCATGGGCTCACCTACGCCGCCATGTGGGCCGCGAG
CACCGACTACGCGCACACAATCTCGCCAGGTACGAGCGAGACGATATCGT
AA
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