mRNA_H-elongata_contig14821.3248.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: D8LDT3_ECTSI (ATP-binding cassette transporter, subfamily B, member 4, group TAP protein PpABCB4 MET type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDT3_ECTSI) HSP 1 Score: 141 bits (356), Expect = 2.840e-37 Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 1
Query: 1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
EM KY+ AT VALDKG+KDS GSAGTN SSYLDLGAGALILWYGG+LAM+ + RM+AGRLITYQLYWNMINNSWQ LLGV+S
Sbjct: 628 EMAKYDTATQVALDKGVKDSFGSAGTNAMSSYLDLGAGALILWYGGSLAMEDDRRMTAGRLITYQLYWNMINNSWQALLGVIS 710
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S1DV78_HEMAN (Hypothetical protein (Fragment) n=5 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DV78_HEMAN) HSP 1 Score: 99.8 bits (247), Expect = 1.460e-22 Identity = 43/83 (51.81%), Postives = 65/83 (78.31%), Query Frame = 1
Query: 1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
E+G Y +T VAL G++D+ G+AG N +SY+DL A L+LWYGG LA+ + RM+AG+LITYQLYWNM+++S+++L+ +V+
Sbjct: 490 EVGNYRDSTRVALSTGVRDAWGTAGMNTINSYMDLAANVLVLWYGGWLAIQHDGRMTAGKLITYQLYWNMMDSSYKSLIDMVT 572
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A812WDC2_SYMMI (AbcB1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WDC2_SYMMI) HSP 1 Score: 98.6 bits (244), Expect = 2.290e-22 Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 1
Query: 1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
E+ KY++ +AL KGI D+LG AG +SYLDLGAG LILWYGG LAM + +S G+LIT+QLYWNMIN +++ L+ +++
Sbjct: 58 EIEKYSSGILIALQKGIYDALGGAGMYTINSYLDLGAGVLILWYGGRLAMQEDSTLSPGKLITFQLYWNMINGAYKGLVDILT 140
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A0M0JFP4_9EUKA (Lipid a export ATP-binding permease protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFP4_9EUKA) HSP 1 Score: 97.4 bits (241), Expect = 9.420e-22 Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1
Query: 1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
E+ ++ +AL KG+KD++ A +N F++YLDLGAG LILWYGG++AM+ E ++ G LITYQLYWNM+NNS Q L V++
Sbjct: 581 EIERFEVTLRLALSKGVKDAIFGAFSNAFNNYLDLGAGVLILWYGGSIAMEPEGSITVGNLITYQLYWNMLNNSLQALNNVLN 663
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7R9TGT2_9VIRI (Hypothetical protein (Fragment) n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TGT2_9VIRI) HSP 1 Score: 93.6 bits (231), Expect = 1.990e-20 Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
E+ KY T A+ KG++D++G AG+ ++YLDLGA L+LWYGG + M G+ ++AG LITYQLYWNM+ +S+++L V++
Sbjct: 159 EIHKYTTKTREAMQKGVRDAVGGAGSYALNNYLDLGAMVLMLWYGGVIVMSGDGSLTAGGLITYQLYWNMLQSSFKSLQNVIT 241
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S0EEJ0_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EEJ0_9EUKA) HSP 1 Score: 90.1 bits (222), Expect = 3.250e-20 Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAM--DGEDRMSAGRLITYQLYWNMINNSWQNLLGVVSR 252
E+ KY+ AL KG++D++ A T F++YLDLGAG LILWYGG++AM +G ++ G LI YQLYWNMIN ++Q+L V+++
Sbjct: 157 EIDKYDETMTKALRKGVRDAIVGAATVSFNNYLDLGAGVLILWYGGSIAMSPEGASVLTVGSLIKYQLYWNMINGAYQSLNNVLNQ 242
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S2EUW4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EUW4_TRICV) HSP 1 Score: 92.8 bits (229), Expect = 3.970e-20 Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 4 MGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
+ KY ALD G+KD+ G+ T+ + YLDLGAG LILW+GG L DGE +S G L+T+QL+WNM+NN++QNL G+++
Sbjct: 387 IAKYTETNKQALDCGVKDAWGNGLTSALTGYLDLGAGVLILWFGGLLVYDGE--LSVGELVTFQLFWNMMNNAYQNLQGLIT 466
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S3FCF0_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FCF0_9VIRI) HSP 1 Score: 91.7 bits (226), Expect = 1.000e-19 Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVS 249
E+GKY T A+ KG++D++G A + +SYLDLGA L+LWYGG + + G+ ++AG LITYQLYWNM+ +S+++L V++
Sbjct: 304 ELGKYTTKTLEAMQKGVRDAVGGASSFALNSYLDLGAMVLMLWYGGHIVLSGDGTLTAGGLITYQLYWNMLQSSFKSLQNVMT 386
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S0L5H2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5H2_9EUKA) HSP 1 Score: 91.3 bits (225), Expect = 1.330e-19 Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQ---NLLGVVSR 252
E K + AL KGI+D+ A + F++YLDLGAG LILWYGG +AM G+ ++ G LI YQLYWNMINNSWQ NLL +R
Sbjct: 422 EQDKVGDFLSKALRKGIQDAFLGAFSAAFNNYLDLGAGVLILWYGGAIAMKGDGSITVGSLIRYQLYWNMINNSWQALNNLLNSFTR 508
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Match: A0A7S0U4T8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U4T8_HEMAN) HSP 1 Score: 91.3 bits (225), Expect = 1.370e-19 Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 1
Query: 1 EMGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDGEDRMSAGRLITYQLYWNMINNSWQNLLGVVSR 252
E+ + A AL G++D+ G AG N +SY+DL A L+LWYGG LA+ + RM+AG+LITYQLYW M+++S++ L+ ++S+
Sbjct: 359 EVASFEKAARAALTVGVRDAWGGAGMNTINSYMDLAANVLVLWYGGWLAIQHDGRMTAGKLITYQLYWTMMDSSYKQLIDILSQ 442 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14821.3248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14821.3248.1 >prot_H-elongata_contig14821.3248.1 ID=prot_H-elongata_contig14821.3248.1|Name=mRNA_H-elongata_contig14821.3248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp MGKYNAATNVALDKGIKDSLGSAGTNFFSSYLDLGAGALILWYGGTLAMDback to top mRNA from alignment at H-elongata_contig14821:460..1089+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14821.3248.1 ID=mRNA_H-elongata_contig14821.3248.1|Name=mRNA_H-elongata_contig14821.3248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=630bp|location=Sequence derived from alignment at H-elongata_contig14821:460..1089+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14821:460..1089+ >mRNA_H-elongata_contig14821.3248.1 ID=mRNA_H-elongata_contig14821.3248.1|Name=mRNA_H-elongata_contig14821.3248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig14821:460..1089+ (Himanthalia elongata Himel1 dioecious)back to top |