mRNA_H-elongata_contig148501.3263.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148501.3263.1
Unique NamemRNA_H-elongata_contig148501.3263.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig148501.3263.1 vs. uniprot
Match: D7FU45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU45_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 3.200e-40
Identity = 74/114 (64.91%), Postives = 93/114 (81.58%), Query Frame = 1 
Query:    1 ITNYKVGDRLKGIVVGELEGETGRKAWVRFGVRRVKKGGRSAYVDGMIRVNRQKGIKPARMAVDKPVTVYVSKVIAAEGRLEVSLRPPKVRKPVLDTSNLLPLFDLAVGDELQG 342
            + N +VG+RLKG+VV EL+G +G+KAWVR GV R  KGG+ ++VDGMIR+N++KG+KP ++AVDKPVTVYVSKVI AEGRLEVSLR PK   P++DTS L PL DL  G+EL G
Sbjct:   73 LENLEVGERLKGVVVTELDGTSGKKAWVRVGVMRRAKGGKFSHVDGMIRLNKEKGLKPKKVAVDKPVTVYVSKVIEAEGRLEVSLRAPKPLAPIVDTSTLKPLADLKHGEELTG 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148501.3263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU45_ECTSI3.200e-4064.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148501contigH-elongata_contig148501:17..762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S1, RNA-binding domain
Ec32 orthologEc-25_000700.1
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.4436092-CDS-H-elongata_contig148501:16..1391622929879.4436092-CDS-H-elongata_contig148501:16..139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148501 17..139 -
1691679193.0167615-CDS-H-elongata_contig148501:16..1391691679193.0167615-CDS-H-elongata_contig148501:16..139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148501 17..139 -
1622929879.467405-CDS-H-elongata_contig148501:543..7621622929879.467405-CDS-H-elongata_contig148501:543..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148501 544..762 -
1691679193.024986-CDS-H-elongata_contig148501:543..7621691679193.024986-CDS-H-elongata_contig148501:543..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148501 544..762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148501.3263.1prot_H-elongata_contig148501.3263.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148501 17..762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148501.3263.1

>prot_H-elongata_contig148501.3263.1 ID=prot_H-elongata_contig148501.3263.1|Name=mRNA_H-elongata_contig148501.3263.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
ITNYKVGDRLKGIVVGELEGETGRKAWVRFGVRRVKKGGRSAYVDGMIRV
NRQKGIKPARMAVDKPVTVYVSKVIAAEGRLEVSLRPPKVRKPVLDTSNL
LPLFDLAVGDELQG
back to top

mRNA from alignment at H-elongata_contig148501:17..762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148501.3263.1 ID=mRNA_H-elongata_contig148501.3263.1|Name=mRNA_H-elongata_contig148501.3263.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=746bp|location=Sequence derived from alignment at H-elongata_contig148501:17..762- (Himanthalia elongata Himel1 dioecious)
ATTACAAATTACAAGGTGGGCGATCGCCTGAAAGGCATTGTGGTGGGCGA
GTTAGAAGGAGAGACGGGTAGGAAGGCGTGGGTGCGTTTCGGGGTGAGAA
GGGTCAAGAAGGGCGGGCGTTCCGCCTACGTGGACGGCATGATTCGCGTC
AACAGACAGAAGGGGATCAAGCCGGCTAGGATGGCCGTGGACAAGCCGGT
GACGGTTTACGTCAGCAAGGTGTCGCCGCGCCCATCCCTTTAAAGTTATA
TAGAATGCTGTCGCTGAGTCACAAAGGCAATTGTTTCATCGCTGGAGGGA
GGGGGCGTACTCGGGGTAGGGGGGGGGGGGGGCGTACTCAAGTTCTGCAT
GCCTTATAAAAGCGCCGTGAGACCATTCACCACATGTCCTCGGGAGGGAG
GACGGAGCATTGTTCCTATATGAGGTGGAGAGGTTCGAAGTCATGGTGCC
TGACGGGCTATATACTGCTGTGCCACTAGTGCCACCCGTCTCGTATGCTG
CCCATGCTCCAGGTCACTTGCGTGGTATCCCCGCCGACGTTCACCGCATA
AAATCGAGCAGGCGTGTCTTTTTCCAACCCTATCCGTGGCTGAATCGTTT
CCCACCGCAACGCGTCGGGGCAGGTCATTGCCGCCGAAGGAAGGCTGGAA
GTGTCGCTTCGGCCTCCCAAGGTTAGAAAACCGGTCCTGGACACTTCGAA
TCTTCTCCCTCTTTTCGACCTCGCCGTCGGCGACGAGTTGCAAGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig148501:17..762-

>mRNA_H-elongata_contig148501.3263.1 ID=mRNA_H-elongata_contig148501.3263.1|Name=mRNA_H-elongata_contig148501.3263.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig148501:17..762- (Himanthalia elongata Himel1 dioecious)
ATTACAAATTACAAGGTGGGCGATCGCCTGAAAGGCATTGTGGTGGGCGA
GTTAGAAGGAGAGACGGGTAGGAAGGCGTGGGTGCGTTTCGGGGTGAGAA
GGGTCAAGAAGGGCGGGCGTTCCGCCTACGTGGACGGCATGATTCGCGTC
AACAGACAGAAGGGGATCAAGCCGGCTAGGATGGCCGTGGACAAGCCGGT
GACGGTTTACGTCAGCAAGATTACAAATTACAAGGTGGGCGATCGCCTGA
AAGGCATTGTGGTGGGCGAGTTAGAAGGAGAGACGGGTAGGAAGGCGTGG
GTGCGTTTCGGGGTGAGAAGGGTCAAGAAGGGCGGGCGTTCCGCCTACGT
GGACGGCATGATTCGCGTCAACAGACAGAAGGGGATCAAGCCGGCTAGGA
TGGCCGTGGACAAGCCGGTGACGGTTTACGTCAGCAAGGTCATTGCCGCC
GAAGGAAGGCTGGAAGTGTCGCTTCGGCCTCCCAAGGTTAGAAAACCGGT
CCTGGACACTTCGAATCTTCTCCCTCTTTTCGACCTCGCCGTCGGCGACG
AGTTGCAAGGTGTCATTGCCGCCGAAGGAAGGCTGGAAGTGTCGCTTCGG
CCTCCCAAGGTTAGAAAACCGGTCCTGGACACTTCGAATCTTCTCCCTCT
TTTCGACCTCGCCGTCGGCGACGAGTTGCAAGGT
back to top