prot_H-elongata_contig148556.3266.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig148556.3266.1
Unique Nameprot_H-elongata_contig148556.3266.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length35
Homology
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BLAST of mRNA_H-elongata_contig148556.3266.1 vs. uniprot
Match: D7FSN0_ECTSI (Mitochondrial import inner membrane translocase subunit TIM16 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSN0_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 6.770e-8
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 
Query:    4 SPFARILAQLAVASAGIVSRAFVSAYSQAVH 34
            +PFARI+AQLAVASAGIVSRAFVSAYSQAVH
Sbjct:    3 NPFARIIAQLAVASAGIVSRAFVSAYSQAVH 33
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148556.3266.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSN0_ECTSI6.770e-893.55Mitochondrial import inner membrane translocase su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148556contigH-elongata_contig148556:98..202 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148556.3266.1mRNA_H-elongata_contig148556.3266.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig148556 98..202 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig148556.3266.1 ID=prot_H-elongata_contig148556.3266.1|Name=mRNA_H-elongata_contig148556.3266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
MVPSPFARILAQLAVASAGIVSRAFVSAYSQAVHS
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