mRNA_H-elongata_contig14821.3248.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14821.3248.1
Unique NamemRNA_H-elongata_contig14821.3248.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: D8LDT3_ECTSI (ATP-binding cassette transporter, subfamily B, member 4, group TAP protein PpABCB4 MET type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDT3_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.840e-37
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
            EM KY+ AT VALDKG+KDS GSAGTN  SSYLDLGAGALILWYGG+LAM+ + RM+AGRLITYQLYWNMINNSWQ LLGV+S
Sbjct:  628 EMAKYDTATQVALDKGVKDSFGSAGTNAMSSYLDLGAGALILWYGGSLAMEDDRRMTAGRLITYQLYWNMINNSWQALLGVIS 710          
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S1DV78_HEMAN (Hypothetical protein (Fragment) n=5 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DV78_HEMAN)

HSP 1 Score: 99.8 bits (247), Expect = 1.460e-22
Identity = 43/83 (51.81%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
            E+G Y  +T VAL  G++D+ G+AG N  +SY+DL A  L+LWYGG LA+  + RM+AG+LITYQLYWNM+++S+++L+ +V+
Sbjct:  490 EVGNYRDSTRVALSTGVRDAWGTAGMNTINSYMDLAANVLVLWYGGWLAIQHDGRMTAGKLITYQLYWNMMDSSYKSLIDMVT 572          
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A812WDC2_SYMMI (AbcB1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WDC2_SYMMI)

HSP 1 Score: 98.6 bits (244), Expect = 2.290e-22
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
            E+ KY++   +AL KGI D+LG AG    +SYLDLGAG LILWYGG LAM  +  +S G+LIT+QLYWNMIN +++ L+ +++
Sbjct:   58 EIEKYSSGILIALQKGIYDALGGAGMYTINSYLDLGAGVLILWYGGRLAMQEDSTLSPGKLITFQLYWNMINGAYKGLVDILT 140          
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A0M0JFP4_9EUKA (Lipid a export ATP-binding permease protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFP4_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 9.420e-22
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
            E+ ++     +AL KG+KD++  A +N F++YLDLGAG LILWYGG++AM+ E  ++ G LITYQLYWNM+NNS Q L  V++
Sbjct:  581 EIERFEVTLRLALSKGVKDAIFGAFSNAFNNYLDLGAGVLILWYGGSIAMEPEGSITVGNLITYQLYWNMLNNSLQALNNVLN 663          
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7R9TGT2_9VIRI (Hypothetical protein (Fragment) n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TGT2_9VIRI)

HSP 1 Score: 93.6 bits (231), Expect = 1.990e-20
Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
            E+ KY   T  A+ KG++D++G AG+   ++YLDLGA  L+LWYGG + M G+  ++AG LITYQLYWNM+ +S+++L  V++
Sbjct:  159 EIHKYTTKTREAMQKGVRDAVGGAGSYALNNYLDLGAMVLMLWYGGVIVMSGDGSLTAGGLITYQLYWNMLQSSFKSLQNVIT 241          
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S0EEJ0_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EEJ0_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 3.250e-20
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAM--DGEDRMSAGRLITYQLYWNMINNSWQNLLGVVSR 252
            E+ KY+     AL KG++D++  A T  F++YLDLGAG LILWYGG++AM  +G   ++ G LI YQLYWNMIN ++Q+L  V+++
Sbjct:  157 EIDKYDETMTKALRKGVRDAIVGAATVSFNNYLDLGAGVLILWYGGSIAMSPEGASVLTVGSLIKYQLYWNMINGAYQSLNNVLNQ 242          
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S2EUW4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EUW4_TRICV)

HSP 1 Score: 92.8 bits (229), Expect = 3.970e-20
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    4 MGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
            + KY      ALD G+KD+ G+  T+  + YLDLGAG LILW+GG L  DGE  +S G L+T+QL+WNM+NN++QNL G+++
Sbjct:  387 IAKYTETNKQALDCGVKDAWGNGLTSALTGYLDLGAGVLILWFGGLLVYDGE--LSVGELVTFQLFWNMMNNAYQNLQGLIT 466          
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S3FCF0_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FCF0_9VIRI)

HSP 1 Score: 91.7 bits (226), Expect = 1.000e-19
Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
            E+GKY   T  A+ KG++D++G A +   +SYLDLGA  L+LWYGG + + G+  ++AG LITYQLYWNM+ +S+++L  V++
Sbjct:  304 ELGKYTTKTLEAMQKGVRDAVGGASSFALNSYLDLGAMVLMLWYGGHIVLSGDGTLTAGGLITYQLYWNMLQSSFKSLQNVMT 386          
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S0L5H2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5H2_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 1.330e-19
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQ---NLLGVVSR 252
            E  K     + AL KGI+D+   A +  F++YLDLGAG LILWYGG +AM G+  ++ G LI YQLYWNMINNSWQ   NLL   +R
Sbjct:  422 EQDKVGDFLSKALRKGIQDAFLGAFSAAFNNYLDLGAGVLILWYGGAIAMKGDGSITVGSLIRYQLYWNMINNSWQALNNLLNSFTR 508          
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S0U4T8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U4T8_HEMAN)

HSP 1 Score: 91.3 bits (225), Expect = 1.370e-19
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVSR 252
            E+  +  A   AL  G++D+ G AG N  +SY+DL A  L+LWYGG LA+  + RM+AG+LITYQLYW M+++S++ L+ ++S+
Sbjct:  359 EVASFEKAARAALTVGVRDAWGGAGMNTINSYMDLAANVLVLWYGGWLAIQHDGRMTAGKLITYQLYWTMMDSSYKQLIDILSQ 442          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDT3_ECTSI2.840e-3780.72ATP-binding cassette transporter, subfamily B, mem... [more]
A0A7S1DV78_HEMAN1.460e-2251.81Hypothetical protein (Fragment) n=5 Tax=Hemiselmis... [more]
A0A812WDC2_SYMMI2.290e-2254.22AbcB1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A0M0JFP4_9EUKA9.420e-2253.01Lipid a export ATP-binding permease protein n=1 Ta... [more]
A0A7R9TGT2_9VIRI1.990e-2048.19Hypothetical protein (Fragment) n=2 Tax=Prasinoder... [more]
A0A7S0EEJ0_9EUKA3.250e-2050.00Hypothetical protein (Fragment) n=2 Tax=Phaeocysti... [more]
A0A7S2EUW4_TRICV3.970e-2051.22Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3FCF0_9VIRI1.000e-1948.19Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S0L5H2_9EUKA1.330e-1954.02Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0U4T8_HEMAN1.370e-1946.43Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14821contigH-elongata_contig14821:460..1089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue7.5e-31
Seed eggNOG ortholog2880.D8LDT3
KEGG koko:K05657
KEGG TC3.A.1.201
KEGG Pathwayko02010,map02010
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14821.3248.1prot_H-elongata_contig14821.3248.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14821 463..1089 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.1345787-UTR-H-elongata_contig14821:459..4621622929878.1345787-UTR-H-elongata_contig14821:459..462Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14821 460..462 +
1691679192.4840822-UTR-H-elongata_contig14821:459..4621691679192.4840822-UTR-H-elongata_contig14821:459..462Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14821 460..462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.1459346-CDS-H-elongata_contig14821:462..6561622929878.1459346-CDS-H-elongata_contig14821:462..656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14821 463..656 +
1691679192.4966826-CDS-H-elongata_contig14821:462..6561691679192.4966826-CDS-H-elongata_contig14821:462..656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14821 463..656 +
1622929878.1563072-CDS-H-elongata_contig14821:1031..10891622929878.1563072-CDS-H-elongata_contig14821:1031..1089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14821 1032..1089 +
1691679192.5051138-CDS-H-elongata_contig14821:1031..10891691679192.5051138-CDS-H-elongata_contig14821:1031..1089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14821 1032..1089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14821.3248.1

>prot_H-elongata_contig14821.3248.1 ID=prot_H-elongata_contig14821.3248.1|Name=mRNA_H-elongata_contig14821.3248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMD
GEDRMSAGRLITYQLYWNMINNSWQNLLGVVSR*
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mRNA from alignment at H-elongata_contig14821:460..1089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14821.3248.1 ID=mRNA_H-elongata_contig14821.3248.1|Name=mRNA_H-elongata_contig14821.3248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=630bp|location=Sequence derived from alignment at H-elongata_contig14821:460..1089+ (Himanthalia elongata Himel1 dioecious)
GAAATGGGGAAGTACAATGCGGCGACCAATGTGGCTCTCGACAAGGGAAT CAAAGACTCGCTCGGCTCCGCGGGCACGAACTTTTTCAGTAGCTACCTTG ATCTCGGCGCGGGCGCGCTGATCCTGTGGTACGGAGGCACCCTAGCCATG GACGGCGAGGACAGGATGTCCGCCGGTAGGCTCATCACCTACCAGCTGTG AGTTATAGCTACCCGGGGGAAAGGTGGGGGGAAGAAGAGAGAGATTCGAC GAATCTATTCCCGAGTTTAGATAGAGCTACCATCCCGTTGACTGAACAAA CATAAATAATCCCACCCGGATATAGTGTTTTGATACCCACCCCCCAGCCA CCCTAAAATCGATGGTATTCGTCTAATCCCTCCTCAGCTACTCAGTAAAT CGCTATGATTCGTGCGACCAACTCGGCTGGGCTTCACCTGCTGTCGCGCT TTCAAGGAGTTCTGCCTCAAGCCCCCCTTTTTTCTATCTTCGTACCTCAA ATATCTCCCCAACCACAACTCCCTCTCTTAACCCATACCTTCTTTCCACC TTGTTCTGCGACACACGCGTAGGTACTGGAACATGATCAATAACTCCTGG CAGAACCTTCTCGGCGTCGTGAGCAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig14821:460..1089+

>mRNA_H-elongata_contig14821.3248.1 ID=mRNA_H-elongata_contig14821.3248.1|Name=mRNA_H-elongata_contig14821.3248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig14821:460..1089+ (Himanthalia elongata Himel1 dioecious)
ATGGGGAAGTACAATGCGGCGACCAATGTGGCTCTCGACAAGGGAATCAA
AGACTCGCTCGGCTCCGCGGGCACGAACTTTTTCAGTAGCTACCTTGATC
TCGGCGCGGGCGCGCTGATCCTGTGGTACGGAGGCACCCTAGCCATGGAC
GGCGAGGACAGGATGTCCGCCGGTAGGCTCATCACCTACCAGCTATGGGG
AAGTACAATGCGGCGACCAATGTGGCTCTCGACAAGGGAATCAAAGACTC
GCTCGGCTCCGCGGGCACGAACTTTTTCAGTAGCTACCTTGATCTCGGCG
CGGGCGCGCTGATCCTGTGGTACGGAGGCACCCTAGCCATGGACGGCGAG
GACAGGATGTCCGCCGGTAGGCTCATCACCTACCAGCTGTACTGGAACAT
GATCAATAACTCCTGGCAGAACCTTCTCGGCGTCGTGAGCAGGTAGGTAC
TGGAACATGATCAATAACTCCTGGCAGAACCTTCTCGGCGTCGTGAGCAG
GTAG
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