mRNA_H-elongata_contig148459.3260.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148459.3260.1
Unique NamemRNA_H-elongata_contig148459.3260.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 2.750e-82
Identity = 127/235 (54.04%), Postives = 175/235 (74.47%), Query Frame = 1
Query:    1 TGSTTQGTKPLRAVAKIGQNVTGQMRSDSRENVTLVATISADGRVFDPLVVFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKLKLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDVTAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMASFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL 705
            TGST+QGTK ++A+A+ GQ V G MRS+SRE VT+V TISA G    P +++KG+R+Q DWV   +GPPNA    T+S F++GTVF++Y++DFH+QL    L++G PH L+L+ HA+H+T E IKLAR L IVL+Q+PSH+ H+ Q LDV +FGS+K  +TK L+AFP  +GGR+P K D++ ++G A+  SFS QQN++SF G GLW VD +RA+GRL+   KRKER   R P+
Sbjct:  171 TGSTSQGTKTMKAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEQQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPV 405          
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 4.770e-82
Identity = 122/235 (51.91%), Postives = 172/235 (73.19%), Query Frame = 1
Query:    1 TGSTTQGTKPLRAVAKIGQNVTGQMRSDSRENVTLVATISADGRVFDPLVVFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKLKLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDVTAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMASFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL 705
            TGST+QGTK ++ + + GQ V G MRS+SRENVT+V TISA G    P +++KG+R+Q DWV   +GPPNA     +S F++GTVF++Y++DFH+QL    L++G PH L+L+ HA+H+T E +KLAR L IVL+Q+PSH+ H+ Q LDV +FGS+K  +TK L+AFP  +GGR+P K D++ ++G A+  SFS ++N +SF G GLW VD +RA+GRL+   KRKER   R P+
Sbjct:  171 TGSTSQGTKTMKVITESGQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEERNTSSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPV 405          
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 6.210e-81
Identity = 123/234 (52.56%), Postives = 173/234 (73.93%), Query Frame = 1
Query:    4 GSTTQGTKPLRAVAKIGQNVTGQMRSDSRENVTLVATISADGRVFDPLVVFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKLKLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDVTAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMASFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL 705
            GST QGTK ++ +A+ GQ V G MRS+SR+NVT+V TISA G    P +++KG+R+Q DWV   +GPPNA    T+S F++GTVF++Y++DFH+QL    L++G PH L+L+ HA+H+T E +KLAR L IVL+Q+PSH+ H+ Q LDV +FGS+K  +TK L+AFP  +GGR+P K D++ ++G A+  SFS +QN++SF G GLW VD +RA+GRL+   KRKER   R P+
Sbjct:  180 GSTPQGTKTMKVIAESGQKVVGAMRSNSRDNVTVVVTISAAGATLAPWIIYKGQRMQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKWEITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPV 413          
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Match: A0A6H5J9B8_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B8_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 2.320e-80
Identity = 123/225 (54.67%), Postives = 164/225 (72.89%), Query Frame = 1
Query:   31 LRAVAKIGQNVTGQMRSDSRENVTLVATISADGRVFDPLVVFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKLKLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDVTAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMASFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL 705
            ++  A+ GQ V   MRS+SREN T+V TISA+G  + P ++F+G+R+QPDW A+ +GP +A Y  T+S F++G VF+ Y KDFHKQL    +LDGKPH L+L++HA++++ E IKLA +L I+LFQLPSHT HITQ LDV AFG++K  VT  L  +   +GG LPLKRD+  VI  A++ SF+P++N ASF G GLW VD DRAL RL+ T+KRKE P  R PL
Sbjct:    1 MKTFAEAGQTVVESMRSNSRENTTVVTTISANGATWAPTIIFRGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYFKDFHKQLDDRGVLDGKPHTLVLDEHASYVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTTVLQDYYHANGGLLPLKRDVPGVIAAAWQRSFTPERNKASFGGVGLWPVDMDRALTRLQGTAKRKEGPTGRPPL 225          
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 2.440e-80
Identity = 126/225 (56.00%), Postives = 164/225 (72.89%), Query Frame = 1
Query:   31 LRAVAKIGQNVTGQMRSDSRENVTLVATISADGRVFDPLVVFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKLKLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDVTAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMASFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL 705
            ++A A+ GQ V   MRS+SREN T+V TISA+G  + P ++FKG+R+QPDW A+ +GP +A Y  T+S F++G VF+ YLKDFHKQL    +LDGKPH L+L+ HA+H++ E IKLA  L I+LF+LPSHT HITQ LDV AFG++K  VTK L  +   +GG LPLKRD+  VI  A++ S +P++N ASF G GLW VD DRAL RL+ T+KRKE P  R PL
Sbjct:    1 MKAFAEAGQKVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVLDGHASHVSYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQNSLTPERNKASFGGAGLWPVDMDRALTRLQGTAKRKEGPTGRPPL 225          
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 3.010e-80
Identity = 130/235 (55.32%), Postives = 169/235 (71.91%), Query Frame = 1
Query:    1 TGSTTQGTKPLRAVAKIGQNVTGQMRSDSRENVTLVATISADGRVFDPLVVFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKLKLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDVTAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMASFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL 705
            TG T QGTK ++A A+ GQ V   MRS+S EN T+V TISA+G  + P ++FKG+R+QPDW A+ +GP +A Y  T+S F++G VF+ YLKDFHKQL    +LDGKPH L+L+ HA+H++ E IKLA +L I+LFQLPSHT HITQ LDV AFG++K  VTK L  +   +GG LPLKRD+  VI  A++ S + ++N ASF G GL  VD DRAL RL+ T+KR+E P  R PL
Sbjct:  165 TGPTPQGTKTMKAFAEAGQKVVESMRSNSLENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYLKDFHKQLDDRGVLDGKPHTLVLDGHASHVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQRSLTLERNNASFGGAGLRPVDMDRALTRLQGTAKREEGPTGRPPL 399          
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Match: A0A6H5JYS0_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS0_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.750e-79
Identity = 129/234 (55.13%), Postives = 166/234 (70.94%), Query Frame = 1
Query:    7 STTQGTKPLRAVAKIGQNVTGQMRSDSRENVT-LVATISADGRVFDPLVVFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKLKLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDVTAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMASFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL 705
            +T QGTK  +A A+ GQ V G MRS+SREN T +V TISADG  + P ++FKG R+Q DW  + +GP  A Y  T+S F++G VF+ YLKDFHKQ G+  LLDGKPH LLL+ H++H+ +E  +LA  L I+L QLPSHT HITQ LDV AFG +K  VT+ L +F  N GG LPLKRD+  VI  A++ SF+P+ N +SF G GLW V+ +RALGRLK T+ +KER  +R PL
Sbjct:  147 NTPQGTKTTKAFAESGQKVVGSMRSNSRENTTTVVVTISADGHTWAPTIIFKGHRLQADWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQFGERGLLDGKPHILLLDGHSSHVRVEVTRLAMNLKIILIQLPSHTSHITQPLDVVAFGRFKKSVTRVLASFYHNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKERALGRLKGTANKKERRAERPPL 380          
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 1.820e-79
Identity = 127/235 (54.04%), Postives = 172/235 (73.19%), Query Frame = 1
Query:    1 TGSTTQGTKPLRAVAKIGQNVTGQMRSDSRENVTLVATISADGRVFDPLVVFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKLKLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDVTAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMASFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL 705
            TG+T QG K ++A  + GQ V   +R++SREN TLV TISADG  + P ++FKG+R+QPDW A+++GPP+A Y  T+S F++G VF+ YLKDFH+QL K  L+DGKPH LLL+ HA+H+++E I+LA +L IVLFQLPSHT HITQ LDV AFG++K  VTK L+ +    GG LP KRD+  VI  A+ A+F+ ++N +SF G GLW V+ +RA+ RL+ T+KR E    R PL
Sbjct:  169 TGTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPL 403          
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Match: A0A6H5KH00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH00_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 3.100e-79
Identity = 129/234 (55.13%), Postives = 160/234 (68.38%), Query Frame = 1
Query:    4 GSTTQGTKPLRAVAKIGQNVTGQMRSDSRENVTLVATISADGRVFDPLVVFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKLKLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDVTAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMASFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL 705
            G T QG +  +  A+ GQ V  QMRS SREN T++ TI+A G V  P ++FKG+R   DW+  + GPP ATY  TES F+ G VF+ Y+ DFH+QL K  LLDGKPH L+L+ HA+H++LE ++LAR L I L QLPSH  HITQ LDV  FG +K  +TKA+ AFP  HGG LP KRD+  VIG+A+  SF+P  N ASF G GLW VD +RAL RL +  KRKER  DR PL
Sbjct:   98 GGTIQGAQGQQVYAERGQPVVPQMRSTSRENCTIITTINAAGAVLAPTIIFKGQRFNGDWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKP-KRKERETDRPPL 330          
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 1.150e-77
Identity = 127/235 (54.04%), Postives = 172/235 (73.19%), Query Frame = 1
Query:    1 TGSTTQGTKPLRAVAKIGQNVTGQMRSDSRENVTLVATISADGRVFDPLVVFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKLKLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDVTAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMASFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL 705
            TG+T QG K ++A  + GQ V   +R++SREN TLV TISADG  + P ++FKG+R+QPDW A+++GPP+A Y  T+S F++G VF+ YLKDFH+QL K  L+DGKPH LLL+ HA+H+++E I+LA +L IVLFQLPSHT HITQ LDV AFG++K  VTK L+ +    GG LP KRD+  VI  A+ A+F+ ++N +SF G GLW V+ +RA+ RL+ T+KR E    R PL
Sbjct:  410 TGTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPL 644          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148459.3260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B2KWI5_ECTSI2.750e-8254.04Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L5E2_9PHAE4.770e-8251.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK80_9PHAE6.210e-8152.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9B8_9PHAE2.320e-8054.67DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KGL1_9PHAE2.440e-8056.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JBS6_9PHAE3.010e-8055.32DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JYS0_9PHAE1.750e-7955.13DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JV04_9PHAE1.820e-7954.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH00_9PHAE3.100e-7955.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ12_9PHAE1.150e-7754.04Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148459contigH-elongata_contig148459:618..1322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue9.4e-39
Seed eggNOG ortholog2880.D8LN28
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2CZS4@1,2SBGG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.1106358-CDS-H-elongata_contig148459:617..13221622929879.1106358-CDS-H-elongata_contig148459:617..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148459 618..1322 +
1691679192.8888085-CDS-H-elongata_contig148459:617..13221691679192.8888085-CDS-H-elongata_contig148459:617..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148459 618..1322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148459.3260.1prot_H-elongata_contig148459.3260.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148459 618..1322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148459.3260.1

>prot_H-elongata_contig148459.3260.1 ID=prot_H-elongata_contig148459.3260.1|Name=mRNA_H-elongata_contig148459.3260.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
TGSTTQGTKPLRAVAKIGQNVTGQMRSDSRENVTLVATISADGRVFDPLV
VFKGRRVQPDWVAQESGPPNATYVATESLFIEGTVFLDYLKDFHKQLGKL
KLLDGKPHALLLNDHAAHMTLEAIKLARKLGIVLFQLPSHTPHITQSLDV
TAFGSYKSRVTKALTAFPGNHGGRLPLKRDIVIVIGKAFRASFSPQQNMA
SFEGTGLWSVDADRALGRLKRTSKRKERPNDREPL
back to top

mRNA from alignment at H-elongata_contig148459:618..1322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148459.3260.1 ID=mRNA_H-elongata_contig148459.3260.1|Name=mRNA_H-elongata_contig148459.3260.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at H-elongata_contig148459:618..1322+ (Himanthalia elongata Himel1 dioecious)
ACAGGAAGCACCACACAGGGCACGAAGCCGCTGAGGGCGGTTGCAAAAAT AGGGCAAAATGTCACAGGACAGATGCGCTCCGACTCGCGGGAGAACGTCA CACTGGTGGCCACCATAAGCGCTGATGGCCGCGTGTTTGACCCGCTGGTG GTATTCAAAGGGCGGCGGGTGCAGCCGGATTGGGTGGCTCAGGAAAGCGG CCCCCCGAACGCGACATACGTCGCCACAGAGTCCTTGTTCATAGAGGGTA CAGTGTTCCTCGACTACCTCAAAGACTTCCACAAGCAGCTTGGCAAGCTC AAGTTGCTCGATGGCAAACCGCATGCGCTCCTGCTCAATGACCACGCCGC GCACATGACGCTCGAAGCCATCAAGTTGGCCAGAAAACTCGGTATCGTCC TCTTTCAGCTGCCGTCCCACACTCCCCACATCACCCAGTCGTTGGATGTG ACTGCGTTCGGATCGTACAAGTCGAGGGTCACGAAAGCGCTCACGGCCTT TCCGGGCAACCACGGAGGCAGATTGCCCTTGAAGCGCGACATAGTGATCG TGATCGGGAAGGCGTTCAGAGCGAGTTTTTCGCCGCAGCAGAACATGGCA TCGTTCGAGGGAACAGGCCTGTGGTCGGTGGACGCAGACCGGGCGTTAGG CCGTCTCAAACGCACGAGCAAGAGAAAGGAACGACCAAACGACCGCGAGC CCCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig148459:618..1322+

>mRNA_H-elongata_contig148459.3260.1 ID=mRNA_H-elongata_contig148459.3260.1|Name=mRNA_H-elongata_contig148459.3260.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig148459:618..1322+ (Himanthalia elongata Himel1 dioecious)
ACAGGAAGCACCACACAGGGCACGAAGCCGCTGAGGGCGGTTGCAAAAAT
AGGGCAAAATGTCACAGGACAGATGCGCTCCGACTCGCGGGAGAACGTCA
CACTGGTGGCCACCATAAGCGCTGATGGCCGCGTGTTTGACCCGCTGGTG
GTATTCAAAGGGCGGCGGGTGCAGCCGGATTGGGTGGCTCAGGAAAGCGG
CCCCCCGAACGCGACATACGTCGCCACAGAGTCCTTGTTCATAGAGGGTA
CAGTGTTCCTCGACTACCTCAAAGACTTCCACAAGCAGCTTGGCAAGCTC
AAGTTGCTCGATGGCAAACCGCATGCGCTCCTGCTCAATGACCACGCCGC
GCACATGACGCTCGAAGCCATCAAGTTGGCCAGAAAACTCGGTATCGTCC
TCTTTCAGCTGCCGTCCCACACTCCCCACATCACCCAGTCGTTGGATGTG
ACTGCGTTCGGATCGTACAAGTCGAGGGTCACGAAAGCGCTCACGGCCTT
TCCGGGCAACCACGGAGGCAGATTGCCCTTGAAGCGCGACATAGTGATCG
TGATCGGGAAGGCGTTCAGAGCGAGTTTTTCGCCGCAGCAGAACATGGCA
TCGTTCGAGGGAACAGGCCTGTGGTCGGTGGACGCAGACCGGGCGTTAGG
CCGTCTCAAACGCACGAGCAAGAGAAAGGAACGACCAAACGACCGCGAGC
CCCTGACAGGAAGCACCACACAGGGCACGAAGCCGCTGAGGGCGGTTGCA
AAAATAGGGCAAAATGTCACAGGACAGATGCGCTCCGACTCGCGGGAGAA
CGTCACACTGGTGGCCACCATAAGCGCTGATGGCCGCGTGTTTGACCCGC
TGGTGGTATTCAAAGGGCGGCGGGTGCAGCCGGATTGGGTGGCTCAGGAA
AGCGGCCCCCCGAACGCGACATACGTCGCCACAGAGTCCTTGTTCATAGA
GGGTACAGTGTTCCTCGACTACCTCAAAGACTTCCACAAGCAGCTTGGCA
AGCTCAAGTTGCTCGATGGCAAACCGCATGCGCTCCTGCTCAATGACCAC
GCCGCGCACATGACGCTCGAAGCCATCAAGTTGGCCAGAAAACTCGGTAT
CGTCCTCTTTCAGCTGCCGTCCCACACTCCCCACATCACCCAGTCGTTGG
ATGTGACTGCGTTCGGATCGTACAAGTCGAGGGTCACGAAAGCGCTCACG
GCCTTTCCGGGCAACCACGGAGGCAGATTGCCCTTGAAGCGCGACATAGT
GATCGTGATCGGGAAGGCGTTCAGAGCGAGTTTTTCGCCGCAGCAGAACA
TGGCATCGTTCGAGGGAACAGGCCTGTGGTCGGTGGACGCAGACCGGGCG
TTAGGCCGTCTCAAACGCACGAGCAAGAGAAAGGAACGACCAAACGACCG
CGAGCCCCTG
back to top