mRNA_H-elongata_contig14814.3245.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14814.3245.1
Unique NamemRNA_H-elongata_contig14814.3245.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Match: A0A6S7JBU2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBU2_PARCT)

HSP 1 Score: 77.8 bits (190), Expect = 2.720e-16
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   10 CGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIMLVYRLKVGAER 183
            C RCK DKKS K FSA N+MDPG VP QL+GLTQ EE+LI++ CPIM VYR K G +R
Sbjct:   37 CYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYR-KHGGQR 93
[Close]
BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT)

HSP 1 Score: 78.2 bits (191), Expect = 1.150e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   10 CGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIMLVYRLKVGAER 183
            C RCK DKKS K FSA N+MDPG VP QL+GLTQ EE+LI++ CPIM VYR K G +R
Sbjct:  163 CYRCKRDKKSPKKFSAENDMDPGTVPEQLRGLTQVEEMLISRVCPIMRVYR-KHGGQR 219
[Close]
BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Match: UPI00106CBCF8 (uncharacterized protein LOC114518711 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CBCF8)

HSP 1 Score: 78.6 bits (192), Expect = 2.000e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   10 CGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIMLVYRLKVGAER 183
            C RCK DKKS K FSA N+MDPG VP QL+GLTQ EE+LI++ CPIM VYR K G +R
Sbjct:  322 CYRCKRDKKSPKNFSAGNDMDPGIVPEQLRGLTQVEEMLISRVCPIMQVYR-KHGGQR 378
[Close]
BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Match: A0A7D9ETB4_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ETB4_PARCT)

HSP 1 Score: 77.4 bits (189), Expect = 2.060e-15
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   10 CGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIMLVYRLKVGAER 183
            C RCK DKKS K FSA N+MDPG VP QL GLTQ EE+LI++ CPIM VYR K G +R
Sbjct:  113 CYRCKKDKKSPKKFSAENDMDPGIVPEQLSGLTQVEEMLISRVCPIMRVYR-KHGGQR 169
[Close]
BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.760e-15
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 IGTCGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIMLVYRLKVG 174
            + +C RCK DKKS K FSA N MDPG+VP +LQGLTQ EE+LIA+ CPIM V  LK G
Sbjct:  130 VYSCPRCKKDKKSPKLFSADNTMDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGG 187
[Close]
BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT)

HSP 1 Score: 77.8 bits (190), Expect = 3.110e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   10 CGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIMLVYRLKVGAER 183
            C RCK DKKS K FSA N+MDPG VP QL+GLTQ EE+LI++ CPIM VYR K G +R
Sbjct:  148 CYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYR-KHGGQR 204
[Close]
BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT)

HSP 1 Score: 77.8 bits (190), Expect = 3.160e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   10 CGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIMLVYRLKVGAER 183
            C RCK DKKS K FSA N+MDPG VP QL+GLTQ EE+LI++ CPIM VYR K G +R
Sbjct:  137 CYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYR-KHGGQR 193
[Close]
BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.700e-15
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    7 TCGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIMLVYRLKVG 174
            +C RCK DKKS K FSA N MDPG+VP +LQGLTQ EE+LIA+ CPIM V  LK G
Sbjct:   25 SCPRCKKDKKSPKLFSADNTMDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGG 80
[Close]
BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Match: A0A7D9LNP2_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LNP2_PARCT)

HSP 1 Score: 77.8 bits (190), Expect = 3.710e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   10 CGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIMLVYRLKVGAER 183
            C RCK DKKS K FSA N+MDPG VP QL+GLTQ EE+LI++ CPIM VYR K G +R
Sbjct:  305 CYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYR-KHGGQR 361
[Close]
BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Match: A0A6S7GE38_PARCT (Helitron_like_N domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GE38_PARCT)

HSP 1 Score: 77.8 bits (190), Expect = 3.710e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   10 CGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIMLVYRLKVGAER 183
            C RCK DKKS K FSA N+MDPG VP QL+GLTQ EE+LI++ CPIM VYR K G +R
Sbjct:  148 CYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYR-KHGGQR 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14814.3245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7JBU2_PARCT2.720e-1667.24Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7G3B5_PARCT1.150e-1567.24Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
UPI00106CBCF82.000e-1567.24uncharacterized protein LOC114518711 n=1 Tax=Dendr... [more]
A0A7D9ETB4_PARCT2.060e-1567.24Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6H5L976_9PHAE2.760e-1565.52ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6S7JXT5_PARCT3.110e-1567.24Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A7D9LMQ1_PARCT3.160e-1567.24Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A6H5J8Y8_9PHAE3.700e-1567.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7D9LNP2_PARCT3.710e-1567.24Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A6S7GE38_PARCT3.710e-1567.24Helitron_like_N domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14814contigH-elongata_contig14814:5417..5620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.0
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog400682.PAC_15700047
EggNOG OGs2CC8B@1,2S3BW@2759,3A3QP@33154,3C1YH@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929877.709786-CDS-H-elongata_contig14814:5416..56201622929877.709786-CDS-H-elongata_contig14814:5416..5620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14814 5417..5620 +
1691679192.3108332-CDS-H-elongata_contig14814:5416..56201691679192.3108332-CDS-H-elongata_contig14814:5416..5620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14814 5417..5620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14814.3245.1prot_H-elongata_contig14814.3245.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14814 5417..5620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14814.3245.1

>prot_H-elongata_contig14814.3245.1 ID=prot_H-elongata_contig14814.3245.1|Name=mRNA_H-elongata_contig14814.3245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
IGTCGRCKCDKKSVKTFSAANNMDPGAVPPQLQGLTQAEEILIAKDCPIM
LVYRLKVGAERIRWARG*
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mRNA from alignment at H-elongata_contig14814:5417..5620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14814.3245.1 ID=mRNA_H-elongata_contig14814.3245.1|Name=mRNA_H-elongata_contig14814.3245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig14814:5417..5620+ (Himanthalia elongata Himel1 dioecious)
ATAGGCACGTGCGGCCGGTGCAAGTGTGATAAGAAGTCTGTTAAGACCTT
CTCAGCTGCGAACAACATGGACCCTGGTGCGGTGCCCCCACAGCTCCAGG
GCCTCACTCAGGCGGAGGAGATACTGATTGCCAAAGACTGCCCTATCATG
CTTGTGTATCGCCTGAAGGTGGGGGCAGAAAGAATACGGTGGGCACGTGG
TTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14814:5417..5620+

>mRNA_H-elongata_contig14814.3245.1 ID=mRNA_H-elongata_contig14814.3245.1|Name=mRNA_H-elongata_contig14814.3245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig14814:5417..5620+ (Himanthalia elongata Himel1 dioecious)
ATAGGCACGTGCGGCCGGTGCAAGTGTGATAAGAAGTCTGTTAAGACCTT
CTCAGCTGCGAACAACATGGACCCTGGTGCGGTGCCCCCACAGCTCCAGG
GCCTCACTCAGGCGGAGGAGATACTGATTGCCAAAGACTGCCCTATCATG
CTTGTGTATCGCCTGAAGGTGGGGGCAGAAAGAATACGGTGGGCACGTGG
TTGAATAGGCACGTGCGGCCGGTGCAAGTGTGATAAGAAGTCTGTTAAGA
CCTTCTCAGCTGCGAACAACATGGACCCTGGTGCGGTGCCCCCACAGCTC
CAGGGCCTCACTCAGGCGGAGGAGATACTGATTGCCAAAGACTGCCCTAT
CATGCTTGTGTATCGCCTGAAGGTGGGGGCAGAAAGAATACGGTGGGCAC
GTGGTTGA
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